EH668992 | Citrus Genome Database

Overview


Name	EH668992
Unique Name	EH668992
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	139

Libraries


Library Name	Type
Citrus apomitic embryos (subtractive cDNA library)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig3020	contig	Csv1_Contig3020:218..356.	BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins

Homology

[Close]

BLAST of EH668992 vs. ExPASy Swiss-Prot
Match: NDHK_LEPVR (NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Lepidium virginicum GN=ndhK PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.539e-16
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 1

Query:    1 TSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGT 120
            TSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGT
Sbjct:   41 TSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGT 80

[Close]

BLAST of EH668992 vs. ExPASy Swiss-Prot
Match: NDHK_LACSA (NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Lactuca sativa GN=ndhK PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.539e-16
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 1

Query:    1 TSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGT 120
            TSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGT
Sbjct:   41 TSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGT 80

[Close]

BLAST of EH668992 vs. ExPASy Swiss-Prot
Match: NDHK_JASNU (NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Jasminum nudiflorum GN=ndhK PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.539e-16
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 1

Query:    1 TSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGT 120
            TSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGT
Sbjct:   41 TSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGT 80

[Close]

BLAST of EH668992 vs. ExPASy Swiss-Prot
Match: NDHK_IPOPU (NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Ipomoea purpurea GN=ndhK PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.539e-16
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 1

Query:    1 TSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGT 120
            TSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGT
Sbjct:   41 TSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGT 80

[Close]

BLAST of EH668992 vs. ExPASy Swiss-Prot
Match: NDHK_HORVU (NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Hordeum vulgare GN=ndhK PE=1 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 1.539e-16
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 1

Query:    1 TSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGT 120
            TSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGT
Sbjct:   41 TSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGT 80

[Close]

BLAST of EH668992 vs. ExPASy Swiss-Prot
Match: NDHK_HELAN (NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Helianthus annuus GN=ndhK PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.539e-16
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 1

Query:    1 TSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGT 120
            TSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGT
Sbjct:   41 TSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGT 80

[Close]

BLAST of EH668992 vs. ExPASy Swiss-Prot
Match: NDHK_GUIAB (NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Guizotia abyssinica GN=ndhK PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.539e-16
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 1

Query:    1 TSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGT 120
            TSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGT
Sbjct:   41 TSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGT 80

[Close]

BLAST of EH668992 vs. ExPASy Swiss-Prot
Match: NDHK_GOSHI (NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Gossypium hirsutum GN=ndhK PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.539e-16
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 1

Query:    1 TSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGT 120
            TSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGT
Sbjct:   41 TSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGT 80

[Close]

BLAST of EH668992 vs. ExPASy Swiss-Prot
Match: NDHK_GOSBA (NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Gossypium barbadense GN=ndhK PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.539e-16
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 1

Query:    1 TSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGT 120
            TSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGT
Sbjct:   41 TSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGT 80

[Close]

BLAST of EH668992 vs. ExPASy Swiss-Prot
Match: NDHK_FAGEA (NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Fagopyrum esculentum subsp. ancestrale GN=ndhK PE=3 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 1.539e-16
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 1

Query:    1 TSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGT 120
            TSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGT
Sbjct:   41 TSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGT 80

The following BLAST results are available for this feature:

BLAST of EH668992 vs. ExPASy Swiss-Prot

BLAST of EH668992 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 138


Match Name	E-value	Identity	Description
NDHK_LEPVR	1.539e-16	100.00	NAD(P)H-quinone oxidoreductase subunit K, chloropl...	[more]
NDHK_LACSA	1.539e-16	100.00	NAD(P)H-quinone oxidoreductase subunit K, chloropl...	[more]
NDHK_JASNU	1.539e-16	100.00	NAD(P)H-quinone oxidoreductase subunit K, chloropl...	[more]
NDHK_IPOPU	1.539e-16	100.00	NAD(P)H-quinone oxidoreductase subunit K, chloropl...	[more]
NDHK_HORVU	1.539e-16	100.00	NAD(P)H-quinone oxidoreductase subunit K, chloropl...	[more]
NDHK_HELAN	1.539e-16	100.00	NAD(P)H-quinone oxidoreductase subunit K, chloropl...	[more]
NDHK_GUIAB	1.539e-16	100.00	NAD(P)H-quinone oxidoreductase subunit K, chloropl...	[more]
NDHK_GOSHI	1.539e-16	100.00	NAD(P)H-quinone oxidoreductase subunit K, chloropl...	[more]
NDHK_GOSBA	1.539e-16	100.00	NAD(P)H-quinone oxidoreductase subunit K, chloropl...	[more]
NDHK_FAGEA	1.539e-16	100.00	NAD(P)H-quinone oxidoreductase subunit K, chloropl...	[more]

Pages

Properties


Property Name	Value
Genbank description	apomitic19 Citrus apomitic embryos (subtractive cDNA library) Citrus sinensis cDNA clone apomitic19 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EH668992 ID=EH668992; Name=EH668992; organism=Citrus sinensis; type=EST; length=139bp
ACCAGTTGTTGTTTCATTGAATTTGCTTCATTAATCGGCTCGCGGTTCGA
TTTTGACCGTTATGGGCTGGTACCAAGATCGAGCCCTAGACAGGCGGACC
TAATTTTAACAGCTGGTACCTGCCCGGGCGGCCGCTCGA