CX043277
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB1_ANASP (Tryptophan synthase beta chain 1 OS=Anabaena sp. (strain PCC 7120) GN=trpB1 PE=3 SV=1) HSP 1 Score: 169.474 bits (428), Expect = 1.956e-41 Identity = 80/152 (52.63%), Postives = 103/152 (67.76%), Query Frame = 1 Query: 340 GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795 G+FG+FGGK+VPETL+ L LE + D +Q EL LRDYVGR +PLYFAERLT++Y G G +IYLKREDLNH GAHKINNA+ Q ++AKR+G++ ++A TGAGQHGV ++MG DME+Q+ V MKL+ Sbjct: 18 GRFGKFGGKYVPETLMPALGELETAYQKYRDDASYQTELQNLLRDYVGRPSPLYFAERLTEYYARPDGTGAQIYLKREDLNHTGAHKINNALAQVLLAKRIGKQRVIAETGAGQHGVATATVCARFGLDCVIYMGIHDMERQALNVFRMKLM 169
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_PROM4 (Tryptophan synthase beta chain OS=Prochlorococcus marinus (strain MIT 9211) GN=trpB PE=3 SV=1) HSP 1 Score: 165.622 bits (418), Expect = 2.825e-40 Identity = 84/152 (55.26%), Postives = 106/152 (69.74%), Query Frame = 1 Query: 340 GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795 G+FGRFGG++VPETL+ L+ LE + QD+ F ELS L+ YVGR TPLY A+RL+ HY + +G GP I+LKREDLNH GAHKINNA+GQA++A RMG+K I+A TGAGQHGV ++MG DME+Q+ V MKLL Sbjct: 24 GRFGRFGGQYVPETLMPALAELEKKAAEAWQDSSFTNELSHLLKTYVGRATPLYEAKRLSQHYMSREG-GPRIWLKREDLNHTGAHKINNALGQALLAIRMGKKRIIAETGAGQHGVATATVCARFGLECVIYMGQEDMERQALNVFRMKLL 174
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_SYNSC (Tryptophan synthase beta chain OS=Synechococcus sp. (strain CC9605) GN=trpB PE=3 SV=1) HSP 1 Score: 163.31 bits (412), Expect = 1.402e-39 Identity = 83/152 (54.61%), Postives = 103/152 (67.76%), Query Frame = 1 Query: 340 GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795 G+FGRFGG++VPETL+ L+ LE D F +EL+ L++YVGR TPLY AERLT HYR G GP I+LKREDLNH GAHKINNA+GQA++A RMG+K I+A TGAGQHGV ++MG DM +Q+ V M+LL Sbjct: 26 GRFGRFGGQYVPETLMPALAELEQAAAQAWNDPAFTDELNRLLKNYVGRATPLYEAERLTAHYRRADG-GPRIWLKREDLNHTGAHKINNALGQALLALRMGKKRIIAETGAGQHGVATATVCARFGLECVIYMGAEDMRRQALNVFRMRLL 176
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_SYNPW (Tryptophan synthase beta chain OS=Synechococcus sp. (strain WH7803) GN=trpB PE=3 SV=1) HSP 1 Score: 162.54 bits (410), Expect = 2.391e-39 Identity = 82/152 (53.95%), Postives = 103/152 (67.76%), Query Frame = 1 Query: 340 GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795 G+FGR+GG++VPETL+ L+ LE +D F EL+ L+ YVGR TPLY AERLT+HYR G GP I+LKREDLNH GAHKINNA+GQA++A RMG+K ++A TGAGQHGV V+MG DM +Q+ V M+LL Sbjct: 24 GRFGRYGGQYVPETLMPALAELEQAAAQAWKDPAFTAELNRLLKSYVGRATPLYEAERLTEHYRRADG-GPRIWLKREDLNHTGAHKINNALGQALLALRMGKKRVIAETGAGQHGVATATVCARFGLECVVYMGAEDMRRQALNVFRMRLL 174
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_PROMA (Tryptophan synthase beta chain OS=Prochlorococcus marinus GN=trpB PE=3 SV=1) HSP 1 Score: 162.54 bits (410), Expect = 2.391e-39 Identity = 86/153 (56.21%), Postives = 104/153 (67.97%), Query Frame = 1 Query: 340 GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGE-GPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795 G+FGRFGG++VPETLI L+ LE +D F +EL+ L+ YVGRETPLY A RLT HY E+G GP I+LKREDLNH GAHKINNA+GQA++A RMG+K I+A TGAGQHGV ++MG DM +QS V MKLL Sbjct: 24 GRFGRFGGQYVPETLIPALTELEQAAATAWKDESFTKELTQLLKTYVGRETPLYEATRLTKHY--ERGTVGPRIWLKREDLNHTGAHKINNALGQALLAIRMGKKRIIAETGAGQHGVATATVCARFGLECIIYMGQEDMRRQSLNVFRMKLL 174
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_GLOVI (Tryptophan synthase beta chain OS=Gloeobacter violaceus GN=trpB PE=3 SV=1) HSP 1 Score: 162.54 bits (410), Expect = 2.391e-39 Identity = 83/152 (54.61%), Postives = 104/152 (68.42%), Query Frame = 1 Query: 340 GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795 G+FGRFGG++VPETL++ L+ LEA FN D +F E + LRD+VGR TPLYFAERLT H+ G I+LKREDLNH GAHKINNA+GQA++A RMG++ I+A TGAGQHGV ++MG D+E+Q V MKLL Sbjct: 24 GRFGRFGGQYVPETLMSALAQLEAAFNQYRHDPQFLAEFAGHLRDFVGRPTPLYFAERLTAHWG-----GGRIFLKREDLNHTGAHKINNALGQALLALRMGKRRIIAETGAGQHGVATATVCARFGLECIIYMGVHDIERQKLNVYRMKLL 170
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_SYNPX (Tryptophan synthase beta chain OS=Synechococcus sp. (strain WH8102) GN=trpB PE=3 SV=1) HSP 1 Score: 162.155 bits (409), Expect = 3.123e-39 Identity = 83/152 (54.61%), Postives = 102/152 (67.11%), Query Frame = 1 Query: 340 GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795 G+FGRFGG++VPETL+ L+ LE D F EL+ L++YVGR TPLY AERLT HYR G GP I+LKREDLNH GAHKINNA+GQA++A RMG+K I+A TGAGQHGV ++MG DM +Q+ V M+LL Sbjct: 26 GRFGRFGGQYVPETLMPALAELEQAAAQAWNDPAFTAELNQLLKNYVGRATPLYEAERLTAHYRRADG-GPRIWLKREDLNHTGAHKINNALGQALLALRMGKKRIIAETGAGQHGVATATVCARFGLECVIYMGAEDMRRQALNVFRMRLL 176
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_SYNJB (Tryptophan synthase beta chain OS=Synechococcus sp. GN=trpB PE=3 SV=1) HSP 1 Score: 161.77 bits (408), Expect = 4.079e-39 Identity = 80/152 (52.63%), Postives = 104/152 (68.42%), Query Frame = 1 Query: 340 GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795 G+FG FGG+FVPETL++ L+ LE F +D F+ E LRD+VGR +PLYFA+RLT++Y GP+IYLKREDLNH GAHKINNA+GQ ++A RMG++ I+A TGAGQHGV ++MG DME+Q+ V M+LL Sbjct: 26 GRFGPFGGRFVPETLMSALTELEEAFEHHWRDPDFRAEFHNLLRDFVGRPSPLYFAQRLTEYYG-----GPQIYLKREDLNHTGAHKINNALGQVLLAVRMGKRRIIAETGAGQHGVATATVCARFGLECVIYMGALDMERQAPNVQRMRLL 172
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_PROMT (Tryptophan synthase beta chain OS=Prochlorococcus marinus (strain NATL2A) GN=trpB PE=3 SV=1) HSP 1 Score: 161.77 bits (408), Expect = 4.079e-39 Identity = 80/152 (52.63%), Postives = 102/152 (67.11%), Query Frame = 1 Query: 340 GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795 G+FG++GG++VPETLI L LE +D+ F EL+ L+ YVGR TPLY A RLT+HYR +GP I+LKREDLNH GAHKINNA+GQA++A RMG+K I+A TGAGQHGV ++MG DM +Q+ V M+LL Sbjct: 24 GRFGKYGGQYVPETLIPALIELEQAAKEAWKDSSFNSELNHLLKTYVGRSTPLYEATRLTEHYRKNTLKGPRIWLKREDLNHTGAHKINNALGQALLAIRMGKKRIIAETGAGQHGVATATVCARFGLECIIYMGKEDMRRQALNVFRMQLL 175
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_PROM1 (Tryptophan synthase beta chain OS=Prochlorococcus marinus (strain NATL1A) GN=trpB PE=3 SV=1) HSP 1 Score: 161.77 bits (408), Expect = 4.079e-39 Identity = 80/152 (52.63%), Postives = 102/152 (67.11%), Query Frame = 1 Query: 340 GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795 G+FG++GG++VPETLI L LE +D+ F EL+ L+ YVGR TPLY A RLT+HYR +GP I+LKREDLNH GAHKINNA+GQA++A RMG+K I+A TGAGQHGV ++MG DM +Q+ V M+LL Sbjct: 24 GRFGKYGGQYVPETLIPALIELEQAAKEAWKDSSFNSELNHLLKTYVGRSTPLYEATRLTEHYRKNTLKGPRIWLKREDLNHTGAHKINNALGQALLAIRMGKKRIIAETGAGQHGVATATVCARFGLECIIYMGKEDMRRQALNVFRMQLL 175 The following BLAST results are available for this feature:
BLAST of CX043277 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 425
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Sequences
The
following sequences are available for this feature:
EST sequence >CX043277 ID=CX043277; Name=CX043277; organism=Citrus sinensis; type=EST; length=796bpback to top |