CX043277

Overview
NameCX043277
Unique NameCX043277
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length796
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX043277_ssr33 microsatellite CX043277_ssr33:33..44. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig3563 contig Csv1_Contig3563:1..796. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB1_ANASP (Tryptophan synthase beta chain 1 OS=Anabaena sp. (strain PCC 7120) GN=trpB1 PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.956e-41
Identity = 80/152 (52.63%), Postives = 103/152 (67.76%), Query Frame = 1
Query:  340 GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            G+FG+FGGK+VPETL+  L  LE  +     D  +Q EL   LRDYVGR +PLYFAERLT++Y    G G +IYLKREDLNH GAHKINNA+ Q ++AKR+G++ ++A TGAGQHGV              ++MG  DME+Q+  V  MKL+
Sbjct:   18 GRFGKFGGKYVPETLMPALGELETAYQKYRDDASYQTELQNLLRDYVGRPSPLYFAERLTEYYARPDGTGAQIYLKREDLNHTGAHKINNALAQVLLAKRIGKQRVIAETGAGQHGVATATVCARFGLDCVIYMGIHDMERQALNVFRMKLM 169          
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_PROM4 (Tryptophan synthase beta chain OS=Prochlorococcus marinus (strain MIT 9211) GN=trpB PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.825e-40
Identity = 84/152 (55.26%), Postives = 106/152 (69.74%), Query Frame = 1
Query:  340 GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            G+FGRFGG++VPETL+  L+ LE +     QD+ F  ELS  L+ YVGR TPLY A+RL+ HY + +G GP I+LKREDLNH GAHKINNA+GQA++A RMG+K I+A TGAGQHGV              ++MG  DME+Q+  V  MKLL
Sbjct:   24 GRFGRFGGQYVPETLMPALAELEKKAAEAWQDSSFTNELSHLLKTYVGRATPLYEAKRLSQHYMSREG-GPRIWLKREDLNHTGAHKINNALGQALLAIRMGKKRIIAETGAGQHGVATATVCARFGLECVIYMGQEDMERQALNVFRMKLL 174          
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_SYNSC (Tryptophan synthase beta chain OS=Synechococcus sp. (strain CC9605) GN=trpB PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.402e-39
Identity = 83/152 (54.61%), Postives = 103/152 (67.76%), Query Frame = 1
Query:  340 GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            G+FGRFGG++VPETL+  L+ LE        D  F +EL+  L++YVGR TPLY AERLT HYR   G GP I+LKREDLNH GAHKINNA+GQA++A RMG+K I+A TGAGQHGV              ++MG  DM +Q+  V  M+LL
Sbjct:   26 GRFGRFGGQYVPETLMPALAELEQAAAQAWNDPAFTDELNRLLKNYVGRATPLYEAERLTAHYRRADG-GPRIWLKREDLNHTGAHKINNALGQALLALRMGKKRIIAETGAGQHGVATATVCARFGLECVIYMGAEDMRRQALNVFRMRLL 176          
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_SYNPW (Tryptophan synthase beta chain OS=Synechococcus sp. (strain WH7803) GN=trpB PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 2.391e-39
Identity = 82/152 (53.95%), Postives = 103/152 (67.76%), Query Frame = 1
Query:  340 GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            G+FGR+GG++VPETL+  L+ LE       +D  F  EL+  L+ YVGR TPLY AERLT+HYR   G GP I+LKREDLNH GAHKINNA+GQA++A RMG+K ++A TGAGQHGV              V+MG  DM +Q+  V  M+LL
Sbjct:   24 GRFGRYGGQYVPETLMPALAELEQAAAQAWKDPAFTAELNRLLKSYVGRATPLYEAERLTEHYRRADG-GPRIWLKREDLNHTGAHKINNALGQALLALRMGKKRVIAETGAGQHGVATATVCARFGLECVVYMGAEDMRRQALNVFRMRLL 174          
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_PROMA (Tryptophan synthase beta chain OS=Prochlorococcus marinus GN=trpB PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 2.391e-39
Identity = 86/153 (56.21%), Postives = 104/153 (67.97%), Query Frame = 1
Query:  340 GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGE-GPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            G+FGRFGG++VPETLI  L+ LE       +D  F +EL+  L+ YVGRETPLY A RLT HY  E+G  GP I+LKREDLNH GAHKINNA+GQA++A RMG+K I+A TGAGQHGV              ++MG  DM +QS  V  MKLL
Sbjct:   24 GRFGRFGGQYVPETLIPALTELEQAAATAWKDESFTKELTQLLKTYVGRETPLYEATRLTKHY--ERGTVGPRIWLKREDLNHTGAHKINNALGQALLAIRMGKKRIIAETGAGQHGVATATVCARFGLECIIYMGQEDMRRQSLNVFRMKLL 174          
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_GLOVI (Tryptophan synthase beta chain OS=Gloeobacter violaceus GN=trpB PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 2.391e-39
Identity = 83/152 (54.61%), Postives = 104/152 (68.42%), Query Frame = 1
Query:  340 GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            G+FGRFGG++VPETL++ L+ LEA FN    D +F  E +  LRD+VGR TPLYFAERLT H+      G  I+LKREDLNH GAHKINNA+GQA++A RMG++ I+A TGAGQHGV              ++MG  D+E+Q   V  MKLL
Sbjct:   24 GRFGRFGGQYVPETLMSALAQLEAAFNQYRHDPQFLAEFAGHLRDFVGRPTPLYFAERLTAHWG-----GGRIFLKREDLNHTGAHKINNALGQALLALRMGKRRIIAETGAGQHGVATATVCARFGLECIIYMGVHDIERQKLNVYRMKLL 170          
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_SYNPX (Tryptophan synthase beta chain OS=Synechococcus sp. (strain WH8102) GN=trpB PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 3.123e-39
Identity = 83/152 (54.61%), Postives = 102/152 (67.11%), Query Frame = 1
Query:  340 GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            G+FGRFGG++VPETL+  L+ LE        D  F  EL+  L++YVGR TPLY AERLT HYR   G GP I+LKREDLNH GAHKINNA+GQA++A RMG+K I+A TGAGQHGV              ++MG  DM +Q+  V  M+LL
Sbjct:   26 GRFGRFGGQYVPETLMPALAELEQAAAQAWNDPAFTAELNQLLKNYVGRATPLYEAERLTAHYRRADG-GPRIWLKREDLNHTGAHKINNALGQALLALRMGKKRIIAETGAGQHGVATATVCARFGLECVIYMGAEDMRRQALNVFRMRLL 176          
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_SYNJB (Tryptophan synthase beta chain OS=Synechococcus sp. GN=trpB PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 4.079e-39
Identity = 80/152 (52.63%), Postives = 104/152 (68.42%), Query Frame = 1
Query:  340 GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            G+FG FGG+FVPETL++ L+ LE  F    +D  F+ E    LRD+VGR +PLYFA+RLT++Y      GP+IYLKREDLNH GAHKINNA+GQ ++A RMG++ I+A TGAGQHGV              ++MG  DME+Q+  V  M+LL
Sbjct:   26 GRFGPFGGRFVPETLMSALTELEEAFEHHWRDPDFRAEFHNLLRDFVGRPSPLYFAQRLTEYYG-----GPQIYLKREDLNHTGAHKINNALGQVLLAVRMGKRRIIAETGAGQHGVATATVCARFGLECVIYMGALDMERQAPNVQRMRLL 172          
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_PROMT (Tryptophan synthase beta chain OS=Prochlorococcus marinus (strain NATL2A) GN=trpB PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 4.079e-39
Identity = 80/152 (52.63%), Postives = 102/152 (67.11%), Query Frame = 1
Query:  340 GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            G+FG++GG++VPETLI  L  LE       +D+ F  EL+  L+ YVGR TPLY A RLT+HYR    +GP I+LKREDLNH GAHKINNA+GQA++A RMG+K I+A TGAGQHGV              ++MG  DM +Q+  V  M+LL
Sbjct:   24 GRFGKYGGQYVPETLIPALIELEQAAKEAWKDSSFNSELNHLLKTYVGRSTPLYEATRLTEHYRKNTLKGPRIWLKREDLNHTGAHKINNALGQALLAIRMGKKRIIAETGAGQHGVATATVCARFGLECIIYMGKEDMRRQALNVFRMQLL 175          
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_PROM1 (Tryptophan synthase beta chain OS=Prochlorococcus marinus (strain NATL1A) GN=trpB PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 4.079e-39
Identity = 80/152 (52.63%), Postives = 102/152 (67.11%), Query Frame = 1
Query:  340 GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            G+FG++GG++VPETLI  L  LE       +D+ F  EL+  L+ YVGR TPLY A RLT+HYR    +GP I+LKREDLNH GAHKINNA+GQA++A RMG+K I+A TGAGQHGV              ++MG  DM +Q+  V  M+LL
Sbjct:   24 GRFGKYGGQYVPETLIPALIELEQAAKEAWKDSSFNSELNHLLKTYVGRSTPLYEATRLTEHYRKNTLKGPRIWLKREDLNHTGAHKINNALGQALLAIRMGKKRIIAETGAGQHGVATATVCARFGLECIIYMGKEDMRRQALNVFRMQLL 175          
The following BLAST results are available for this feature:
BLAST of CX043277 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 425
Match NameE-valueIdentityDescription
TRPB1_ANASP1.956e-4152.63Tryptophan synthase beta chain 1 OS=Anabaena sp. (... [more]
TRPB_PROM42.825e-4055.26Tryptophan synthase beta chain OS=Prochlorococcus ... [more]
TRPB_SYNSC1.402e-3954.61Tryptophan synthase beta chain OS=Synechococcus sp... [more]
TRPB_SYNPW2.391e-3953.95Tryptophan synthase beta chain OS=Synechococcus sp... [more]
TRPB_PROMA2.391e-3956.21Tryptophan synthase beta chain OS=Prochlorococcus ... [more]
TRPB_GLOVI2.391e-3954.61Tryptophan synthase beta chain OS=Gloeobacter viol... [more]
TRPB_SYNPX3.123e-3954.61Tryptophan synthase beta chain OS=Synechococcus sp... [more]
TRPB_SYNJB4.079e-3952.63Tryptophan synthase beta chain OS=Synechococcus sp... [more]
TRPB_PROMT4.079e-3952.63Tryptophan synthase beta chain OS=Prochlorococcus ... [more]
TRPB_PROM14.079e-3952.63Tryptophan synthase beta chain OS=Prochlorococcus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_10A07_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-10A07-B14-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043277 ID=CX043277; Name=CX043277; organism=Citrus sinensis; type=EST; length=796bp
AAACAGGATAACATTTTTATGTATATGTATAGGTGTGTGTGTGTTTAAAG
ATATCACAAGCCAAAATCGTCTCTTAATCGCCACACATACTGCATACAGA
GAAGTGTTTTTGCGCCCACTAACATGGATATTGTTTGCAATAACATAAGT
TTTCAGCTTCCTCACAAATTATCTATTACACGAACGCCATTCACATTCAC
AACAACAAAGAGTCGTACGGGGCCGTACTGCTCTTTACAAAAGTACTCGA
CCTCGAGTCCCATTATGAGAAAGCCTTTGATAAACAGCTTATTACCTAAA
ACTGATCATGATCATCGTGAGTACTGGAAACTCAATCCAGGAAAATTTGG
GAGATTTGGAGGAAAGTTTGTGCCTGAGACACTAATCACTTGTTTGAGCC
TACTTGAAGCTGAATTCAACTTTGTTTTGCAGGATACTAAGTTTCAGGAG
GAGCTGTCGACTGCATTAAGAGACTATGTAGGACGGGAGACGCCTCTTTA
TTTTGCTGAGAGGCTGACAGATCATTACAGGAACGAAAAGGGAGAAGGGC
CAGAGATTTATCTGAAAAGAGAAGATCTCAACCATGTGGGTGCACACAAG
ATCAACAACGCCATAGGACAGGCAATGATAGCCAAGCGCATGGGCCGGAA
AAGTATTGTCGCGGCCACCGGTGCTGGACAGCATGGCGTCGCTACAGCTG
CTGCATGCGCAAAACTGGCTTTGGACTGTACTGTGTTCATGGGCACCGCT
GATATGGAGAAACAATCCTCTAAAGTGCTCCTAATGAAGCTACTAG
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