CX043277

Overview
NameCX043277
Unique NameCX043277
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length796
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX043277_ssr33 microsatellite CX043277_ssr33:33..44. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig3563 contig Csv1_Contig3563:1..796. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_CLOK1 (Tryptophan synthase beta chain OS=Clostridium kluyveri (strain NBRC 12016) GN=trpB PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 7.693e-38
Identity = 79/154 (51.30%), Postives = 102/154 (66.23%), Query Frame = 1
Query:  334 NPGKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            N G+FGRFGG++VPET++T L  LE  FN   +D+KF +E    L++Y GR TPLY+AE LT +       G +IYLKREDLNH GAHKINN +GQ ++AKRMG+K ++A TGAGQHGV              ++MG  D  +QS  VL MK+L
Sbjct:    7 NSGRFGRFGGQYVPETVMTALMELEESFNKAKEDSKFIDEYMYYLQEYSGRPTPLYYAENLTKNLG-----GAKIYLKREDLNHTGAHKINNVLGQILLAKRMGKKKVIAETGAGQHGVAVATGAAMFQMECVIYMGEEDCRRQSLNVLRMKIL 155          
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_STRT1 (Tryptophan synthase beta chain OS=Streptococcus thermophilus (strain CNRZ 1066) GN=trpB PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 1.005e-37
Identity = 78/152 (51.32%), Postives = 104/152 (68.42%), Query Frame = 1
Query:  340 GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            G +G+FGG+FVPETL+T +  L+  +    +D+ FQ EL   L++YVGRETPLY A+RLTD+       G +IYLKREDLNH GAHKINNA+GQ ++AKRMG+K I+A TGAGQHGV              ++MG  D+++Q+  V  M+LL
Sbjct:   10 GFYGKFGGQFVPETLMTAVIELDKAYREAKEDSSFQAELDDLLKNYVGRETPLYHAKRLTDYIG-----GAQIYLKREDLNHTGAHKINNALGQVLLAKRMGKKKIIAETGAGQHGVATATAAALFDMDCTIYMGEEDVKRQALNVFRMELL 156          
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_LACLS (Tryptophan synthase beta chain OS=Lactococcus lactis subsp. cremoris (strain SK11) GN=trpB PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 1.005e-37
Identity = 78/154 (50.65%), Postives = 103/154 (66.88%), Query Frame = 1
Query:  334 NPGKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            N G +G+FGG+FVPETL+T +  LE  +    +D  FQ EL   L+DYVGRE PLYFA+RLT++       G +IYLKREDLNH GAHKINNA+GQ ++AK+MG+  ++A TGAGQHGV              ++MG  D+++QS  V  M+LL
Sbjct:    8 NQGFYGQFGGQFVPETLMTAVKELEVAYEDSKKDPVFQAELKELLKDYVGRENPLYFAKRLTEY-----AGGAKIYLKREDLNHTGAHKINNALGQVLLAKKMGKNKVIAETGAGQHGVATATAAALFGMECTIYMGEEDVKRQSLNVFRMELL 156          
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_LACLM (Tryptophan synthase beta chain OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=trpB PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 1.005e-37
Identity = 78/154 (50.65%), Postives = 103/154 (66.88%), Query Frame = 1
Query:  334 NPGKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            N G +G+FGG+FVPETL+T +  LE  +    +D  FQ EL   L+DYVGRE PLYFA+RLT++       G +IYLKREDLNH GAHKINNA+GQ ++AK+MG+  ++A TGAGQHGV              ++MG  D+++QS  V  M+LL
Sbjct:    8 NQGFYGQFGGQFVPETLMTAVKELEVAYEDSKKDPVFQAELKELLKDYVGRENPLYFAKRLTEY-----AGGAKIYLKREDLNHTGAHKINNALGQVLLAKKMGKNKVIAETGAGQHGVATATAAALFGMECTIYMGEEDVKRQSLNVFRMELL 156          
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_PROM2 (Tryptophan synthase beta chain OS=Prochlorococcus marinus (strain MIT 9215) GN=trpB PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.312e-37
Identity = 79/152 (51.97%), Postives = 107/152 (70.39%), Query Frame = 1
Query:  340 GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            G+FG++GG++VPETL+  L  LE   +   +D  F +EL+  L+ YVGRETPLY A+RLT++Y+ +K   P+I+LKREDLNH GAHKINNA+GQA++A RMG+K I+A TGAGQHGV              ++MG  D+++QS  V  MKLL
Sbjct:   24 GRFGKYGGQYVPETLMPALFELETAASNAWKDKLFVKELNHLLKTYVGRETPLYEAKRLTEYYKTKKAI-PKIWLKREDLNHTGAHKINNALGQALLAIRMGKKRIIAETGAGQHGVATATVCARFGLKCIIYMGAEDIKRQSLNVFRMKLL 174          
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_OCEIH (Tryptophan synthase beta chain OS=Oceanobacillus iheyensis GN=trpB PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.714e-37
Identity = 79/152 (51.97%), Postives = 99/152 (65.13%), Query Frame = 1
Query:  340 GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            GK+G FGG+FVPE L+  +  LE  +   L+D  F EEL T L +Y+GRETPLY A++LT+H       G +IYLKREDLNH GAHKINN IGQA++  RMG+K +VA TGAGQHGV              VFMG  D+++Q   V  M+LL
Sbjct:   11 GKYGEFGGRFVPELLMPAVLELEKAYEDALKDESFNEELQTYLTEYIGRETPLYHAKKLTEH-----AGGAQIYLKREDLNHTGAHKINNTIGQALLTLRMGKKKVVAETGAGQHGVATATVCSLLGLECIVFMGEEDIKRQKLNVFRMELL 157          
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_STRZJ (Tryptophan synthase beta chain OS=Streptococcus pneumoniae (strain JJA) GN=trpB PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 2.238e-37
Identity = 80/152 (52.63%), Postives = 100/152 (65.79%), Query Frame = 1
Query:  340 GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            G +G+FGG+FVPETL+T +  LE  +     D  FQEEL+  LR YVGRETPLY+A+ LT H       G +IYLKREDLNH GAHKINNA+GQ  +AKRMG+K I+A TGAGQHGV              + MG  D+++Q+  V  M+LL
Sbjct:   10 GFYGKFGGRFVPETLMTAVLELEKAYRESQADPSFQEELNQLLRQYVGRETPLYYAKNLTQHIG-----GAKIYLKREDLNHTGAHKINNALGQVWLAKRMGKKKIIAETGAGQHGVATATAAALFNMECTIHMGEEDVKRQALNVFRMELL 156          
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_THETN (Tryptophan synthase beta chain OS=Thermoanaerobacter tengcongensis GN=trpB PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 3.818e-37
Identity = 79/152 (51.97%), Postives = 101/152 (66.45%), Query Frame = 1
Query:  340 GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            G+FGRFGG++VPET++  L  LE EF    +D KF EE    L++Y GR TPLY+AE LT     ++  G +IYLKREDLNH GAHKINN +GQ ++AKRMG+K I+A TGAGQHGV              +FMG  D+++Q+  V  MKLL
Sbjct:    3 GRFGRFGGQYVPETVMNALIELEREFEEAKKDEKFMEEYRYYLKEYSGRPTPLYYAENLT-----KRLGGAKIYLKREDLNHTGAHKINNVLGQVLLAKRMGKKRIIAETGAGQHGVATATAAAMFGMECEIFMGEEDIKRQALNVFRMKLL 149          
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_THEPX (Tryptophan synthase beta chain OS=Thermoanaerobacter sp. (strain X514) GN=trpB PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 4.986e-37
Identity = 80/152 (52.63%), Postives = 99/152 (65.13%), Query Frame = 1
Query:  340 GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            G+FGRFGG++VPET++  L  LE EF    QD  F EE    LR+Y GR TPLY+AE LT     +K  G +IYLKREDLNH GAHKINN +GQ ++AKRM +K ++A TGAGQHGV              +FMG  D+++QS  V  MKLL
Sbjct:    3 GRFGRFGGQYVPETVMNALIELEREFEKAKQDKDFMEEYRYYLREYSGRPTPLYYAENLT-----KKLGGAKIYLKREDLNHTGAHKINNVLGQILLAKRMNKKRVIAETGAGQHGVATATAAAMFGMECEIFMGEEDIKRQSLNVFRMKLL 149          
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_LISMO (Tryptophan synthase beta chain OS=Listeria monocytogenes GN=trpB PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 4.986e-37
Identity = 78/152 (51.32%), Postives = 103/152 (67.76%), Query Frame = 1
Query:  340 GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            G +G+FGG+FVPETL+  +  L+  +     D  FQ+EL+  L++YVGRETPLYFAE+LT H       G +IYLKREDLNH GAHKINN IGQA++A++MG++ +VA TGAGQHGV              +FMG  D+++QS  V  M+LL
Sbjct:   10 GFYGKFGGRFVPETLMKAVKELDEAYQASKTDPAFQKELNYYLKEYVGRETPLYFAEQLTAH-----AGGAKIYLKREDLNHTGAHKINNTIGQALLARQMGKQKVVAETGAGQHGVATATVAALFNMKCTIFMGEEDVKRQSLNVFRMELL 156          
The following BLAST results are available for this feature:
BLAST of CX043277 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 425
Match NameE-valueIdentityDescription
TRPB_CLOK17.693e-3851.30Tryptophan synthase beta chain OS=Clostridium kluy... [more]
TRPB_STRT11.005e-3751.32Tryptophan synthase beta chain OS=Streptococcus th... [more]
TRPB_LACLS1.005e-3750.65Tryptophan synthase beta chain OS=Lactococcus lact... [more]
TRPB_LACLM1.005e-3750.65Tryptophan synthase beta chain OS=Lactococcus lact... [more]
TRPB_PROM21.312e-3751.97Tryptophan synthase beta chain OS=Prochlorococcus ... [more]
TRPB_OCEIH1.714e-3751.97Tryptophan synthase beta chain OS=Oceanobacillus i... [more]
TRPB_STRZJ2.238e-3752.63Tryptophan synthase beta chain OS=Streptococcus pn... [more]
TRPB_THETN3.818e-3751.97Tryptophan synthase beta chain OS=Thermoanaerobact... [more]
TRPB_THEPX4.986e-3752.63Tryptophan synthase beta chain OS=Thermoanaerobact... [more]
TRPB_LISMO4.986e-3751.32Tryptophan synthase beta chain OS=Listeria monocyt... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_10A07_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-10A07-B14-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043277 ID=CX043277; Name=CX043277; organism=Citrus sinensis; type=EST; length=796bp
AAACAGGATAACATTTTTATGTATATGTATAGGTGTGTGTGTGTTTAAAG
ATATCACAAGCCAAAATCGTCTCTTAATCGCCACACATACTGCATACAGA
GAAGTGTTTTTGCGCCCACTAACATGGATATTGTTTGCAATAACATAAGT
TTTCAGCTTCCTCACAAATTATCTATTACACGAACGCCATTCACATTCAC
AACAACAAAGAGTCGTACGGGGCCGTACTGCTCTTTACAAAAGTACTCGA
CCTCGAGTCCCATTATGAGAAAGCCTTTGATAAACAGCTTATTACCTAAA
ACTGATCATGATCATCGTGAGTACTGGAAACTCAATCCAGGAAAATTTGG
GAGATTTGGAGGAAAGTTTGTGCCTGAGACACTAATCACTTGTTTGAGCC
TACTTGAAGCTGAATTCAACTTTGTTTTGCAGGATACTAAGTTTCAGGAG
GAGCTGTCGACTGCATTAAGAGACTATGTAGGACGGGAGACGCCTCTTTA
TTTTGCTGAGAGGCTGACAGATCATTACAGGAACGAAAAGGGAGAAGGGC
CAGAGATTTATCTGAAAAGAGAAGATCTCAACCATGTGGGTGCACACAAG
ATCAACAACGCCATAGGACAGGCAATGATAGCCAAGCGCATGGGCCGGAA
AAGTATTGTCGCGGCCACCGGTGCTGGACAGCATGGCGTCGCTACAGCTG
CTGCATGCGCAAAACTGGCTTTGGACTGTACTGTGTTCATGGGCACCGCT
GATATGGAGAAACAATCCTCTAAAGTGCTCCTAATGAAGCTACTAG
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