CX043279

Overview
NameCX043279
Unique NameCX043279
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length740
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043279 vs. ExPASy Swiss-Prot
Match: NAMA_CLOAB (NADPH dehydrogenase OS=Clostridium acetobutylicum GN=namA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.407e-12
Identity = 33/52 (63.46%), Postives = 40/52 (76.92%), Query Frame = -3
Query:  583 AIEAGFDGIELHGAHGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAV 738
            A +AGFD IE+HGAHGYLI+QF+    N R D+YGGS ENR RF  E++EAV
Sbjct:  151 AEKAGFDAIEIHGAHGYLINQFLSPLSNFRDDEYGGSTENRTRFLKEVLEAV 202          
BLAST of CX043279 vs. ExPASy Swiss-Prot
Match: NAMA_BACWK (NADPH dehydrogenase OS=Bacillus weihenstephanensis (strain KBAB4) GN=namA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.093e-11
Identity = 63/191 (32.98%), Postives = 88/191 (46.07%), Query Frame = -3
Query:  220 AGFDGIELHGAHGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYMESGDSNPEALGL--------YMAE------SLNKYGILYCHM-VEPRMKTVGEKSECPHSLLPMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRLFLANPDLPR------RFELNAP 729
            AG D IELHGAHGYLI++F+    N R D+YGGS ENR RF  EI++AV NE+    + +R+S       + D +P+ L +        +M E        +   ++  H+ V P  +    K    H    +  A     L+  G   E   + +    ADL+  GR  L NP  PR       FEL  P
Sbjct:  156 AGVDVIELHGAHGYLINEFLSPLSNKRIDEYGGSPENRYRFLREIIDAV-NEVWNGPLFVRIS-------ANDYHPDGLTVQDYVQYTGWMKEQGVDLIDCSSGAVVPAHIDVYPGYQVQYAKHIKEH----VNIATGAVGLITTGSQAE---QILNNNEADLIFIGRELLRNPYFPRIAANELGFELKEP 331          
BLAST of CX043279 vs. ExPASy Swiss-Prot
Match: NAMA_BACSU (NADPH dehydrogenase OS=Bacillus subtilis GN=namA PE=1 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 2.435e-11
Identity = 54/170 (31.76%), Postives = 83/170 (48.82%), Query Frame = -3
Query:  241 AIEAGFDGIELHGAHGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYMESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTVGEKSECPHSLLPMRKAFKGTFLVAGGYDR-EDGNKA---IAEGRADLVVYGRLFLANPDLPR 738
            A EAGFD IE+H AHGYLI +F+    N RTD+YGGS ENR RF  EI++ V  ++    + +R+S  ++Y + G    + +G   A+ + + G+         +          + +    K  +   +  G      DG+ A   +  GRADL+  GR  L +P   R
Sbjct:  153 AKEAGFDVIEIHAAHGYLIHEFLSPLSNHRTDEYGGSPENRYRFLREIIDEV-KQVWDGPLFVRVSA-SDYTDKGLDIADHIG--FAKWMKEQGVDLIDCSSGALVHADINVFPGYQVSFAEKIREQADMATGAVGMITDGSMAEEILQNGRADLIFIGRELLRDPFFAR 318          
BLAST of CX043279 vs. ExPASy Swiss-Prot
Match: NAMA_BACA2 (NADPH dehydrogenase OS=Bacillus amyloliquefaciens (strain FZB42) GN=namA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.153e-11
Identity = 38/75 (50.67%), Postives = 50/75 (66.67%), Query Frame = -3
Query:  514 AIEAGFDGIELHGAHGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYMESG 738
            A EAGFD IELH AHGYL+ +F+    N RTD+YGGS ENR RF  E +EAV  E+    + +R+S  ++Y + G
Sbjct:  153 AKEAGFDIIELHAAHGYLMHEFLSPLSNHRTDEYGGSHENRYRFLGETIEAV-KEVWDGPLFVRISA-SDYTDKG 225          
The following BLAST results are available for this feature:
BLAST of CX043279 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
NAMA_CLOAB6.407e-1263.46NADPH dehydrogenase OS=Clostridium acetobutylicum ... [more]
NAMA_BACWK1.093e-1132.98NADPH dehydrogenase OS=Bacillus weihenstephanensis... [more]
NAMA_BACSU2.435e-1131.76NADPH dehydrogenase OS=Bacillus subtilis GN=namA P... [more]
NAMA_BACA24.153e-1150.67NADPH dehydrogenase OS=Bacillus amyloliquefaciens ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_10A08_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-10A08-B16-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043279 ID=CX043279; Name=CX043279; organism=Citrus sinensis; type=EST; length=740bp
CTTACGCCAATACAATTTTATTGAGATAACCTATATTGGCTTTTACATAA
ACACAGTACATCTATAAACAATCAGAAAACAGGATTAAATCCGAGATAAT
GCTTTATCAGTCTAATCATTTTTCTTGGTAACCAAAGAAGAGGTGTTGAG
AAATGGATAATCTGTGTAACCAACAACAGGATCGGATGTGTAGAATGTTT
CTCTGTTGTACTTATTGAGCGGAGCATTGAGCTCAAATCTCCTGGGTAAA
TCTGGATTAGCCAAGAACAAGCGACCATAAACAACAAGATCTGCACGGCC
TTCAGCAATAGCTTTGTTTCCATCTTCCCTGTCATAACCCCCAGCGACAA
GAAAAGTACCCTTGAAAGCCTTTCTCATGGGCAGCAAACTGTGAGGACAT
TCAGATTTTTCTCCAACTGTTTTCATCCTTGGCTCAACCATGTGACAATA
GAGGATACCATATTTGTTCAAGGATTCTGCCATGTAAAGACCTAAAGCTT
CTGGGTTAGAGTCTCCTGATTCCATATAGTTTGCAAACGGAGATAGTCTT
ATCCCAACCCTATCTGCCCCTATTTCATTGGAAACAGCTTCAACTATTTC
TAAAGCAAAACGGCAACGATTCTCTAAGGATCCTCCATACTGGTCTGTTC
GATCATTCACTTGATCCTTCATAAATTGGTCAATTAGGTAGCCATGTGCA
CCGTGGAGCTCAATGCCATCAAAACCAGCCTCAATTGCGT
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