CX043277
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_LISMH (Tryptophan synthase beta chain OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=trpB PE=3 SV=1) HSP 1 Score: 154.836 bits (390), Expect = 4.986e-37 Identity = 78/152 (51.32%), Postives = 103/152 (67.76%), Query Frame = 1 Query: 340 GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795 G +G+FGG+FVPETL+ + L+ + D FQ+EL+ L++YVGRETPLYFAE+LT H G +IYLKREDLNH GAHKINN IGQA++A++MG++ +VA TGAGQHGV +FMG D+++QS V M+LL Sbjct: 10 GFYGKFGGRFVPETLMKAVKELDEAYRASKTDPAFQKELNYYLKEYVGRETPLYFAEQLTAH-----AGGAKIYLKREDLNHTGAHKINNTIGQALLARQMGKQKVVAETGAGQHGVATATVAALFNMECTIFMGEEDVKRQSLNVFRMELL 156
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_LISMF (Tryptophan synthase beta chain OS=Listeria monocytogenes serotype 4b (strain F2365) GN=trpB PE=3 SV=1) HSP 1 Score: 154.836 bits (390), Expect = 4.986e-37 Identity = 78/152 (51.32%), Postives = 103/152 (67.76%), Query Frame = 1 Query: 340 GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795 G +G+FGG+FVPETL+ + L+ + D FQ+EL+ L++YVGRETPLYFAE+LT H G +IYLKREDLNH GAHKINN IGQA++A++MG++ +VA TGAGQHGV +FMG D+++QS V M+LL Sbjct: 10 GFYGKFGGRFVPETLMKAVKELDEAYRASKTDPAFQKELNYYLKEYVGRETPLYFAEQLTAH-----AGGAKIYLKREDLNHTGAHKINNTIGQALLARQMGKQKVVAETGAGQHGVATATVAALFNMECTIFMGEEDVKRQSLNVFRMELL 156
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_LISMC (Tryptophan synthase beta chain OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=trpB PE=3 SV=1) HSP 1 Score: 154.836 bits (390), Expect = 4.986e-37 Identity = 78/152 (51.32%), Postives = 103/152 (67.76%), Query Frame = 1 Query: 340 GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795 G +G+FGG+FVPETL+ + L+ + D FQ+EL+ L++YVGRETPLYFAE+LT H G +IYLKREDLNH GAHKINN IGQA++A++MG++ +VA TGAGQHGV +FMG D+++QS V M+LL Sbjct: 10 GFYGKFGGRFVPETLMKAVKELDEAYRASKTDPAFQKELNYYLKEYVGRETPLYFAEQLTAH-----AGGAKIYLKREDLNHTGAHKINNTIGQALLARQMGKQKVVAETGAGQHGVATATVAALFNMECTIFMGEEDVKRQSLNVFRMELL 156
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_LACLA (Tryptophan synthase beta chain OS=Lactococcus lactis subsp. lactis GN=trpB PE=3 SV=1) HSP 1 Score: 154.836 bits (390), Expect = 4.986e-37 Identity = 77/154 (50.00%), Postives = 103/154 (66.88%), Query Frame = 1 Query: 334 NPGKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795 N G +G+FGG+FVPETL+T + LE + +D FQ EL L+DYVGRE PLY+A+RLT++ G +IYLKREDLNH GAHKINNA+GQ ++AK+MG+ ++A TGAGQHGV ++MG D+++QS V M+LL Sbjct: 8 NKGFYGQFGGQFVPETLMTAVKQLEEAYVDSKKDPLFQAELKELLKDYVGRENPLYYAKRLTEY-----AGGAKIYLKREDLNHTGAHKINNALGQVLLAKKMGKNKVIAETGAGQHGVASATAAALFGMECTIYMGEEDVKRQSLNVFRMELL 156
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_PSEAE (Tryptophan synthase beta chain OS=Pseudomonas aeruginosa GN=trpB PE=3 SV=2) HSP 1 Score: 154.451 bits (389), Expect = 6.512e-37 Identity = 79/152 (51.97%), Postives = 100/152 (65.79%), Query Frame = 1 Query: 340 GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795 G FGRFGG++V ETL+ + L E+ D FQEEL+ RDYVGR +PLYFAERLT+H G +IYLKRE+LNH GAHKINN IGQ ++A+RMG+K I+A TGAG HGV ++MGT D+++Q + V MKLL Sbjct: 12 GLFGRFGGQYVAETLMPLILDLAREYEKAKDDPAFQEELAYFQRDYVGRPSPLYFAERLTEHCG-----GAKIYLKREELNHTGAHKINNCIGQILLARRMGKKRIIAETGAGMHGVATATVAARFGLQCVIYMGTTDIDRQQANVFRMKLL 158
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_PROM9 (Tryptophan synthase beta chain OS=Prochlorococcus marinus (strain MIT 9312) GN=trpB PE=3 SV=1) HSP 1 Score: 154.451 bits (389), Expect = 6.512e-37 Identity = 79/152 (51.97%), Postives = 104/152 (68.42%), Query Frame = 1 Query: 340 GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795 G+FG++GG++VPETL+ L LE + +D F +EL+ L+ YVGRETPLY A+RLT+HY+ K I+LKREDLNH GAHKINNA+GQA++A RMG+K I+A TGAGQHGV ++MG D+++QS V MKLL Sbjct: 24 GRFGKYGGQYVPETLMPALFELETAASNAWKDKLFVKELNHLLKTYVGRETPLYEAKRLTEHYKT-KHATTRIWLKREDLNHTGAHKINNALGQALLAIRMGKKRIIAETGAGQHGVATATVCARFGMKCIIYMGAEDIKRQSLNVFRMKLL 174
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_LISW6 (Tryptophan synthase beta chain OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=trpB PE=3 SV=1) HSP 1 Score: 154.066 bits (388), Expect = 8.505e-37 Identity = 78/152 (51.32%), Postives = 103/152 (67.76%), Query Frame = 1 Query: 340 GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795 G +G+FGG+FVPETL+ + L+ + D+ FQ+EL+ L++YVGRETPLYFAE+LT H G +IYLKREDLNH GAHKINN IGQA++A++MG+ +VA TGAGQHGV +FMG D+++QS V M+LL Sbjct: 10 GFYGKFGGRFVPETLMKAVIELDEAYRASKTDSAFQKELNYYLKEYVGRETPLYFAEQLTAH-----AGGAKIYLKREDLNHTGAHKINNTIGQALLARQMGKHKVVAETGAGQHGVATATVAALFNMECTIFMGEEDVKRQSLNVFRMELL 156
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_PROMP (Tryptophan synthase beta chain OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=trpB PE=3 SV=1) HSP 1 Score: 153.295 bits (386), Expect = 1.451e-36 Identity = 78/152 (51.32%), Postives = 104/152 (68.42%), Query Frame = 1 Query: 340 GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795 G+FG++GG++VPETL+ L LE + +D +F EL+ L+ YVGRETPLY A+RLT+HY+ K I+LKREDLNH GAHKINNA+GQA++A RMG++ I+A TGAGQHGV ++MG D+++QS V MKLL Sbjct: 23 GRFGKYGGQYVPETLMPALFELEEAASDAWKDKQFVNELNHLLKTYVGRETPLYEAKRLTEHYQT-KTSTSRIWLKREDLNHTGAHKINNALGQALLAIRMGKQRIIAETGAGQHGVATATVCARFGLQCIIYMGAEDIKRQSLNVFRMKLL 173
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_LISIN (Tryptophan synthase beta chain OS=Listeria innocua GN=trpB PE=3 SV=1) HSP 1 Score: 152.91 bits (385), Expect = 1.895e-36 Identity = 77/152 (50.66%), Postives = 103/152 (67.76%), Query Frame = 1 Query: 340 GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795 G +G+FGG+FVPETL+ + L+ + D FQ+EL+ L++YVGRETPLYFAE+LT + G +IYLKREDLNH GAHKINN IGQA++A++MG++ +VA TGAGQHGV +FMG D+++QS V M+LL Sbjct: 10 GFYGKFGGRFVPETLMKAVKELDEAYRASKTDAAFQKELNYYLKEYVGRETPLYFAEQLTAY-----AGGAKIYLKREDLNHTGAHKINNTIGQALLARQMGKQKVVAETGAGQHGVATATVAALFNMECTIFMGEEDVKRQSLNVFRMELL 156
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB1_AQUAE (Tryptophan synthase beta chain 1 OS=Aquifex aeolicus GN=trpB1 PE=3 SV=1) HSP 1 Score: 152.91 bits (385), Expect = 1.895e-36 Identity = 80/152 (52.63%), Postives = 98/152 (64.47%), Query Frame = 1 Query: 340 GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795 G FG FGGKFVPETL+ L LE ++ + D +FQ+EL LR+Y GR TPLYFAE+LT + G +IYLKREDL H GAHKINN IGQ ++ KRMG+K ++A TGAGQHGV V+MG D E+Q+ V MKLL Sbjct: 9 GYFGPFGGKFVPETLMYALEELEEKYRELKSDPEFQKELDYYLREYAGRPTPLYFAEKLTKYVG-----GAKIYLKREDLLHTGAHKINNTIGQCLLTKRMGKKRVIAETGAGQHGVATATASALFGLECVVYMGEEDAERQALNVFRMKLL 155 The following BLAST results are available for this feature:
BLAST of CX043277 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 425
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Sequences
The
following sequences are available for this feature:
EST sequence >CX043277 ID=CX043277; Name=CX043277; organism=Citrus sinensis; type=EST; length=796bpback to top |