CX043282

Overview
NameCX043282
Unique NameCX043282
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length854
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9984 contig Csv1_Contig9984:81..923. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043282 vs. ExPASy Swiss-Prot
Match: IDHC_HUMAN (Isocitrate dehydrogenase [NADP] cytoplasmic OS=Homo sapiens GN=IDH1 PE=1 SV=2)

HSP 1 Score: 311.227 bits (796), Expect = 4.643e-84
Identity = 150/208 (72.12%), Postives = 174/208 (83.65%), Query Frame = -2
Query:  230 KKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHG-SKMTREHYLNTEEFIDAVADDLRARLS 850
            K WPLYLSTKNTILKKYDGRFKDIFQE+Y+  +KS+FEA  IWYEHRLIDDMVA A+KSEGG++WACKNYDGDVQSD +AQG+GSLG+MTSVLVCPDGKT+EAEAAHGTVTRHYR++QKG ETSTN IASIFAW+RGLAHRAKLDNN  L  F   LE   I T+E+G MTKDLA  I G   + R  YLNT EF+D + ++L+ +L+
Sbjct:  203 KGWPLYLSTKNTILKKYDGRFKDIFQEIYDKQYKSQFEAQKIWYEHRLIDDMVAQAMKSEGGFIWACKNYDGDVQSDSVAQGYGSLGMMTSVLVCPDGKTVEAEAAHGTVTRHYRMYQKGQETSTNPIASIFAWTRGLAHRAKLDNNKELAFFANALEEVSIETIEAGFMTKDLAACIKGLPNVQRSDYLNTFEFMDKLGENLKIKLA 410          
BLAST of CX043282 vs. ExPASy Swiss-Prot
Match: IDHC_PONAB (Isocitrate dehydrogenase [NADP] cytoplasmic OS=Pongo abelii GN=IDH1 PE=2 SV=2)

HSP 1 Score: 310.842 bits (795), Expect = 6.063e-84
Identity = 149/208 (71.63%), Postives = 174/208 (83.65%), Query Frame = -2
Query:  230 KKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHG-SKMTREHYLNTEEFIDAVADDLRARLS 850
            K WPLYLSTKNTILKKYDGRFKDIFQE+Y+  +KS+FEA  IWYEHRLIDDMVA A+KSEGG++WACKNYDGDVQSD +AQG+GSLG+MTSVLVCPDGKT+EAEAAHGTVTRHYR++QKG ETSTN IASIFAW+RGLAHRAKLDNN  L  F   LE   + T+E+G MTKDLA  I G   + R  YLNT EF+D + ++L+ +L+
Sbjct:  203 KGWPLYLSTKNTILKKYDGRFKDIFQEIYDKQYKSQFEARKIWYEHRLIDDMVAQAMKSEGGFIWACKNYDGDVQSDSVAQGYGSLGMMTSVLVCPDGKTVEAEAAHGTVTRHYRMYQKGQETSTNPIASIFAWTRGLAHRAKLDNNKELAFFANALEEVSVETIEAGFMTKDLAACIKGLPNVQRSDYLNTFEFMDKLGENLKIKLA 410          
BLAST of CX043282 vs. ExPASy Swiss-Prot
Match: IDHP_PIG (Isocitrate dehydrogenase [NADP], mitochondrial (Fragment) OS=Sus scrofa GN=IDH2 PE=1 SV=1)

HSP 1 Score: 310.457 bits (794), Expect = 7.919e-84
Identity = 149/205 (72.68%), Postives = 167/205 (81.46%), Query Frame = -2
Query:  245 QKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTR--EHYLNTEEFIDAVADDL 853
            QKKWPLY+STKNTILK YDGRFKDIFQE++E ++K+ F+   IWYEHRLIDDMVA  LKS GG+VWACKNYDGDVQSD LAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYR HQKG  TSTN IASIFAW+RGL HR KLD N  L+ F + LE  C+ TVESG MTKDLA  IHG    +  EH+LNT +F+D +  +L
Sbjct:  210 QKKWPLYMSTKNTILKAYDGRFKDIFQEIFEKHYKTDFDKYKIWYEHRLIDDMVAQVLKSSGGFVWACKNYDGDVQSDILAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYREHQKGRPTSTNPIASIFAWTRGLEHRGKLDGNQDLIRFAQTLEKVCVETVESGAMTKDLAGCIHGLSNVKLNEHFLNTSDFLDTIKSNL 414          
BLAST of CX043282 vs. ExPASy Swiss-Prot
Match: IDHP_MOUSE (Isocitrate dehydrogenase [NADP], mitochondrial OS=Mus musculus GN=Idh2 PE=1 SV=3)

HSP 1 Score: 309.686 bits (792), Expect = 1.351e-83
Identity = 149/205 (72.68%), Postives = 167/205 (81.46%), Query Frame = -2
Query:  245 QKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTR--EHYLNTEEFIDAVADDL 853
            QKKWPLYLSTKNTILK YDGRFKDIFQE+++ ++K+ F+   IWYEHRLIDDMVA  LKS GG+VWACKNYDGDVQSD LAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYR HQKG  TSTN IASIFAW+RGL HR KLD N  L+ F + LE  C+ TVESG MTKDLA  IHG    +  EH+LNT +F+D +  +L
Sbjct:  241 QKKWPLYLSTKNTILKAYDGRFKDIFQEIFDKHYKTDFDKNKIWYEHRLIDDMVAQVLKSSGGFVWACKNYDGDVQSDILAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYREHQKGRPTSTNPIASIFAWTRGLEHRGKLDGNQDLIRFAQTLEKVCVQTVESGAMTKDLAGCIHGLSNVKLNEHFLNTTDFLDTIKSNL 445          
BLAST of CX043282 vs. ExPASy Swiss-Prot
Match: IDHP_RAT (Isocitrate dehydrogenase [NADP], mitochondrial OS=Rattus norvegicus GN=Idh2 PE=1 SV=2)

HSP 1 Score: 308.916 bits (790), Expect = 2.304e-83
Identity = 148/205 (72.20%), Postives = 167/205 (81.46%), Query Frame = -2
Query:  245 QKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTR--EHYLNTEEFIDAVADDL 853
            QKKWPLYLSTKNTI+K YDGRFKDIFQE+++ ++K+ F+   IWYEHRLIDDMVA  LKS GG+VWACKNYDGDVQSD LAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYR HQKG  TSTN IASIFAW+RGL HR KLD N  L+ F + LE  C+ TVESG MTKDLA  IHG    +  EH+LNT +F+D +  +L
Sbjct:  241 QKKWPLYLSTKNTIMKAYDGRFKDIFQEIFDKHYKTDFDKNKIWYEHRLIDDMVAQVLKSSGGFVWACKNYDGDVQSDILAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYREHQKGRPTSTNPIASIFAWTRGLEHRGKLDGNQDLIRFAQTLEKVCVQTVESGAMTKDLAGCIHGLSNVKLNEHFLNTTDFLDTIKSNL 445          
BLAST of CX043282 vs. ExPASy Swiss-Prot
Match: IDHP_MACFA (Isocitrate dehydrogenase [NADP], mitochondrial OS=Macaca fascicularis GN=IDH2 PE=2 SV=1)

HSP 1 Score: 308.916 bits (790), Expect = 2.304e-83
Identity = 148/205 (72.20%), Postives = 167/205 (81.46%), Query Frame = -2
Query:  245 QKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTR--EHYLNTEEFIDAVADDL 853
            QKKWPLY+STKNTILK YDGRFKDIFQE+++ ++K+ F+   IWYEHRLIDDMVA  LKS GG+VWACKNYDGDVQSD LAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYR HQKG  TSTN IASIFAW+RGL HR KLD N  L+ F + LE  C+ TVESG MTKDLA  IHG    +  EH+LNT +F+D +  +L
Sbjct:  241 QKKWPLYMSTKNTILKAYDGRFKDIFQEIFDKHYKTDFDKNKIWYEHRLIDDMVAQVLKSSGGFVWACKNYDGDVQSDILAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYREHQKGRPTSTNPIASIFAWTRGLEHRGKLDGNQDLIRFAQTLEKVCVETVESGAMTKDLAGCIHGLSNVKLNEHFLNTTDFLDTIKSNL 445          
BLAST of CX043282 vs. ExPASy Swiss-Prot
Match: IDHP_HUMAN (Isocitrate dehydrogenase [NADP], mitochondrial OS=Homo sapiens GN=IDH2 PE=1 SV=2)

HSP 1 Score: 308.916 bits (790), Expect = 2.304e-83
Identity = 148/205 (72.20%), Postives = 167/205 (81.46%), Query Frame = -2
Query:  245 QKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTR--EHYLNTEEFIDAVADDL 853
            QKKWPLY+STKNTILK YDGRFKDIFQE+++ ++K+ F+   IWYEHRLIDDMVA  LKS GG+VWACKNYDGDVQSD LAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYR HQKG  TSTN IASIFAW+RGL HR KLD N  L+ F + LE  C+ TVESG MTKDLA  IHG    +  EH+LNT +F+D +  +L
Sbjct:  241 QKKWPLYMSTKNTILKAYDGRFKDIFQEIFDKHYKTDFDKNKIWYEHRLIDDMVAQVLKSSGGFVWACKNYDGDVQSDILAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYREHQKGRPTSTNPIASIFAWTRGLEHRGKLDGNQDLIRFAQMLEKVCVETVESGAMTKDLAGCIHGLSNVKLNEHFLNTTDFLDTIKSNL 445          
BLAST of CX043282 vs. ExPASy Swiss-Prot
Match: IDHP_BOVIN (Isocitrate dehydrogenase [NADP], mitochondrial OS=Bos taurus GN=IDH2 PE=1 SV=2)

HSP 1 Score: 308.916 bits (790), Expect = 2.304e-83
Identity = 148/205 (72.20%), Postives = 167/205 (81.46%), Query Frame = -2
Query:  245 QKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTR--EHYLNTEEFIDAVADDL 853
            QKKWPLY+STKNTILK YDGRFKDIFQ ++E ++K++F+   IWYEHRLIDDMVA  LKS GG+VWACKNYDGDVQSD LAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYR HQKG  TSTN IASIFAW+RGL HR KLD N  L+ F + LE  C+ TVESG MTKDLA  IHG    +  EH+LNT +F+D +  +L
Sbjct:  241 QKKWPLYMSTKNTILKAYDGRFKDIFQAIFEKHYKTEFDKHKIWYEHRLIDDMVAQVLKSSGGFVWACKNYDGDVQSDILAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYREHQKGRPTSTNPIASIFAWTRGLEHRGKLDGNQDLIRFAQTLEKVCVETVESGAMTKDLAGCIHGLSNVKLNEHFLNTSDFLDTIKSNL 445          
BLAST of CX043282 vs. ExPASy Swiss-Prot
Match: IDHC_DICDI (Isocitrate dehydrogenase [NADP] cytoplasmic OS=Dictyostelium discoideum GN=idhC PE=1 SV=1)

HSP 1 Score: 305.449 bits (781), Expect = 2.548e-82
Identity = 151/209 (72.25%), Postives = 177/209 (84.69%), Query Frame = -2
Query:  230 KKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGS--KMTREHYLNTEEFIDAVADDLRARLS 850
            KKWPLYLSTKNTILK+YDGRFKDIFQE+YE  +K KF+ AGIWYEHRLIDDMVAYA+KSEGG+VWACKNYDGDVQSD +AQG+GSLGLMTSVL+  D  ++ AEA+HGTVTRH+R HQKG ETSTNSIASIFAW+RGL +RAKLDNN +LL F   LEA+CI  VESG MTKDLA+ + GS   + R  YLNTEE+I+ VA+ L ++L+
Sbjct:  204 KKWPLYLSTKNTILKRYDGRFKDIFQEIYEREYKVKFDTAGIWYEHRLIDDMVAYAMKSEGGFVWACKNYDGDVQSDAVAQGYGSLGLMTSVLLSAD--SLVAEASHGTVTRHFREHQKGRETSTNSIASIFAWTRGLEYRAKLDNNDKLLKFCHALEASCIDAVESGFMTKDLAICVKGSVENVKRTDYLNTEEYINKVAELLVSKLT 410          
BLAST of CX043282 vs. ExPASy Swiss-Prot
Match: IDHP_DICDI (Isocitrate dehydrogenase [NADP], mitochondrial OS=Dictyostelium discoideum GN=idhM PE=3 SV=1)

HSP 1 Score: 290.812 bits (743), Expect = 6.493e-78
Identity = 138/200 (69.00%), Postives = 166/200 (83.00%), Query Frame = -2
Query:  251 KKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVAD 850
            KK+PLYLSTKNTILKKYDG+FKDIFQE+YE  + +KF   GIWYEHRLIDDMVA+ALKSEGG+VWACKNYDGDVQSD +AQG+GSLGLMTSVL   DG    +EA+HGTVTRH+R HQKG ETSTNS+ASIFAW+  L  R KLDNN  L+ F + +E AC+ ++ESG MTKDLA+ I G+++ R +YLNTEE+I+ VA+
Sbjct:  224 KKYPLYLSTKNTILKKYDGQFKDIFQEIYEREYSTKFGELGIWYEHRLIDDMVAFALKSEGGFVWACKNYDGDVQSDIVAQGYGSLGLMTSVLTNADG-VFASEASHGTVTRHFREHQKGNETSTNSVASIFAWTSALGQRGKLDNNKDLVKFAQDMEKACVESIESGFMTKDLAICIKGNQVKRSNYLNTEEYINKVAE 422          
The following BLAST results are available for this feature:
BLAST of CX043282 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
IDHC_HUMAN4.643e-8472.12Isocitrate dehydrogenase [NADP] cytoplasmic OS=Hom... [more]
IDHC_PONAB6.063e-8471.63Isocitrate dehydrogenase [NADP] cytoplasmic OS=Pon... [more]
IDHP_PIG7.919e-8472.68Isocitrate dehydrogenase [NADP], mitochondrial (Fr... [more]
IDHP_MOUSE1.351e-8372.68Isocitrate dehydrogenase [NADP], mitochondrial OS=... [more]
IDHP_RAT2.304e-8372.20Isocitrate dehydrogenase [NADP], mitochondrial OS=... [more]
IDHP_MACFA2.304e-8372.20Isocitrate dehydrogenase [NADP], mitochondrial OS=... [more]
IDHP_HUMAN2.304e-8372.20Isocitrate dehydrogenase [NADP], mitochondrial OS=... [more]
IDHP_BOVIN2.304e-8372.20Isocitrate dehydrogenase [NADP], mitochondrial OS=... [more]
IDHC_DICDI2.548e-8272.25Isocitrate dehydrogenase [NADP] cytoplasmic OS=Dic... [more]
IDHP_DICDI6.493e-7869.00Isocitrate dehydrogenase [NADP], mitochondrial OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_10A10_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-10A10-B20-1-7.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043282 ID=CX043282; Name=CX043282; organism=Citrus sinensis; type=EST; length=854bp
TATAACAAGCCATGTTCAAGACATTTGCTTGCATGAAAATGAGAGTTTGT
CGATCAACAGGAAAGCAGTCTATTGTAGCAATTAGAAGAGAACCAAATCC
CAATCCCCAATTTTCCCCTCTTCAATTATTTCTTCTCAGCATAATATGAA
AAAGATAACCAAAGGAAGCTTCCCCAAGTCTTTACCTTTGAATGTGTAGC
ATCTGCAACAAAAAAAATCATGCTTTGCCAGAGAGTCTTGCTCTTAGATC
GTCGGCCACAGCATCAATGAACTCTTCAGTATTCAGATAGTGTTCCCTAG
TCATCTTAGATCCATGGATAATAAGTGCAAGATCCTTGGTCATCTTCCCA
GATTCAACAGTGCCAATACATGCAGCTTCTAGTTTCTCAGTAAAATCCAA
TAGCCTAGCATTGTTGTCCAACTTCGCCCTATGTGCAAGCCCTCGTGACC
AAGCAAAGATGGAGGCTATGCTGTTTGTGCTAGTTTCACCACCTTTCTGA
TGAACTCTGTAGTGTCGGGTAACTGTTCCATGGGCTGCTTCGGCTTCAAT
TGTCTTCCCATCAGGGCATACCAGTACAGATGTCATCAATCCAAGAGATC
CAAACCCTTGAGCTAGGAAATCACTCTGGACATCTCCATCATAATTTTTG
CAAGCCCACACATAACCTCCTTCACTTTTGAGAGCATAAGCTACCATATC
ATCAATGAGACGATGTTCATACCATATGCCAGCAGCTTCAAACTTTGACT
TCCAGTTTGCCTCATAAACCTCTTGAAATATGTCTTTGAATCTTCCATCA
TACTTCTTAAGGATAGTGTTTTTTGTACTAAGATAGAGTGGCCACTTCTT
CTGA
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