EY665535

Overview
NameEY665535
Unique NameEY665535
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length468
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665535 vs. ExPASy Swiss-Prot
Match: RCA_MAIZE (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Zea mays GN=RCA1 PE=2 SV=3)

HSP 1 Score: 70.0922 bits (170), Expect = 5.343e-12
Identity = 32/42 (76.19%), Postives = 40/42 (95.24%), Query Frame = 2
Query:    2 EYGNMIVQEQENVKRVQLADKYLSEAALGEANADAIQSGNFY 127
            EYG+M+V EQENVKRVQLADKYL+EAALGEAN DA+++G+F+
Sbjct:  391 EYGHMLVAEQENVKRVQLADKYLNEAALGEANEDAMKTGSFF 432          
BLAST of EY665535 vs. ExPASy Swiss-Prot
Match: RCA2_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Larrea tridentata GN=RCA2 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 5.343e-12
Identity = 32/41 (78.05%), Postives = 38/41 (92.68%), Query Frame = 2
Query:    2 EYGNMIVQEQENVKRVQLADKYLSEAALGEANADAIQSGNF 124
            +YGNM+V+EQENVKRVQLADKY+SEAALG+AN DAI+ G F
Sbjct:  395 QYGNMLVEEQENVKRVQLADKYMSEAALGDANQDAIKRGTF 435          
BLAST of EY665535 vs. ExPASy Swiss-Prot
Match: RCA_SOLPN (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Solanum pennellii PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.652e-11
Identity = 32/39 (82.05%), Postives = 36/39 (92.31%), Query Frame = 2
Query:    2 EYGNMIVQEQENVKRVQLADKYLSEAALGEANADAIQSG 118
            EYGNM+VQEQENVKRVQLA+ YL EAALG+ANADAI +G
Sbjct:  394 EYGNMLVQEQENVKRVQLAETYLKEAALGDANADAINTG 432          
BLAST of EY665535 vs. ExPASy Swiss-Prot
Match: RCA_PHAVU (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Phaseolus vulgaris GN=RCA1 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.523e-11
Identity = 31/41 (75.61%), Postives = 38/41 (92.68%), Query Frame = 2
Query:    5 YGNMIVQEQENVKRVQLADKYLSEAALGEANADAIQSGNFY 127
            Y +M+VQEQENVKRVQLAD+YL+EAALG AN DAI+SG+F+
Sbjct:  400 YASMLVQEQENVKRVQLADQYLNEAALGNANEDAIKSGSFF 440          
The following BLAST results are available for this feature:
BLAST of EY665535 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
RCA_MAIZE5.343e-1276.19Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA2_LARTR5.343e-1278.05Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_SOLPN2.652e-1182.05Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_PHAVU4.523e-1175.61Ribulose bisphosphate carboxylase/oxygenase activa... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-102-001-D11-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665535 ID=EY665535; Name=EY665535; organism=Citrus sinensis; type=EST; length=468bp
CGAGTACGGAAACATGATTGTGCAAGAGCAAGAGAATGTGAAGAGAGTTC
AGTTGGCTGACAAGTATTTGAGTGAGGCCGCTCTTGGTGAAGCTAATGCA
GATGCTATTCAGAGTGGAAATTTCTATGGTTAGCCCCCTTGATCCTAGCT
AAGAGGCCTTGATGGGAGGCAAAGCAGCCCAGCAAATGAATGTTCCAGTT
CCTGAAGGATTTACTGATCCTACTGCAGAAAACTTTGATCCAACTGCAAG
AAGTGATGATGGAAGCTGCCAATACACGCTTTAGGCCTTGTTTCTAAGGG
TTGAGAAGTGTCGCACTTTGCTTAGGATGTGAGATATTCAAATAATATTG
TTGCATTTTCATTTCTTTGTTAATTAGAAAGAATCCTCTAATTTTGTGTT
ATATCACAACTCTTTATTCGATCTTTAAAAGGTGCTCCTTCTTACCATTA
TTTAAAAAAAAAAAAAAA
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