CX043277

Overview
NameCX043277
Unique NameCX043277
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length796
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX043277_ssr33 microsatellite CX043277_ssr33:33..44. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig3563 contig Csv1_Contig3563:1..796. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_STRZP (Tryptophan synthase beta chain OS=Streptococcus pneumoniae (strain P1031) GN=trpB PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 7.693e-38
Identity = 80/152 (52.63%), Postives = 101/152 (66.45%), Query Frame = 1 
Query:  340 GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            G +G+FGG+FVPETL+T +  LE  +     D  FQEEL+  LR YVGRETPLY+A+ LT H       G +IYLKREDLNH GAHKINNA+GQ  +AKRMG+K I+A TGAGQHGV              ++MG  D+++Q+  V  M+LL
Sbjct:   10 GFYGKFGGRFVPETLMTAVLELEKAYRESQADPSFQEELNQLLRQYVGRETPLYYAKNLTQHIG-----GAKIYLKREDLNHTGAHKINNALGQVWLAKRMGKKKIIAETGAGQHGVATATAAALFNMECTIYMGEEDVKRQALNVFRMELL 156
[Close]
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_STRR6 (Tryptophan synthase beta chain OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=trpB PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 7.693e-38
Identity = 80/152 (52.63%), Postives = 101/152 (66.45%), Query Frame = 1 
Query:  340 GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            G +G+FGG+FVPETL+T +  LE  +     D  FQEEL+  LR YVGRETPLY+A+ LT H       G +IYLKREDLNH GAHKINNA+GQ  +AKRMG+K I+A TGAGQHGV              ++MG  D+++Q+  V  M+LL
Sbjct:   10 GFYGKFGGRFVPETLMTAVLELEKAYRESQADPSFQEELNQLLRQYVGRETPLYYAKNLTQHIG-----GAKIYLKREDLNHTGAHKINNALGQVWLAKRMGKKKIIAETGAGQHGVATATAAALFNMECIIYMGEEDVKRQALNVFRMELL 156
[Close]
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_STRPS (Tryptophan synthase beta chain OS=Streptococcus pneumoniae (strain CGSP14) GN=trpB PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 7.693e-38
Identity = 80/152 (52.63%), Postives = 101/152 (66.45%), Query Frame = 1 
Query:  340 GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            G +G+FGG+FVPETL+T +  LE  +     D  FQEEL+  LR YVGRETPLY+A+ LT H       G +IYLKREDLNH GAHKINNA+GQ  +AKRMG+K I+A TGAGQHGV              ++MG  D+++Q+  V  M+LL
Sbjct:   10 GFYGKFGGRFVPETLMTAVLELEKAYRESQADPSFQEELNQLLRQYVGRETPLYYAKNLTQHIG-----GAKIYLKREDLNHTGAHKINNALGQVWLAKRMGKKKIIAETGAGQHGVATATAAALFNMECTIYMGEEDVKRQALNVFRMELL 156
[Close]
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_STRPN (Tryptophan synthase beta chain OS=Streptococcus pneumoniae GN=trpB PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 7.693e-38
Identity = 80/152 (52.63%), Postives = 101/152 (66.45%), Query Frame = 1 
Query:  340 GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            G +G+FGG+FVPETL+T +  LE  +     D  FQEEL+  LR YVGRETPLY+A+ LT H       G +IYLKREDLNH GAHKINNA+GQ  +AKRMG+K I+A TGAGQHGV              ++MG  D+++Q+  V  M+LL
Sbjct:   10 GFYGKFGGRFVPETLMTAVLELEKAYRESQADPSFQEELNQLLRQYVGRETPLYYAKNLTQHIG-----GAKIYLKREDLNHTGAHKINNALGQVWLAKRMGKKKIIAETGAGQHGVATATAAALFNMECTIYMGEEDVKRQALNVFRMELL 156
[Close]
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_STRPJ (Tryptophan synthase beta chain OS=Streptococcus pneumoniae (strain ATCC 700669 / Spain 23F-1) GN=trpB PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 7.693e-38
Identity = 80/152 (52.63%), Postives = 101/152 (66.45%), Query Frame = 1 
Query:  340 GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            G +G+FGG+FVPETL+T +  LE  +     D  FQEEL+  LR YVGRETPLY+A+ LT H       G +IYLKREDLNH GAHKINNA+GQ  +AKRMG+K I+A TGAGQHGV              ++MG  D+++Q+  V  M+LL
Sbjct:   10 GFYGKFGGRFVPETLMTAVLELEKAYRESQADPSFQEELNQLLRQYVGRETPLYYAKNLTQHIG-----GAKIYLKREDLNHTGAHKINNALGQVWLAKRMGKKKIIAETGAGQHGVATATAAALFNMECTIYMGEEDVKRQALNVFRMELL 156
[Close]
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_STRPI (Tryptophan synthase beta chain OS=Streptococcus pneumoniae (strain Hungary19A-6) GN=trpB PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 7.693e-38
Identity = 80/152 (52.63%), Postives = 101/152 (66.45%), Query Frame = 1 
Query:  340 GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            G +G+FGG+FVPETL+T +  LE  +     D  FQEEL+  LR YVGRETPLY+A+ LT H       G +IYLKREDLNH GAHKINNA+GQ  +AKRMG+K I+A TGAGQHGV              ++MG  D+++Q+  V  M+LL
Sbjct:   10 GFYGKFGGRFVPETLMTAVLELEKAYRESQADPSFQEELNQLLRQYVGRETPLYYAKNLTQHIG-----GAKIYLKREDLNHTGAHKINNALGQVWLAKRMGKKKIIAETGAGQHGVATATAAALFNMECTIYMGEEDVKRQALNVFRMELL 156
[Close]
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_STRP7 (Tryptophan synthase beta chain OS=Streptococcus pneumoniae (strain 70585) GN=trpB PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 7.693e-38
Identity = 80/152 (52.63%), Postives = 101/152 (66.45%), Query Frame = 1 
Query:  340 GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            G +G+FGG+FVPETL+T +  LE  +     D  FQEEL+  LR YVGRETPLY+A+ LT H       G +IYLKREDLNH GAHKINNA+GQ  +AKRMG+K I+A TGAGQHGV              ++MG  D+++Q+  V  M+LL
Sbjct:   10 GFYGKFGGRFVPETLMTAVLELEKAYRESQADPSFQEELNQLLRQYVGRETPLYYAKNLTQHIG-----GAKIYLKREDLNHTGAHKINNALGQVWLAKRMGKKKIIAETGAGQHGVATATAAALFNMECTIYMGEEDVKRQALNVFRMELL 156
[Close]
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_STRP4 (Tryptophan synthase beta chain OS=Streptococcus pneumoniae serotype 19F (strain G54) GN=trpB PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 7.693e-38
Identity = 80/152 (52.63%), Postives = 101/152 (66.45%), Query Frame = 1 
Query:  340 GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            G +G+FGG+FVPETL+T +  LE  +     D  FQEEL+  LR YVGRETPLY+A+ LT H       G +IYLKREDLNH GAHKINNA+GQ  +AKRMG+K I+A TGAGQHGV              ++MG  D+++Q+  V  M+LL
Sbjct:   10 GFYGKFGGRFVPETLMTAVLELEKAYRESQADPSFQEELNQLLRQYVGRETPLYYAKNLTQHIG-----GAKIYLKREDLNHTGAHKINNALGQVWLAKRMGKKKIIAETGAGQHGVATATAAALFNMECTIYMGEEDVKRQALNVFRMELL 156
[Close]
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_STRP2 (Tryptophan synthase beta chain OS=Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466) GN=trpB PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 7.693e-38
Identity = 80/152 (52.63%), Postives = 101/152 (66.45%), Query Frame = 1 
Query:  340 GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            G +G+FGG+FVPETL+T +  LE  +     D  FQEEL+  LR YVGRETPLY+A+ LT H       G +IYLKREDLNH GAHKINNA+GQ  +AKRMG+K I+A TGAGQHGV              ++MG  D+++Q+  V  M+LL
Sbjct:   10 GFYGKFGGRFVPETLMTAVLELEKAYRESQADPSFQEELNQLLRQYVGRETPLYYAKNLTQHIG-----GAKIYLKREDLNHTGAHKINNALGQVWLAKRMGKKKIIAETGAGQHGVATATAAALFNMECIIYMGEEDVKRQALNVFRMELL 156
[Close]
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_CLOK5 (Tryptophan synthase beta chain OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) GN=trpB PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 7.693e-38
Identity = 79/154 (51.30%), Postives = 102/154 (66.23%), Query Frame = 1 
Query:  334 NPGKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            N G+FGRFGG++VPET++T L  LE  FN   +D+KF +E    L++Y GR TPLY+AE LT +       G +IYLKREDLNH GAHKINN +GQ ++AKRMG+K ++A TGAGQHGV              ++MG  D  +QS  VL MK+L
Sbjct:    7 NSGRFGRFGGQYVPETVMTALMELEESFNKAKEDSKFIDEYMYYLQEYSGRPTPLYYAENLTKNLG-----GAKIYLKREDLNHTGAHKINNVLGQILLAKRMGKKKVIAETGAGQHGVAVATGAAMFQMECVIYMGEEDCRRQSLNVLRMKIL 155
The following BLAST results are available for this feature:
BLAST of CX043277 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 425
Match NameE-valueIdentityDescription
TRPB_STRZP7.693e-3852.63Tryptophan synthase beta chain OS=Streptococcus pn... [more]
TRPB_STRR67.693e-3852.63Tryptophan synthase beta chain OS=Streptococcus pn... [more]
TRPB_STRPS7.693e-3852.63Tryptophan synthase beta chain OS=Streptococcus pn... [more]
TRPB_STRPN7.693e-3852.63Tryptophan synthase beta chain OS=Streptococcus pn... [more]
TRPB_STRPJ7.693e-3852.63Tryptophan synthase beta chain OS=Streptococcus pn... [more]
TRPB_STRPI7.693e-3852.63Tryptophan synthase beta chain OS=Streptococcus pn... [more]
TRPB_STRP77.693e-3852.63Tryptophan synthase beta chain OS=Streptococcus pn... [more]
TRPB_STRP47.693e-3852.63Tryptophan synthase beta chain OS=Streptococcus pn... [more]
TRPB_STRP27.693e-3852.63Tryptophan synthase beta chain OS=Streptococcus pn... [more]
TRPB_CLOK57.693e-3851.30Tryptophan synthase beta chain OS=Clostridium kluy... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS07_10A07_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-10A07-B14-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043277 ID=CX043277; Name=CX043277; organism=Citrus sinensis; type=EST; length=796bp
AAACAGGATAACATTTTTATGTATATGTATAGGTGTGTGTGTGTTTAAAG
ATATCACAAGCCAAAATCGTCTCTTAATCGCCACACATACTGCATACAGA
GAAGTGTTTTTGCGCCCACTAACATGGATATTGTTTGCAATAACATAAGT
TTTCAGCTTCCTCACAAATTATCTATTACACGAACGCCATTCACATTCAC
AACAACAAAGAGTCGTACGGGGCCGTACTGCTCTTTACAAAAGTACTCGA
CCTCGAGTCCCATTATGAGAAAGCCTTTGATAAACAGCTTATTACCTAAA
ACTGATCATGATCATCGTGAGTACTGGAAACTCAATCCAGGAAAATTTGG
GAGATTTGGAGGAAAGTTTGTGCCTGAGACACTAATCACTTGTTTGAGCC
TACTTGAAGCTGAATTCAACTTTGTTTTGCAGGATACTAAGTTTCAGGAG
GAGCTGTCGACTGCATTAAGAGACTATGTAGGACGGGAGACGCCTCTTTA
TTTTGCTGAGAGGCTGACAGATCATTACAGGAACGAAAAGGGAGAAGGGC
CAGAGATTTATCTGAAAAGAGAAGATCTCAACCATGTGGGTGCACACAAG
ATCAACAACGCCATAGGACAGGCAATGATAGCCAAGCGCATGGGCCGGAA
AAGTATTGTCGCGGCCACCGGTGCTGGACAGCATGGCGTCGCTACAGCTG
CTGCATGCGCAAAACTGGCTTTGGACTGTACTGTGTTCATGGGCACCGCT
GATATGGAGAAACAATCCTCTAAAGTGCTCCTAATGAAGCTACTAG
back to top