EY665489

Overview
NameEY665489
Unique NameEY665489
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length862
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665489 vs. ExPASy Swiss-Prot
Match: RCA_ORYSJ (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Oryza sativa subsp. japonica GN=RCA PE=1 SV=2)

HSP 1 Score: 276.559 bits (706), Expect = 1.282e-73
Identity = 151/223 (67.71%), Postives = 172/223 (77.13%), Query Frame = 3
Query:   78 GAATSVPSSSFFGTSLKKVGSRIPPSKVPSAS---FKITA-EVDENKQTKKDRWKGLAYDESDDQQDITIGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLLNIKVPLILGIWGGQGQRKSFQCGLVFAKMGINPIMMNAGKLESCNAGKNPANLIRQKVREAPEIIKKGKRCRLQITDLECRNLAEGG 734
            GA  S P++ F G  LKK  +        S++   FK+ A E+DE KQT +DRWKGLAYD SDDQQDIT GKG VDSLFQAP G GTH AV+SSY+Y+SQGLRTY+ DNTM G YIAPAFMDKLVVHI+KNFM+L NIKVPLILGIWGG+GQ KSFQC LVFAKMGINPIMM+AG+LES NAG+ PA LIRQ+ REA +IIKKGK C L I DL+      GG
Sbjct:   10 GAPASTPTN-FLGKKLKKQVTSAVNYHGKSSNINRFKVMAKELDEGKQTDQDRWKGLAYDISDDQQDITRGKGFVDSLFQAPTGDGTHEAVLSSYEYLSQGLRTYDFDNTMGGFYIAPAFMDKLVVHISKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGE-PAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGG 230          
BLAST of EY665489 vs. ExPASy Swiss-Prot
Match: RCA_MAIZE (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Zea mays GN=RCA1 PE=2 SV=3)

HSP 1 Score: 267.7 bits (683), Expect = 5.957e-71
Identity = 148/227 (65.20%), Postives = 169/227 (74.45%), Query Frame = 3
Query:   78 GAATSVPS-SSFFGTSLKK--VGSRIP---PSKVPSASFKITA--EVDENKQTKKDRWKGLAYDESDDQQDITIGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLLNIKVPLILGIWGGQGQRKSFQCGLVFAKMGINPIMMNAGKLESCNAGKNPANLIRQKVREAPEIIKKGKRCRLQITDLECRNLAEGG 734
            GA  S P+ SSF G  L K  V + +     S   ++ FK  A  EVDE KQT +DRWKGLAYD SDDQQDIT GKG VD+LFQAPMG GTH AV+SSYDYISQG ++YN DN MDG YIA  FMDKLVVH++KNFM+L NIKVPLILGIWGG+GQ KSFQC LVFAKMGI PIMM+AG+LES NAG+ PA LIRQ+ REA ++IKKGK   L I DL+      GG
Sbjct:   10 GAPASTPTRSSFLGKKLNKPQVSAAVTYHGKSSSSNSRFKAMAAKEVDETKQTDEDRWKGLAYDISDDQQDITRGKGLVDNLFQAPMGDGTHVAVLSSYDYISQGQKSYNFDNMMDGFYIAKGFMDKLVVHLSKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGITPIMMSAGELESGNAGE-PAKLIRQRYREASDLIKKGKMSCLFINDLDAGAGRMGG 235          
BLAST of EY665489 vs. ExPASy Swiss-Prot
Match: RCAB_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase B, chloroplastic OS=Hordeum vulgare GN=RCAB PE=2 SV=1)

HSP 1 Score: 266.929 bits (681), Expect = 1.016e-70
Identity = 144/222 (64.86%), Postives = 165/222 (74.32%), Query Frame = 3
Query:   78 GAATSVPSSSFFGTSLKKV---GSRIPPSKVPSASFKITAEVDENKQTKKDRWKGLAYDESDDQQDITIGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLLNIKVPLILGIWGGQGQRKSFQCGLVFAKMGINPIMMNAGKLESCNAGKNPANLIRQKVREAPEIIKKGKRCRLQITDLECRNLAEGG 734
            GA  S P+  F G  +K     G+++    V   + K   E+D+ KQT  DRWKGLAYD SDDQQDIT GKG VDSLFQAPMG GTH A++SSY+YISQGLR Y+ DNTMDGLYIAPAFMDKL+VH+ KNFM+L NIKVPLILGIWGG+GQ KSFQC LVFAKMGINPIMM+AG+LES N    PA LIRQ+ REA +II KGK C L I DL+      GG
Sbjct:   10 GAPASTPTI-FLGKKVKNYYHGGNKMKSRVVRVMAAK--KELDQGKQTDADRWKGLAYDISDDQQDITRGKGIVDSLFQAPMGDGTHEAILSSYEYISQGLRKYDFDNTMDGLYIAPAFMDKLIVHLAKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNG--EPAKLIRQRYREAADIINKGKMCCLFINDLDAGAGRMGG 226          
BLAST of EY665489 vs. ExPASy Swiss-Prot
Match: RCAA_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase A, chloroplastic OS=Hordeum vulgare GN=RCAA PE=2 SV=1)

HSP 1 Score: 262.692 bits (670), Expect = 1.916e-69
Identity = 143/222 (64.41%), Postives = 166/222 (74.77%), Query Frame = 3
Query:   78 GAATSVPSSSFFGTSLKK-VGSRIPPSKVPSASFKITAEVDENKQTKK--DRWKGLAYDESDDQQDITIGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLLNIKVPLILGIWGGQGQRKSFQCGLVFAKMGINPIMMNAGKLESCNAGKNPANLIRQKVREAPEIIKKGKRCRLQITDLECRNLAEGG 734
            GA  S P++ F G  LKK V S +      S + + T    EN   K+  D+WKGLAYD SDDQQDIT GKG VDSLFQAP G GTH AV+SSY+Y+SQGLR Y+ DNTM G YIAPAFMDKLVVH++KNFM+L NIK+PLILGIWGG+GQ KSFQC LVFAKMGINPIMM+AG+LES NAG+ PA LIRQ+ REA ++IKKGK C L I DL+      GG
Sbjct:   10 GAPASTPTN-FLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTDKWKGLAYDISDDQQDITRGKGIVDSLFQAPTGHGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGE-PAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGG 229          
BLAST of EY665489 vs. ExPASy Swiss-Prot
Match: RCA_SPIOL (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 257.684 bits (657), Expect = 6.164e-68
Identity = 135/223 (60.54%), Postives = 162/223 (72.65%), Query Frame = 3
Query:   45 AAAVPLSFNGFGAATSVPSSSFFGTSLKK-VGSRIPPSKVPSASFKITAEVDENKQTKKDRWKGLAYDESDDQQDITIGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLLNIKVPLILGIWGGQGQRKSFQCGLVFAKMGINPIMMNAGKLESCNAGKNPANLIRQKVREAPEIIKKGKRCRLQITDLE 710
            A   PL+ NG  A  SVP+S F G+SLKK    R P S   S +  +T +  EN++   D+W  LA D SDDQ DI  GKG VDSLFQAP   GTH  + SS++Y SQGLR Y++DN +   YIAPAFMDKLVVHITKNF++L NIK+PLILG+WGG+GQ KSFQC LVFAK+GINPIMM+AG+LES NAG+ PA LIRQ+ REA ++I KGK C L I DLE
Sbjct:   11 ATRAPLNLNGSSAGASVPTSGFLGSSLKKHTNVRFPSS---SRTTSMTVKAAENEEKNTDKWAHLAKDFSDDQLDIRRGKGMVDSLFQAPADAGTHVPIQSSFEYESQGLRKYDIDNMLGDFYIAPAFMDKLVVHITKNFLNLPNIKIPLILGVWGGKGQGKSFQCELVFAKLGINPIMMSAGELESGNAGE-PAKLIRQRYREAADLIAKGKMCALFINDLE 229          
BLAST of EY665489 vs. ExPASy Swiss-Prot
Match: RCA_CHLRE (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Chlamydomonas reinhardtii PE=2 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 2.693e-47
Identity = 102/195 (52.31%), Postives = 132/195 (67.69%), Query Frame = 3
Query:  135 GSRIPPSKVPSASFKITAEVDENKQTKKDRWKGL--AYDESDDQQDITIGKGAVDSLFQAPMGTG-THYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLLNIKVPLILGIWGGQGQRKSFQCGLVFAKMGINPIMMNAGKLESCNAGKNPANLIRQKVREAPEIIKKGKRCRLQITDLE 710
            G+R+    V  A  ++ A      + +  RW+ +    D SDDQQDIT G+  VD LFQ   G G TH AV+SS +Y+SQ   ++N  N  DG YI+PAF+DK+ +HI KNFM L  IKVPLILGIWGG+GQ K+FQC L + K+GI PI+M+AG+LES NAG+ PA LIR + REA +IIKKG+ C L I DL+
Sbjct:   17 GARVATRSVRRAQLQVVAP----SRKQMGRWRSIDAGVDASDDQQDITRGREMVDDLFQGGFGAGGTHNAVLSSQEYLSQSRASFN--NIEDGFYISPAFLDKMTIHIAKNFMDLPKIKVPLILGIWGGKGQGKTFQCALAYKKLGIAPIVMSAGELESGNAGE-PAKLIRTRYREASDIIKKGRMCSLFINDLD 204          
BLAST of EY665489 vs. ExPASy Swiss-Prot
Match: RCA_ANASC (Ribulose bisphosphate carboxylase/oxygenase activase OS=Anabaena sp. (strain CA / ATCC 33047) GN=rca PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 7.135e-24
Identity = 57/102 (55.88%), Postives = 76/102 (74.51%), Query Frame = 3
Query:  408 YIAPAFMDKLVVHITKNFMSLLNIKVPLILGIWGGQGQRKSFQCGLVFAKMGINPIMMNAGKLESCNAGKNPANLIRQKVREAPEIIK-KGKRCRLQITDLE 710
            YIAP F+DKL VHITKNF++L  ++VPLILGI G +G+ K+FQC L F KMG+   +++ G+LES +AG +PA LIR + RE  E+IK +GK C L I DL+
Sbjct:    4 YIAPRFLDKLAVHITKNFLNLPGVRVPLILGIHGRKGEGKTFQCELAFEKMGVEVTLISGGELESPDAG-DPARLIRLRYRETAELIKVRGKMCVLMINDLD 104          
BLAST of EY665489 vs. ExPASy Swiss-Prot
Match: RCA_ANASP (Ribulose bisphosphate carboxylase/oxygenase activase OS=Anabaena sp. (strain PCC 7120) GN=rca PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 9.319e-24
Identity = 57/102 (55.88%), Postives = 76/102 (74.51%), Query Frame = 3
Query:  408 YIAPAFMDKLVVHITKNFMSLLNIKVPLILGIWGGQGQRKSFQCGLVFAKMGINPIMMNAGKLESCNAGKNPANLIRQKVREAPEIIK-KGKRCRLQITDLE 710
            YIAP F+DKL VHITKNF+++  ++VPLILGI G +G+ K+FQC L F KMGI   +++ G+LES +AG +PA LIR + RE  E+IK +GK C L I DL+
Sbjct:    4 YIAPRFLDKLAVHITKNFLNIPGVRVPLILGIHGRKGEGKTFQCELAFEKMGIEVTLISGGELESPDAG-DPARLIRLRYRETAELIKVRGKMCVLMINDLD 104          
BLAST of EY665489 vs. ExPASy Swiss-Prot
Match: RCA_ARAHY (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic (Fragments) OS=Arachis hypogaea GN=RCA PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.757e-22
Identity = 69/134 (51.49%), Postives = 75/134 (55.97%), Query Frame = 3
Query:  231 GLAYDESDDQQDITIGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLLNIKVPLILGIWGGQGQRKSFQCGLVFAKMGINPIMMNAGKLESCNAGKNPANL 632
            GLAYD SDDQQDIT  +G VDSLFQAPM  GTHYAVMSSY+YISQGLR                                    VPLILGIWGG              KMGINPIMM+AG+LES NAG+ PA +
Sbjct:    1 GLAYDISDDQQDIT--RGMVDSLFQAPMNDGTHYAVMSSYEYISQGLR------------------------------------VPLILGIWGG--------------KMGINPIMMSAGELESGNAGE-PAKM 81          
The following BLAST results are available for this feature:
BLAST of EY665489 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
RCA_ORYSJ1.282e-7367.71Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_MAIZE5.957e-7165.20Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCAB_HORVU1.016e-7064.86Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCAA_HORVU1.916e-6964.41Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_SPIOL6.164e-6860.54Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_CHLRE2.693e-4752.31Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ANASC7.135e-2455.88Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ANASP9.319e-2455.88Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ARAHY1.757e-2251.49Ribulose bisphosphate carboxylase/oxygenase activa... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-102-002-G06-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665489 ID=EY665489; Name=EY665489; organism=Citrus sinensis; type=EST; length=862bp
CCACGCGTCCGAATCACAGCCGTCCAATTCCCCCTTTACTAATGGCTGCT
GCTGTACCGCTGAGCTTCAATGGCTTTGGTGCTGCAACCTCTGTCCCAAG
CTCATCTTTCTTTGGCACCAGCTTGAAGAAGGTAGGGTCAAGGATCCCCC
CATCCAAGGTCCCTTCTGCGAGCTTCAAGATTACTGCTGAAGTCGATGAG
AACAAGCAGACCAAGAAGGACAGATGGAAGGGCCTTGCCTACGACGAATC
TGATGACCAGCAAGACATCACCATAGGAAAAGGTGCTGTGGACTCTCTGT
TCCAAGCCCCCATGGGAACCGGAACTCACTATGCTGTCATGAGTTCTTAT
GACTACATCAGCCAAGGTCTCCGCACATACAACTTGGACAACACGATGGA
CGGTCTCTACATTGCCCCTGCTTTCATGGACAAGCTTGTTGTTCACATCA
CCAAGAACTTCATGTCCCTGCTCAACATCAAGGTTCCTCTCATCTTGGGT
ATATGGGGAGGGCAAGGGCAAAGAAAATCATTCCAATGTGGACTTGTTTT
CGCCAAGATGGGCATCAACCCAATTATGATGAATGCCGGAAAATTGGAAA
GCTGCAATGCTGGGAAAAACCCCGCTAACTTGATCAGGCAAAAGGTACGT
GAAGCACCTGAAATTATCAAAAAGGGAAAAAGGTGCCGCCTCCAGATCAC
TGATCTTGAATGCAGGAACCTGGCCGAAGGGGGGGCCCCCCCCCAAAGCC
CATTAACAACCAAAGGGTTAACCCCCCACCCATGAAACCTGGCTAATAAA
ACCCAACTTGGGTCCCACTCCCCCGGGATTTGTACACCCCAAGGGGGGAA
AAACCCCCCGTG
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