CX043278

Overview
NameCX043278
Unique NameCX043278
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length728
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1271 contig Csv1_Contig1271:145..873. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043278 vs. ExPASy Swiss-Prot
Match: NAMA_LISMC (NADPH dehydrogenase OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=namA PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.517e-21
Identity = 72/219 (32.88%), Postives = 104/219 (47.49%), Query Frame = 1
Query:    4 HRVVLAPLTRQRSYNN---VPQPHAILYYSQRTTKGGLLIAEATGVSDTAQGYPDTPGIWTKEQVEAWKPIVDAVHAKGGIFFCQIWHVGR---VSNQDYQPNGQAPISSTDKPLTPQIRANGVDIAQFTPPRRLRTDEIPQIVNDFRLAARNAIEAGFDGIELHGAHGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLS 642
            +R+V++P+      N        H   Y S+     GL+I EAT V +  +      G+W  EQV A K +VD +H  G     Q+ H GR   +  +   P+  A    +DKP+                   L  + I ++V DF+ AA  A EAGFD IE+H AHGYLI QF+    N R D YGG   NR +   +I++AV  E+    + +R+S
Sbjct:   17 NRIVMSPMCMYSVENKDGIATDFHFAHYVSRAAGGTGLVILEATAVQEVGRISEFDLGLWNDEQVPALKKLVDGLHYHGAKAGIQLAHAGRKAVLPGEIVAPSAIAFDEKSDKPV------------------ELTKEAIKEVVADFKRAAYRAKEAGFDVIEIHAAHGYLIHQFLSPITNRREDNYGGPAGNRYKILSDIIKAV-KEVWDGPIIVRVS 216          
BLAST of CX043278 vs. ExPASy Swiss-Prot
Match: NAMA_LISW6 (NADPH dehydrogenase OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=namA PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.322e-21
Identity = 70/216 (32.41%), Postives = 103/216 (47.69%), Query Frame = 1
Query:    4 HRVVLAPLTRQRSYNN---VPQPHAILYYSQRTTKGGLLIAEATGVSDTAQGYPDTPGIWTKEQVEAWKPIVDAVHAKGGIFFCQIWHVGRVSNQDYQPNGQAPISSTDKPLTPQIRANGVDIAQFTPPRRLRTDEIPQIVNDFRLAARNAIEAGFDGIELHGAHGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLS 642
            +R+V++P+      N        H   Y S+     GL+I EAT V +  +      G+W  EQV A K +VD +H+ G     Q+ H GR +    +    + I+  +K   P                 L  + I ++V DF+ AA  A EAGFD IE+H AHGYLI QF+    N R D YGG   NR +   +I++AV  E+    + +R+S
Sbjct:   17 NRIVMSPMCMYSVENKDGIATDFHFAHYVSRAAGGTGLVILEATAVQEVGRISEFDLGLWNDEQVPALKHLVDGLHSHGAKAGIQLAHAGRKAVLPGEIVAPSAIAYDEKSAKPV---------------ELTKEAIKEVVADFKRAAYRAKEAGFDVIEIHAAHGYLIHQFLSPITNRREDNYGGPAGNRYKILSDIIKAV-KEVWDGPIIVRVS 216          
BLAST of CX043278 vs. ExPASy Swiss-Prot
Match: NAMA_GEOKA (NADPH dehydrogenase OS=Geobacillus kaustophilus GN=namA PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.322e-21
Identity = 67/209 (32.06%), Postives = 102/209 (48.80%), Query Frame = 1
Query:   64 HAILYYSQRTTKGGLLIAEATGVSDTAQGYPDTPGIWTKEQVEAWKPIVDAVHAKGGIFFCQIWHVGRVSNQDYQPNGQAPISSTDKPLTPQIRANGVDIAQFTPPRRLRTDEIPQIVNDFRLAARNAIEAGFDGIELHGAHGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYMESGDSNPEAL 690
            H I Y ++   + GL+I EATGV+   +      GIW+ + +   + +V  V   G     Q+ H GR S    +    + +   D   TP               + +   +I + V  F+  AR A EAGFD IE+H AHGYLI++F+    N R D+YGGS ENR RF  E+++AV  E+    + +R+S       + D +P+ L
Sbjct:   41 HKIHYPARAVGQVGLIIVEATGVTPQGRISERDLGIWSDDHIAGLRELVGLVKEHGAAIGIQLAHAGRKSQVPGEIIAPSAVPFDDSSPTP---------------KEMTKADIEETVQAFQNGARRAKEAGFDVIEIHAAHGYLINEFLSPLSNRRQDEYGGSPENRYRFLGEVIDAV-REVWDGPLFVRIS-------ASDYHPDGL 226          
BLAST of CX043278 vs. ExPASy Swiss-Prot
Match: OYEC_SCHPO (Putative NADPH dehydrogenase C23G7.10c OS=Schizosaccharomyces pombe GN=SPBC23G7.10c PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.249e-20
Identity = 55/172 (31.98%), Postives = 87/172 (50.58%), Query Frame = 1
Query:  103 GLLIAEATGVSDTAQGYPDTPGIWTKEQVEAWKPIVDAVHAKGGIFFCQIWHVGRVSNQDYQPNGQAPISSTDKPLTPQIRANGVDI--AQFTPPRRLRTDEIPQIVNDFRLAARNAIEAGFDGIELHGAHGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEI 612
            GL++ EAT VS   +  P+  G+W + Q++  + IV+  H++      Q+ H GR ++      G    +         +     D        P +L   +  ++V+ F +AA+ A+E GFD IE+HGAHGYLI   +    NDR D+YGG+ E R  F +E+V +V   I
Sbjct:   81 GLVMVEATAVSPEGRISPNDSGLWMESQMKPLRRIVEFAHSQNQKIGIQLAHAGRKASTTAPYRGYTVATEAQGGWENDVYGPNEDRWDENHAQPHKLTEKQYDELVDKFVVAAKRAVEIGFDVIEIHGAHGYLISSTVSPATNDRNDKYGGTFEKRILFPMEVVHSVRKAI 252          
BLAST of CX043278 vs. ExPASy Swiss-Prot
Match: NAMA_BACC2 (NADPH dehydrogenase OS=Bacillus cereus (strain G9842) GN=namA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.249e-20
Identity = 73/235 (31.06%), Postives = 112/235 (47.66%), Query Frame = 1
Query:    4 HRVVLAPLTRQRSYNN---VPQPHAILYYSQRTTKGGLLIAEATGVSDTAQGYPDTPGIWTKEQVEAWKPIVDAVHAKGGIFFCQIWHVGR---VSNQDYQPNGQAPISSTDKPLTPQIRANGVDIAQFTPPRRLRTDEIPQIVNDFRLAARNAIEAGFDGIELHGAHGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYMESGDSNPEAL 690
            +R+V++P+    S N    V   H I Y ++   + GL++ EAT V    +      GIW    +E        +H  G     Q+ H GR   +    + P+   P S T K                  P  +   +I + +  F+ AA  + +AGFD IELHGAHGYLI++F+    N RTD+YGGS ENR RF  EI+++V N++    + +R+S       + D +P+ L
Sbjct:   18 NRIVMSPMCMYSSGNEDGRVTNFHLIHYGTRAAGQVGLVMVEATAVLAEGRISNKDLGIWDDNLIEGLHKTTTFIHDNGAKAAIQLAHAGRKAELGTNAFAPSA-IPFSDTMKI-----------------PVEMNIQQIKETILAFQRAALRSKQAGFDVIELHGAHGYLINEFLSPLTNKRTDEYGGSPENRYRFLREIIDSV-NKVWDGPIFVRIS-------ANDYHPDGL 226          
BLAST of CX043278 vs. ExPASy Swiss-Prot
Match: NAMA_LISMO (NADPH dehydrogenase OS=Listeria monocytogenes GN=namA PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.631e-20
Identity = 71/219 (32.42%), Postives = 103/219 (47.03%), Query Frame = 1
Query:    4 HRVVLAPLTRQRSYNN---VPQPHAILYYSQRTTKGGLLIAEATGVSDTAQGYPDTPGIWTKEQVEAWKPIVDAVHAKGGIFFCQIWHVGR---VSNQDYQPNGQAPISSTDKPLTPQIRANGVDIAQFTPPRRLRTDEIPQIVNDFRLAARNAIEAGFDGIELHGAHGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLS 642
            +R+V++P+      N        H   Y S+     GL+I EAT V +  +      G+W  EQV A K +V  +H  G     Q+ H GR   +  +   P+  A    +DKP+                   L  + I ++V DF+ AA  A EAGFD IE+H AHGYLI QF+    N R D YGG   NR +   +I++AV  E+    + +R+S
Sbjct:   17 NRIVMSPMCMYSVENKDGIATDFHFAHYVSRAAGGTGLVILEATAVQEVGRISEFDLGLWNDEQVPALKKLVGGLHYHGAKAGIQLAHAGRKAVLPGEIVAPSAIAFDEKSDKPV------------------ELTKEAIKEVVADFKRAAYRAKEAGFDVIEIHAAHGYLIHQFLSPITNRREDNYGGPAGNRYKILSDIIKAV-KEVWDGPIIVRVS 216          
BLAST of CX043278 vs. ExPASy Swiss-Prot
Match: NAMA_LISMH (NADPH dehydrogenase OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=namA PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.783e-20
Identity = 70/216 (32.41%), Postives = 101/216 (46.76%), Query Frame = 1
Query:    4 HRVVLAPLTRQRSYNN---VPQPHAILYYSQRTTKGGLLIAEATGVSDTAQGYPDTPGIWTKEQVEAWKPIVDAVHAKGGIFFCQIWHVGRVSNQDYQPNGQAPISSTDKPLTPQIRANGVDIAQFTPPRRLRTDEIPQIVNDFRLAARNAIEAGFDGIELHGAHGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLS 642
            +R+V++P+      N        H   Y S+     GL+I EAT V +  +      G+W  EQV A K +VD +H  G     Q+ H GR +    +    + I   +K   P                 L  + I ++V DF+ AA  A EAGFD IE+H AHGYLI QF+    N R D YGG   NR +   +I++AV  E+    + +R+S
Sbjct:   17 NRIVMSPMCMYSVENKDGIATDFHFAHYVSRAAGGTGLVILEATAVQEVGRISEFDLGLWNDEQVPALKRLVDGLHYHGAKAGIQLAHAGRKAVLPGEIVAPSAIPFDEKSAKPV---------------ELTKEAIKEVVADFKRAAYRAKEAGFDVIEIHAAHGYLIHQFLSPITNRREDNYGGPAGNRYKILSDIIKAV-KEVWDGPIIVRVS 216          
BLAST of CX043278 vs. ExPASy Swiss-Prot
Match: NAMA_BACCQ (NADPH dehydrogenase OS=Bacillus cereus (strain Q1) GN=namA PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.634e-20
Identity = 72/234 (30.77%), Postives = 109/234 (46.58%), Query Frame = 1
Query:    4 HRVVLAPLTRQRSYNN---VPQPHAILYYSQRTTKGGLLIAEATGVSDTAQGYPDTPGIWTKEQVEAWKPIVDAVHAKGGIFFCQIWHVGRVSN--QDYQPNGQAPISSTDKPLTPQIRANGVDIAQFTPPRRLRTDEIPQIVNDFRLAARNAIEAGFDGIELHGAHGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYMESGDSNPEAL 690
            +R+V++P+    S N    +   H I Y ++   + GL++ EAT V    +      GIW    +E        +H  G     Q+ H GR +    D       P + T K                  P  +   +I   V  F+ AA  + +AGFD IE+HGAHGYLI++F+    N RTD+YGGS ENR RF  EI+E++ NE+    + +R+S       + D +P+ L
Sbjct:   18 NRIVMSPMCMYSSKNEDGQITNFHLIHYGTRAAGQVGLVMIEATAVLPEGRISNKDLGIWDDSLIEGLHKATTFIHDNGAKAAIQLAHAGRKAELETDALAPSAIPFNETMKM-----------------PIEMSKHQIKDTVLAFQQAAVRSKQAGFDVIEIHGAHGYLINEFLSPLTNKRTDEYGGSPENRYRFLREIIESI-NEVWNGPLFVRIS-------ANDYHPDGL 226          
BLAST of CX043278 vs. ExPASy Swiss-Prot
Match: NAMA_BACC7 (NADPH dehydrogenase OS=Bacillus cereus (strain AH187) GN=namA PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.634e-20
Identity = 72/234 (30.77%), Postives = 109/234 (46.58%), Query Frame = 1
Query:    4 HRVVLAPLTRQRSYNN---VPQPHAILYYSQRTTKGGLLIAEATGVSDTAQGYPDTPGIWTKEQVEAWKPIVDAVHAKGGIFFCQIWHVGRVSN--QDYQPNGQAPISSTDKPLTPQIRANGVDIAQFTPPRRLRTDEIPQIVNDFRLAARNAIEAGFDGIELHGAHGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYMESGDSNPEAL 690
            +R+V++P+    S N    +   H I Y ++   + GL++ EAT V    +      GIW    +E        +H  G     Q+ H GR +    D       P + T K                  P  +   +I   V  F+ AA  + +AGFD IE+HGAHGYLI++F+    N RTD+YGGS ENR RF  EI+E++ NE+    + +R+S       + D +P+ L
Sbjct:   18 NRIVMSPMCMYSSKNEDGQITNFHLIHYGTRAAGQVGLVMIEATAVLPEGRISNKDLGIWDDSLIEGLHKATTFIHDNGAKAAIQLAHAGRKAELETDALAPSAIPFNETMKM-----------------PIEMSKHQIKDTVLAFQQAAVRSKQAGFDVIEIHGAHGYLINEFLSPLTNKRTDEYGGSPENRYRFLREIIESI-NEVWNGPLFVRIS-------ANDYHPDGL 226          
BLAST of CX043278 vs. ExPASy Swiss-Prot
Match: NAMA_LISIN (NADPH dehydrogenase OS=Listeria innocua GN=namA PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.746e-20
Identity = 70/216 (32.41%), Postives = 101/216 (46.76%), Query Frame = 1
Query:    4 HRVVLAPLTRQRSYNN---VPQPHAILYYSQRTTKGGLLIAEATGVSDTAQGYPDTPGIWTKEQVEAWKPIVDAVHAKGGIFFCQIWHVGRVSNQDYQPNGQAPISSTDKPLTPQIRANGVDIAQFTPPRRLRTDEIPQIVNDFRLAARNAIEAGFDGIELHGAHGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLS 642
            +R+V++P+      N        H   Y S+     GL+I EAT V +  +      G+W  EQV A K +VD +H  G     Q+ H GR +    +    + I   +K   P                 L  + I ++V DF+ AA  A EAGFD IE+H AHGYLI QF+    N R D YGG   NR +   +I++AV  E+    + +R+S
Sbjct:   17 NRIVMSPMCMYSVENKDGIATDFHFAHYVSRAAGGTGLVILEATAVQEVGRISEFDLGLWNDEQVPALKRLVDGLHYHGAKAGIQLAHAGRKAVLPGEIVAPSAIPFDEKSAKPV---------------ELTKEAIKEVVADFKRAAYRAKEAGFDVIEIHAAHGYLIHQFLSPISNRREDNYGGPAGNRYKILSDIIKAV-KEVWDGPIIVRVS 216          
The following BLAST results are available for this feature:
BLAST of CX043278 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
NAMA_LISMC2.517e-2132.88NADPH dehydrogenase OS=Listeria monocytogenes sero... [more]
NAMA_LISW67.322e-2132.41NADPH dehydrogenase OS=Listeria welshimeri serovar... [more]
NAMA_GEOKA7.322e-2132.06NADPH dehydrogenase OS=Geobacillus kaustophilus GN... [more]
OYEC_SCHPO1.249e-2031.98Putative NADPH dehydrogenase C23G7.10c OS=Schizosa... [more]
NAMA_BACC21.249e-2031.06NADPH dehydrogenase OS=Bacillus cereus (strain G98... [more]
NAMA_LISMO1.631e-2032.42NADPH dehydrogenase OS=Listeria monocytogenes GN=n... [more]
NAMA_LISMH2.783e-2032.41NADPH dehydrogenase OS=Listeria monocytogenes sero... [more]
NAMA_BACCQ3.634e-2030.77NADPH dehydrogenase OS=Bacillus cereus (strain Q1)... [more]
NAMA_BACC73.634e-2030.77NADPH dehydrogenase OS=Bacillus cereus (strain AH1... [more]
NAMA_LISIN4.746e-2032.41NADPH dehydrogenase OS=Listeria innocua GN=namA PE... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_10A08_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-10A08-B16-1-7.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043278 ID=CX043278; Name=CX043278; organism=Citrus sinensis; type=EST; length=728bp
TCTCATAGAGTTGTTTTGGCACCACTGACTAGACAGAGATCATACAACAA
TGTTCCTCAGCCACATGCCATTTTGTATTACTCTCAAAGAACCACCAAAG
GGGGTTTGCTTATAGCCGAAGCCACTGGAGTTTCCGACACTGCTCAAGGG
TATCCAGATACACCTGGTATCTGGACAAAGGAGCAAGTTGAAGCATGGAA
ACCGATTGTAGATGCTGTTCATGCCAAAGGTGGGATCTTCTTTTGTCAGA
TTTGGCACGTTGGCAGGGTTTCAAATCAAGATTATCAGCCAAATGGTCAA
GCTCCAATTTCCAGTACAGACAAGCCATTGACCCCTCAAATCCGCGCTAA
TGGTGTTGATATTGCACAATTCACTCCTCCAAGGCGGCTAAGGACAGATG
AAATCCCTCAAATTGTGAATGATTTCAGGCTTGCTGCAAGAAACGCAATT
GAGGCTGGTTTTGATGGCATTGAGCTCCACGGTGCACATGGCTACCTAAT
TGACCAATTTATGAAGGATCAAGTGAATGATCGAACAGACCAGTATGGAG
GATCCTTAGAGAATCGTTGCCGTTTTGCTTTAGAAATAGTTGAAGCTGTT
TCCAATGAAATAGGGGCAGATAGGGTTGGGATAAGACTATCTCCGTTTGC
AAACTATATGGAATCAGGAGACTCTAACCCAGAAGCTTTAGGTCTTTACA
TGGCAGAATCCTTGAACAAATATGGTAT
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