CX043277

Overview
NameCX043277
Unique NameCX043277
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length796
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX043277_ssr33 microsatellite CX043277_ssr33:33..44. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig3563 contig Csv1_Contig3563:1..796. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_LISMH (Tryptophan synthase beta chain OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=trpB PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 4.986e-37
Identity = 78/152 (51.32%), Postives = 103/152 (67.76%), Query Frame = 1
Query:  340 GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            G +G+FGG+FVPETL+  +  L+  +     D  FQ+EL+  L++YVGRETPLYFAE+LT H       G +IYLKREDLNH GAHKINN IGQA++A++MG++ +VA TGAGQHGV              +FMG  D+++QS  V  M+LL
Sbjct:   10 GFYGKFGGRFVPETLMKAVKELDEAYRASKTDPAFQKELNYYLKEYVGRETPLYFAEQLTAH-----AGGAKIYLKREDLNHTGAHKINNTIGQALLARQMGKQKVVAETGAGQHGVATATVAALFNMECTIFMGEEDVKRQSLNVFRMELL 156          
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_LISMF (Tryptophan synthase beta chain OS=Listeria monocytogenes serotype 4b (strain F2365) GN=trpB PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 4.986e-37
Identity = 78/152 (51.32%), Postives = 103/152 (67.76%), Query Frame = 1
Query:  340 GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            G +G+FGG+FVPETL+  +  L+  +     D  FQ+EL+  L++YVGRETPLYFAE+LT H       G +IYLKREDLNH GAHKINN IGQA++A++MG++ +VA TGAGQHGV              +FMG  D+++QS  V  M+LL
Sbjct:   10 GFYGKFGGRFVPETLMKAVKELDEAYRASKTDPAFQKELNYYLKEYVGRETPLYFAEQLTAH-----AGGAKIYLKREDLNHTGAHKINNTIGQALLARQMGKQKVVAETGAGQHGVATATVAALFNMECTIFMGEEDVKRQSLNVFRMELL 156          
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_LISMC (Tryptophan synthase beta chain OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=trpB PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 4.986e-37
Identity = 78/152 (51.32%), Postives = 103/152 (67.76%), Query Frame = 1
Query:  340 GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            G +G+FGG+FVPETL+  +  L+  +     D  FQ+EL+  L++YVGRETPLYFAE+LT H       G +IYLKREDLNH GAHKINN IGQA++A++MG++ +VA TGAGQHGV              +FMG  D+++QS  V  M+LL
Sbjct:   10 GFYGKFGGRFVPETLMKAVKELDEAYRASKTDPAFQKELNYYLKEYVGRETPLYFAEQLTAH-----AGGAKIYLKREDLNHTGAHKINNTIGQALLARQMGKQKVVAETGAGQHGVATATVAALFNMECTIFMGEEDVKRQSLNVFRMELL 156          
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_LACLA (Tryptophan synthase beta chain OS=Lactococcus lactis subsp. lactis GN=trpB PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 4.986e-37
Identity = 77/154 (50.00%), Postives = 103/154 (66.88%), Query Frame = 1
Query:  334 NPGKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            N G +G+FGG+FVPETL+T +  LE  +    +D  FQ EL   L+DYVGRE PLY+A+RLT++       G +IYLKREDLNH GAHKINNA+GQ ++AK+MG+  ++A TGAGQHGV              ++MG  D+++QS  V  M+LL
Sbjct:    8 NKGFYGQFGGQFVPETLMTAVKQLEEAYVDSKKDPLFQAELKELLKDYVGRENPLYYAKRLTEY-----AGGAKIYLKREDLNHTGAHKINNALGQVLLAKKMGKNKVIAETGAGQHGVASATAAALFGMECTIYMGEEDVKRQSLNVFRMELL 156          
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_PSEAE (Tryptophan synthase beta chain OS=Pseudomonas aeruginosa GN=trpB PE=3 SV=2)

HSP 1 Score: 154.451 bits (389), Expect = 6.512e-37
Identity = 79/152 (51.97%), Postives = 100/152 (65.79%), Query Frame = 1
Query:  340 GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            G FGRFGG++V ETL+  +  L  E+     D  FQEEL+   RDYVGR +PLYFAERLT+H       G +IYLKRE+LNH GAHKINN IGQ ++A+RMG+K I+A TGAG HGV              ++MGT D+++Q + V  MKLL
Sbjct:   12 GLFGRFGGQYVAETLMPLILDLAREYEKAKDDPAFQEELAYFQRDYVGRPSPLYFAERLTEHCG-----GAKIYLKREELNHTGAHKINNCIGQILLARRMGKKRIIAETGAGMHGVATATVAARFGLQCVIYMGTTDIDRQQANVFRMKLL 158          
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_PROM9 (Tryptophan synthase beta chain OS=Prochlorococcus marinus (strain MIT 9312) GN=trpB PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 6.512e-37
Identity = 79/152 (51.97%), Postives = 104/152 (68.42%), Query Frame = 1
Query:  340 GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            G+FG++GG++VPETL+  L  LE   +   +D  F +EL+  L+ YVGRETPLY A+RLT+HY+  K     I+LKREDLNH GAHKINNA+GQA++A RMG+K I+A TGAGQHGV              ++MG  D+++QS  V  MKLL
Sbjct:   24 GRFGKYGGQYVPETLMPALFELETAASNAWKDKLFVKELNHLLKTYVGRETPLYEAKRLTEHYKT-KHATTRIWLKREDLNHTGAHKINNALGQALLAIRMGKKRIIAETGAGQHGVATATVCARFGMKCIIYMGAEDIKRQSLNVFRMKLL 174          
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_LISW6 (Tryptophan synthase beta chain OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=trpB PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 8.505e-37
Identity = 78/152 (51.32%), Postives = 103/152 (67.76%), Query Frame = 1
Query:  340 GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            G +G+FGG+FVPETL+  +  L+  +     D+ FQ+EL+  L++YVGRETPLYFAE+LT H       G +IYLKREDLNH GAHKINN IGQA++A++MG+  +VA TGAGQHGV              +FMG  D+++QS  V  M+LL
Sbjct:   10 GFYGKFGGRFVPETLMKAVIELDEAYRASKTDSAFQKELNYYLKEYVGRETPLYFAEQLTAH-----AGGAKIYLKREDLNHTGAHKINNTIGQALLARQMGKHKVVAETGAGQHGVATATVAALFNMECTIFMGEEDVKRQSLNVFRMELL 156          
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_PROMP (Tryptophan synthase beta chain OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=trpB PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.451e-36
Identity = 78/152 (51.32%), Postives = 104/152 (68.42%), Query Frame = 1
Query:  340 GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            G+FG++GG++VPETL+  L  LE   +   +D +F  EL+  L+ YVGRETPLY A+RLT+HY+  K     I+LKREDLNH GAHKINNA+GQA++A RMG++ I+A TGAGQHGV              ++MG  D+++QS  V  MKLL
Sbjct:   23 GRFGKYGGQYVPETLMPALFELEEAASDAWKDKQFVNELNHLLKTYVGRETPLYEAKRLTEHYQT-KTSTSRIWLKREDLNHTGAHKINNALGQALLAIRMGKQRIIAETGAGQHGVATATVCARFGLQCIIYMGAEDIKRQSLNVFRMKLL 173          
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_LISIN (Tryptophan synthase beta chain OS=Listeria innocua GN=trpB PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.895e-36
Identity = 77/152 (50.66%), Postives = 103/152 (67.76%), Query Frame = 1
Query:  340 GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            G +G+FGG+FVPETL+  +  L+  +     D  FQ+EL+  L++YVGRETPLYFAE+LT +       G +IYLKREDLNH GAHKINN IGQA++A++MG++ +VA TGAGQHGV              +FMG  D+++QS  V  M+LL
Sbjct:   10 GFYGKFGGRFVPETLMKAVKELDEAYRASKTDAAFQKELNYYLKEYVGRETPLYFAEQLTAY-----AGGAKIYLKREDLNHTGAHKINNTIGQALLARQMGKQKVVAETGAGQHGVATATVAALFNMECTIFMGEEDVKRQSLNVFRMELL 156          
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB1_AQUAE (Tryptophan synthase beta chain 1 OS=Aquifex aeolicus GN=trpB1 PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.895e-36
Identity = 80/152 (52.63%), Postives = 98/152 (64.47%), Query Frame = 1
Query:  340 GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            G FG FGGKFVPETL+  L  LE ++  +  D +FQ+EL   LR+Y GR TPLYFAE+LT +       G +IYLKREDL H GAHKINN IGQ ++ KRMG+K ++A TGAGQHGV              V+MG  D E+Q+  V  MKLL
Sbjct:    9 GYFGPFGGKFVPETLMYALEELEEKYRELKSDPEFQKELDYYLREYAGRPTPLYFAEKLTKYVG-----GAKIYLKREDLLHTGAHKINNTIGQCLLTKRMGKKRVIAETGAGQHGVATATASALFGLECVVYMGEEDAERQALNVFRMKLL 155          
The following BLAST results are available for this feature:
BLAST of CX043277 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 425
Match NameE-valueIdentityDescription
TRPB_LISMH4.986e-3751.32Tryptophan synthase beta chain OS=Listeria monocyt... [more]
TRPB_LISMF4.986e-3751.32Tryptophan synthase beta chain OS=Listeria monocyt... [more]
TRPB_LISMC4.986e-3751.32Tryptophan synthase beta chain OS=Listeria monocyt... [more]
TRPB_LACLA4.986e-3750.00Tryptophan synthase beta chain OS=Lactococcus lact... [more]
TRPB_PSEAE6.512e-3751.97Tryptophan synthase beta chain OS=Pseudomonas aeru... [more]
TRPB_PROM96.512e-3751.97Tryptophan synthase beta chain OS=Prochlorococcus ... [more]
TRPB_LISW68.505e-3751.32Tryptophan synthase beta chain OS=Listeria welshim... [more]
TRPB_PROMP1.451e-3651.32Tryptophan synthase beta chain OS=Prochlorococcus ... [more]
TRPB_LISIN1.895e-3650.66Tryptophan synthase beta chain OS=Listeria innocua... [more]
TRPB1_AQUAE1.895e-3652.63Tryptophan synthase beta chain 1 OS=Aquifex aeolic... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_10A07_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-10A07-B14-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043277 ID=CX043277; Name=CX043277; organism=Citrus sinensis; type=EST; length=796bp
AAACAGGATAACATTTTTATGTATATGTATAGGTGTGTGTGTGTTTAAAG
ATATCACAAGCCAAAATCGTCTCTTAATCGCCACACATACTGCATACAGA
GAAGTGTTTTTGCGCCCACTAACATGGATATTGTTTGCAATAACATAAGT
TTTCAGCTTCCTCACAAATTATCTATTACACGAACGCCATTCACATTCAC
AACAACAAAGAGTCGTACGGGGCCGTACTGCTCTTTACAAAAGTACTCGA
CCTCGAGTCCCATTATGAGAAAGCCTTTGATAAACAGCTTATTACCTAAA
ACTGATCATGATCATCGTGAGTACTGGAAACTCAATCCAGGAAAATTTGG
GAGATTTGGAGGAAAGTTTGTGCCTGAGACACTAATCACTTGTTTGAGCC
TACTTGAAGCTGAATTCAACTTTGTTTTGCAGGATACTAAGTTTCAGGAG
GAGCTGTCGACTGCATTAAGAGACTATGTAGGACGGGAGACGCCTCTTTA
TTTTGCTGAGAGGCTGACAGATCATTACAGGAACGAAAAGGGAGAAGGGC
CAGAGATTTATCTGAAAAGAGAAGATCTCAACCATGTGGGTGCACACAAG
ATCAACAACGCCATAGGACAGGCAATGATAGCCAAGCGCATGGGCCGGAA
AAGTATTGTCGCGGCCACCGGTGCTGGACAGCATGGCGTCGCTACAGCTG
CTGCATGCGCAAAACTGGCTTTGGACTGTACTGTGTTCATGGGCACCGCT
GATATGGAGAAACAATCCTCTAAAGTGCTCCTAATGAAGCTACTAG
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