CX043281

Overview
NameCX043281
Unique NameCX043281
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length824
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig907 contig Csv1_Contig907:101..924. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043281 vs. ExPASy Swiss-Prot
Match: PSBO_CHLRE (Oxygen-evolving enhancer protein 1, chloroplastic OS=Chlamydomonas reinhardtii GN=PSBO PE=2 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 3.893e-56
Identity = 109/189 (57.67%), Postives = 131/189 (69.31%), Query Frame = 3
Query:  261 ATSALVVSGASAEGVPKRLTYDEIQSKTYMEVKGTGTANQCPTIDGGVDSFA-FKPGKYQAKKFCLEPTSFTVKAEGVNKNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDYAAVTVQLAGGERVPFLFTIKQLVASGKPENFGGEFLVPSYRGSSFLDPKGKGGSTGYDNAIALPA 824
            A +A  ++ A   G    LT+DEIQ  TY++VKG+G AN CP ++ G  +    K G Y+ + FC+EPTSFTVK E   K    +F  TKLMTRLTYTLD + G F+V  DG+ +  E DGIDYAA TVQL GGERV FLFTIKQ    G  +   G+FLVPSYRGSSFLDPKG+GGSTGYDNA+ALPA
Sbjct:   34 AAAAAALATAMVAGSANALTFDEIQGLTYLQVKGSGIANTCPVLESGTTNLKELKAGSYKLENFCIEPTSFTVKEESQFKGGETEFVKTKLMTRLTYTLDAMSGSFKVGSDGSAELKEDDGIDYAATTVQLPGGERVAFLFTIKQFDGKGTLDGIKGDFLVPSYRGSSFLDPKGRGGSTGYDNAVALPA 222          
BLAST of CX043281 vs. ExPASy Swiss-Prot
Match: PSBO_EUGGR (Oxygen-evolving enhancer protein 1, chloroplastic OS=Euglena gracilis GN=PSBO PE=1 SV=2)

HSP 1 Score: 206.068 bits (523), Expect = 1.999e-52
Identity = 107/196 (54.59%), Postives = 131/196 (66.84%), Query Frame = 3
Query:  243 IAGFALATSALVVSGASAEGV-PKRLTYDEIQSKTYMEVKGTGTANQCPTIDGGVDS-FAFKPGKYQAKKFCLEPTSFTVKAEGVNKNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDYAAVTVQLAGGERVPFLFTIKQLVASGKPENFGGEFLVPSYRGSSFLDPKGKGGSTGYDNAIALPA 824
            +AG   A  A ++  A A       LTYDE+QS +Y+EVK +G A  CP +  GV S  + K GKY+   +CLEP+SF VK     K    +F+ TKLMTRLTYTLD I     V  DG+    EKDG+DYAA TVQLAGGERVPFLFTIK L+A G    F G+F VPSYRG++FLDPKG+GG++GYD A+ALPA
Sbjct:   71 LAGAGRAMGAALIGAAVAGSANAASLTYDELQSLSYLEVKSSGIAGTCPVLADGVSSKLSLKAGKYEINNWCLEPSSFQVKLPPTEKQQVTEFERTKLMTRLTYTLDAISADLNVGGDGSWTIQEKDGLDYAATTVQLAGGERVPFLFTIKNLLAKGDAGQFLGQFDVPSYRGATFLDPKGRGGASGYDTAVALPA 266          
BLAST of CX043281 vs. ExPASy Swiss-Prot
Match: PSBO_THEEB (Photosystem II manganese-stabilizing polypeptide OS=Thermosynechococcus elongatus (strain BP-1) GN=psbO PE=1 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 3.537e-41
Identity = 87/173 (50.29%), Postives = 121/173 (69.94%), Query Frame = 3
Query:  333 QSKTYMEVKGTGTANQCPTIDGGV-DSFAFKPGK-YQAKKFCLEPTSFTVKAEGVNKNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDYAAVTVQLAGGERVPFLFTIKQLVASGKPE--------NFGGEFLVPSYRGSSFLDPKGKGGSTGYDNAIALP 821
            Q+ TY ++ GTG AN+CPT+D     ++     + Y+  + CL+PT+F VK E  NK    +F  TKL+TR T +LD+I+G  +V+ DG++ FVE+DGID+  VTVQ+AGGER+P LFT+K LVAS +P         +F GEF VPSYR ++FLDPKG+G ++GYD+AIALP
Sbjct:   29 QTLTYDDIVGTGLANKCPTLDDTARGAYPIDSSQTYRIARLCLQPTTFLVKEEPKNKRQEAEFVPTKLVTRETTSLDQIQGELKVNSDGSLTFVEEDGIDFQPVTVQMAGGERIPLLFTVKNLVASTQPNVTSITTSTDFKGEFNVPSYRTANFLDPKGRGLASGYDSAIALP 201          
BLAST of CX043281 vs. ExPASy Swiss-Prot
Match: PSBO_SYNEN (Photosystem II manganese-stabilizing polypeptide OS=Synechococcus elongatus naegeli GN=psbO PE=1 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 3.537e-41
Identity = 87/173 (50.29%), Postives = 121/173 (69.94%), Query Frame = 3
Query:  333 QSKTYMEVKGTGTANQCPTIDGGV-DSFAFKPGK-YQAKKFCLEPTSFTVKAEGVNKNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDYAAVTVQLAGGERVPFLFTIKQLVASGKPE--------NFGGEFLVPSYRGSSFLDPKGKGGSTGYDNAIALP 821
            Q+ TY ++ GTG AN+CPT+D     ++     + Y+  + CL+PT+F VK E  NK    +F  TKL+TR T +LD+I+G  +V+ DG++ FVE+DGID+  VTVQ+AGGER+P LFT+K LVAS +P         +F GEF VPSYR ++FLDPKG+G ++GYD+AIALP
Sbjct:   29 QTLTYDDIVGTGLANKCPTLDDTARGAYPIDSSQTYRIARLCLQPTTFLVKEEPKNKRQEAEFVPTKLVTRETTSLDQIQGELKVNSDGSLTFVEEDGIDFQPVTVQMAGGERIPLLFTVKNLVASTQPNVTSITTSTDFKGEFNVPSYRTANFLDPKGRGLASGYDSAIALP 201          
BLAST of CX043281 vs. ExPASy Swiss-Prot
Match: PSBO_ANASP (Photosystem II manganese-stabilizing polypeptide OS=Anabaena sp. (strain PCC 7120) GN=psbO PE=3 SV=2)

HSP 1 Score: 168.318 bits (425), Expect = 4.620e-41
Identity = 88/173 (50.87%), Postives = 115/173 (66.47%), Query Frame = 3
Query:  342 TYMEVKGTGTANQCP----TIDGGVDSFAFKPGKYQAKKFCLEPTSFTVKAEGVNKNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDYAAVTVQLAGGERVPFLFTIKQLVASGKP--------ENFGGEFLVPSYRGSSFLDPKGKGGSTGYDNAIALPA 824
            TY +++GTG AN+CP    T  G +   + K   Y  K+ CLEPT+F VK E  NK    +F   KL+TR T T+D++ G  + + D ++ FVEKDG+D+ A+TVQL GGERVPFLFTIK LVA  +P         +F G F VPSYRG++FLDPKG+G  +GYDNA+ALPA
Sbjct:   34 TYEQIRGTGLANKCPQLTETSRGSIPLDSSK--SYVLKELCLEPTNFFVKEEPANKRQTAEFVAGKLLTRYTSTIDQVSGDLKFNDDSSLTFVEKDGLDFQAITVQLPGGERVPFLFTIKNLVAQTQPGLSSLNTSTDFEGTFKVPSYRGAAFLDPKGRGVVSGYDNAVALPA 204          
BLAST of CX043281 vs. ExPASy Swiss-Prot
Match: PSBO_CYAA5 (Photosystem II manganese-stabilizing polypeptide OS=Cyanothece sp. (strain ATCC 51142) GN=psbO PE=3 SV=2)

HSP 1 Score: 156.762 bits (395), Expect = 1.391e-37
Identity = 85/174 (48.85%), Postives = 108/174 (62.07%), Query Frame = 3
Query:  333 QSKTYMEVKGTGTANQCPTIDGGV-DSFAFKPGK-YQAKKFCLEPTSFTVKAEGVNKNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDYAAVTVQLAGGERVPFLFTIKQLVASGKPE--------NFGGEFLVPSYRGSSFLDPKGKGGSTGYDNAIALPA 824
            Q  TY E+  TG AN+CP I      S   +PG+ Y     CLEP  + VK E VNK    ++   KL+TR T +L++I G   V  DG + F E+ GID+  VTVQL GGE+VPF FTIK LV   +P         +F G+F VPSYRG++FLDPKG+G +TGYDNA+ALPA
Sbjct:   32 QDLTYDEILNTGLANKCPQISEFTRGSIPIEPGQTYFVDDLCLEPQEYFVKEEPVNKRQEAEYVPGKLLTRYTTSLEQISGKITVDEDGVVTFYEEGGIDFQPVTVQLPGGEQVPFFFTIKNLVGKTEPGFSSINSSIDFEGDFRVPSYRGATFLDPKGRGLATGYDNAVALPA 205          
BLAST of CX043281 vs. ExPASy Swiss-Prot
Match: PSBO_SYNY3 (Photosystem II manganese-stabilizing polypeptide OS=Synechocystis sp. (strain PCC 6803) GN=psbO PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.880e-34
Identity = 77/171 (45.03%), Postives = 102/171 (59.65%), Query Frame = 3
Query:  342 TYMEVKGTGTANQCPTIDGGV-DSFAFKPG-KYQAKKFCLEPTSFTVKAEGVNKNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDYAAVTVQLAGGERVPFLFTIKQLVASGKP--------ENFGGEFLVPSYRGSSFLDPKGKGGSTGYDNAIALPA 824
            TY ++  TG AN CP I      +   +P  KY    FC+EP  + VK E VNK    ++   K++TR T +L++I G   V  DGT+ F EKDGID+  +TV L GGE VPF FT+K    + +P         +F G+F VPSYRG+ FLDPK +G  TGYDNA+ALP+
Sbjct:   35 TYDDIVNTGLANVCPEISSFTRGTIEVEPNTKYFVSDFCMEPQEYFVKEEPVNKRQKAEYVKGKVLTRQTTSLEQIRGSIAVGADGTLTFKEKDGIDFQPITVLLPGGEEVPFFFTVKNFTGTTEPGFTSINSSTDFVGDFNVPSYRGAGFLDPKARGLYTGYDNAVALPS 205          
BLAST of CX043281 vs. ExPASy Swiss-Prot
Match: PSBO_SYNE7 (Photosystem II manganese-stabilizing polypeptide OS=Synechococcus elongatus (strain PCC 7942) GN=psbO PE=1 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.298e-32
Identity = 76/179 (42.46%), Postives = 108/179 (60.34%), Query Frame = 3
Query:  318 TYDEIQSKTYMEVKGTGTANQCPTI-DGGVDSFAFKPGK-YQAKKFCLEPTSFTVKAEGVNKNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDYAAVTVQLAGGERVPFLFTIKQLVAS--------GKPENFGGEFLVPSYRGSSFLDPKGKGGSTGYDNAIALPA 824
            T  ++ + TY ++K TG AN+C ++ +    +   + GK Y     CLEP  F VK E  NK    +F   K++TR T +LD++ G   +  DGT+ F EK GID+ A+TV L GGE VPFLFT+K LVAS            +  G + VPSYR S+FLDPK +G +TGY++A+A+P+
Sbjct:   26 TAADLGTLTYDQIKDTGLANKCLSLKESARGTIPLEAGKKYALTDLCLEPQEFFVKEEPGNKRQKAEFVPGKVLTRYTSSLDQVYGDLALKADGTVSFTEKGGIDFQAITVLLPGGEEVPFLFTVKGLVASTSEPATSINTSTDLRGGYRVPSYRTSNFLDPKARGLTTGYESAVAIPS 204          
BLAST of CX043281 vs. ExPASy Swiss-Prot
Match: PSBO_POPEU (Oxygen-evolving enhancer protein 1, chloroplastic (Fragments) OS=Populus euphratica GN=PSBO PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 7.935e-17
Identity = 55/116 (47.41%), Postives = 58/116 (50.00%), Query Frame = 3
Query:  477 KAEGVNKNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDYAAVTVQLAGGERVPFLFTIKQLVASGKPENFGGEFLVPSYRGSSFLDPKGKGGSTGYDNAIALPA 824
            KAEG+NKN+PPDFQ TKLMTR                         DGIDYAAVTVQL GGERVPFLFTI                               KGGSTGYDNA+ALPA
Sbjct:   10 KAEGINKNSPPDFQKTKLMTR-------------------------DGIDYAAVTVQLPGGERVPFLFTI-------------------------------KGGSTGYDNAVALPA 69          
The following BLAST results are available for this feature:
BLAST of CX043281 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
PSBO_CHLRE3.893e-5657.67Oxygen-evolving enhancer protein 1, chloroplastic ... [more]
PSBO_EUGGR1.999e-5254.59Oxygen-evolving enhancer protein 1, chloroplastic ... [more]
PSBO_THEEB3.537e-4150.29Photosystem II manganese-stabilizing polypeptide O... [more]
PSBO_SYNEN3.537e-4150.29Photosystem II manganese-stabilizing polypeptide O... [more]
PSBO_ANASP4.620e-4150.87Photosystem II manganese-stabilizing polypeptide O... [more]
PSBO_CYAA51.391e-3748.85Photosystem II manganese-stabilizing polypeptide O... [more]
PSBO_SYNY31.880e-3445.03Photosystem II manganese-stabilizing polypeptide O... [more]
PSBO_SYNE72.298e-3242.46Photosystem II manganese-stabilizing polypeptide O... [more]
PSBO_POPEU7.935e-1747.41Oxygen-evolving enhancer protein 1, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_10A09_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-10A09-B18-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043281 ID=CX043281; Name=CX043281; organism=Citrus sinensis; type=EST; length=824bp
GGATACTAGCAAGTAACCCACAAGTGGTAGGGAGCAAGATGGCAGCCTCG
TTACAAGCCGCAGCTACACTGATGCAACCCACCAAGGTGGGTGTGGTACC
CGCTCGCAGCAGCAGCCTGCAGCTGAGGTCTTCACAGAGCGTTTCGAAGG
CTTTTGGTGTCGACTCAGCTGGTGCTAGGATCTCTTGCTCTTTGAATAAT
GACTTGAAGGATTTGGCTCAGAAATGTGTTGATGCTACCAAGATCGCTGG
CTTTGCCCTCGCCACTTCTGCTCTCGTCGTTTCGGGAGCAAGTGCTGAAG
GTGTTCCAAAGAGGCTAACCTATGATGAAATCCAGAGCAAGACATACATG
GAAGTGAAGGGAACCGGAACTGCTAACCAGTGCCCAACCATTGATGGCGG
AGTTGACTCTTTTGCCTTCAAACCTGGCAAATACCAGGCTAAGAAGTTCT
GCCTAGAACCAACTTCCTTCACTGTCAAGGCTGAGGGTGTCAACAAGAAT
GCCCCACCAGATTTCCAGAACACCAAGCTCATGACCCGCCTTACCTACAC
CCTTGACGAGATTGAGGGACCTTTTGAAGTGTCCCCCGATGGCACCATTA
AGTTTGTGGAGAAGGATGGAATTGACTATGCTGCTGTGACAGTTCAGCTG
GCTGGAGGCGAGCGTGTGCCCTTCCTTTTCACCATCAAACAATTGGTAGC
ATCAGGCAAACCTGAGAATTTCGGAGGAGAATTCCTGGTACCATCTTACC
GTGGATCATCCTTCTTGGACCCAAAGGGAAAGGGTGGTTCAACTGGTTAT
GACAATGCTATTGCATTGCCTGCC
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