CX043277

Overview
NameCX043277
Unique NameCX043277
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length796
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX043277_ssr33 microsatellite CX043277_ssr33:33..44. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig3563 contig Csv1_Contig3563:1..796. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_BACCZ (Tryptophan synthase beta chain OS=Bacillus cereus (strain ZK / E33L) GN=trpB PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.228e-35
Identity = 76/152 (50.00%), Postives = 100/152 (65.79%), Query Frame = 1 
Query:  340 GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            G +G +GG++VPETL+  +  LE  +   ++D  FQ+EL+  L+ YVGRETPLYFAE +T++       G +IYLKREDLNH GAHKINN IGQA++A RMG+K +VA TGAGQHGV              +FMG  D+ +Q   V  M+LL
Sbjct:   10 GHYGIYGGRYVPETLMQSVLELEEAYKEAMEDEAFQKELNHYLKTYVGRETPLYFAENMTEYCG-----GAKIYLKREDLNHTGAHKINNTIGQALLAVRMGKKKVVAETGAGQHGVATATVCALLGLECVIFMGEEDVRRQKLNVFRMELL 156
[Close]
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_BACC2 (Tryptophan synthase beta chain OS=Bacillus cereus (strain G9842) GN=trpB PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.228e-35
Identity = 77/152 (50.66%), Postives = 99/152 (65.13%), Query Frame = 1 
Query:  340 GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            G +G +GG++VPETL+  +  LE  +   +QD  FQ+EL+  L+ YVGRETPLYFAE +T +       G +IYLKREDLNH GAHKINN IGQA++A RMG+K +VA TGAGQHGV              +FMG  D+ +Q   V  M+LL
Sbjct:   10 GHYGIYGGRYVPETLMQSVLELEEAYKEAMQDEAFQKELNHYLKTYVGRETPLYFAENMTKYCG-----GAKIYLKREDLNHTGAHKINNTIGQALLAVRMGKKKVVAETGAGQHGVATATVCALLGLECVIFMGEEDVRRQKLNVFRMELL 156
[Close]
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_BACAN (Tryptophan synthase beta chain OS=Bacillus anthracis GN=trpB PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.228e-35
Identity = 76/152 (50.00%), Postives = 100/152 (65.79%), Query Frame = 1 
Query:  340 GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            G +G +GG++VPETL+  +  LE  +   ++D  FQ+EL+  L+ YVGRETPLYFAE +T++       G +IYLKREDLNH GAHKINN IGQA++A RMG+K +VA TGAGQHGV              +FMG  D+ +Q   V  M+LL
Sbjct:   10 GHYGIYGGRYVPETLMQSVLELEEAYKEAMEDEAFQKELNHYLKTYVGRETPLYFAENMTEYCG-----GAKIYLKREDLNHTGAHKINNTIGQALLAVRMGKKKVVAETGAGQHGVATATVCALLGLECVIFMGEEDVRRQKLNVFRMELL 156
[Close]
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_BACAC (Tryptophan synthase beta chain OS=Bacillus anthracis (strain CDC 684 / NRRL 3495) GN=trpB PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.228e-35
Identity = 76/152 (50.00%), Postives = 100/152 (65.79%), Query Frame = 1 
Query:  340 GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            G +G +GG++VPETL+  +  LE  +   ++D  FQ+EL+  L+ YVGRETPLYFAE +T++       G +IYLKREDLNH GAHKINN IGQA++A RMG+K +VA TGAGQHGV              +FMG  D+ +Q   V  M+LL
Sbjct:   10 GHYGIYGGRYVPETLMQSVLELEEAYKEAMEDEAFQKELNHYLKTYVGRETPLYFAENMTEYCG-----GAKIYLKREDLNHTGAHKINNTIGQALLAVRMGKKKVVAETGAGQHGVATATVCALLGLECVIFMGEEDVRRQKLNVFRMELL 156
[Close]
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_BACAA (Tryptophan synthase beta chain OS=Bacillus anthracis (strain A0248) GN=trpB PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.228e-35
Identity = 76/152 (50.00%), Postives = 100/152 (65.79%), Query Frame = 1 
Query:  340 GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            G +G +GG++VPETL+  +  LE  +   ++D  FQ+EL+  L+ YVGRETPLYFAE +T++       G +IYLKREDLNH GAHKINN IGQA++A RMG+K +VA TGAGQHGV              +FMG  D+ +Q   V  M+LL
Sbjct:   10 GHYGIYGGRYVPETLMQSVLELEEAYKEAMEDEAFQKELNHYLKTYVGRETPLYFAENMTEYCG-----GAKIYLKREDLNHTGAHKINNTIGQALLAVRMGKKKVVAETGAGQHGVATATVCALLGLECVIFMGEEDVRRQKLNVFRMELL 156
[Close]
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_PSEPF (Tryptophan synthase beta chain OS=Pseudomonas fluorescens (strain Pf0-1) GN=trpB PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.604e-35
Identity = 77/152 (50.66%), Postives = 99/152 (65.13%), Query Frame = 1 
Query:  340 GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            G FG FGG++V ETL+  +  L  E+    +D  F+EEL+   RDYVGR +PLYFAERLT+        G +IYLKRE+LNH GAHKINN IGQ ++A+RMG+K I+A TGAG HGV              ++MGT D+E+Q + V  MKLL
Sbjct:   18 GLFGSFGGRYVAETLMPLILDLAREYEAAKEDPAFKEELAYFQRDYVGRPSPLYFAERLTEFCG-----GAKIYLKREELNHTGAHKINNCIGQILLARRMGKKRIIAETGAGMHGVATATVAARFGLDCVIYMGTTDIERQQANVFRMKLL 164
[Close]
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_BACWK (Tryptophan synthase beta chain OS=Bacillus weihenstephanensis (strain KBAB4) GN=trpB PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.604e-35
Identity = 77/152 (50.66%), Postives = 99/152 (65.13%), Query Frame = 1 
Query:  340 GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            G +G +GG++VPETL+  +  LE  +   +QD  FQ+EL+  L+ YVGRETPLYFAE +T +       G +IYLKREDLNH GAHKINN IGQA++A RMG+K +VA TGAGQHGV              +FMG  D+ +Q   V  M+LL
Sbjct:   10 GHYGIYGGRYVPETLMQSVLELEEAYKEAMQDEAFQKELNHYLQTYVGRETPLYFAENMTKYCG-----GAKIYLKREDLNHTGAHKINNTIGQALLAVRMGKKKVVAETGAGQHGVATATVCALFGLECVIFMGEEDVRRQKLNVFRMELL 156
[Close]
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_BACCQ (Tryptophan synthase beta chain OS=Bacillus cereus (strain Q1) GN=trpB PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.604e-35
Identity = 76/152 (50.00%), Postives = 100/152 (65.79%), Query Frame = 1 
Query:  340 GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            G +G +GG++VPETL+  +  LE  +   ++D +FQ+EL+  L+ YVGRETPLYFAE +T +       G +IYLKREDLNH GAHKINN IGQA++A RMG+K +VA TGAGQHGV              +FMG  D+ +Q   V  M+LL
Sbjct:   10 GHYGIYGGRYVPETLMQSVLELEEAYKEAMEDEEFQKELNHYLKTYVGRETPLYFAENMTKYCG-----GAKIYLKREDLNHTGAHKINNTIGQALLAVRMGKKKVVAETGAGQHGVATATVCALLGLECVIFMGEEDVRRQKLNVFRMELL 156
[Close]
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_DEIRA (Tryptophan synthase beta chain OS=Deinococcus radiodurans GN=trpB PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 2.095e-35
Identity = 77/152 (50.66%), Postives = 97/152 (63.82%), Query Frame = 1 
Query:  340 GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            G++GRFGG++VPETLI  L  LE  +    QD +F +EL   LR++VGR   LY AERLT+H       G +IYLKRED N  GAHKINN + QA++AKRMG++ I+A TGAGQHGV              V+MG  DM +QS  V  M+LL
Sbjct:   28 GRYGRFGGRYVPETLIPALDELEQAYEAAKQDPEFLDELDRLLREFVGRPNSLYLAERLTEH-----AGGAKIYLKREDQNFTGAHKINNCLAQALLAKRMGKQKIIAETGAGQHGVASATAAALLGLSCVVYMGEEDMRRQSLNVFRMQLL 174
[Close]
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_BACST (Tryptophan synthase beta chain OS=Bacillus stearothermophilus GN=trpB PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 2.095e-35
Identity = 80/152 (52.63%), Postives = 97/152 (63.82%), Query Frame = 1 
Query:  340 GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            G+FG FGGKFVPETL+  L  +EAE +  L D  F++E    L+ Y GR TPL FA  LT         G ++YLKREDLNH GAHKINNAIGQA++AKRMG+K ++A TGAGQHGV              VFMG  D+++Q   V  MKLL
Sbjct:    9 GRFGDFGGKFVPETLMLPLEEIEAELDKALADESFKQEYIRILQHYSGRPTPLTFAPNLTRQLG-----GAKMYLKREDLNHTGAHKINNAIGQALLAKRMGKKKLIAETGAGQHGVAAATVAAHFGMDCIVFMGEEDIKRQELNVFRMKLL 155
The following BLAST results are available for this feature:
BLAST of CX043277 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 425
Match NameE-valueIdentityDescription
TRPB_BACCZ1.228e-3550.00Tryptophan synthase beta chain OS=Bacillus cereus ... [more]
TRPB_BACC21.228e-3550.66Tryptophan synthase beta chain OS=Bacillus cereus ... [more]
TRPB_BACAN1.228e-3550.00Tryptophan synthase beta chain OS=Bacillus anthrac... [more]
TRPB_BACAC1.228e-3550.00Tryptophan synthase beta chain OS=Bacillus anthrac... [more]
TRPB_BACAA1.228e-3550.00Tryptophan synthase beta chain OS=Bacillus anthrac... [more]
TRPB_PSEPF1.604e-3550.66Tryptophan synthase beta chain OS=Pseudomonas fluo... [more]
TRPB_BACWK1.604e-3550.66Tryptophan synthase beta chain OS=Bacillus weihens... [more]
TRPB_BACCQ1.604e-3550.00Tryptophan synthase beta chain OS=Bacillus cereus ... [more]
TRPB_DEIRA2.095e-3550.66Tryptophan synthase beta chain OS=Deinococcus radi... [more]
TRPB_BACST2.095e-3552.63Tryptophan synthase beta chain OS=Bacillus stearot... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_10A07_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-10A07-B14-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043277 ID=CX043277; Name=CX043277; organism=Citrus sinensis; type=EST; length=796bp
AAACAGGATAACATTTTTATGTATATGTATAGGTGTGTGTGTGTTTAAAG
ATATCACAAGCCAAAATCGTCTCTTAATCGCCACACATACTGCATACAGA
GAAGTGTTTTTGCGCCCACTAACATGGATATTGTTTGCAATAACATAAGT
TTTCAGCTTCCTCACAAATTATCTATTACACGAACGCCATTCACATTCAC
AACAACAAAGAGTCGTACGGGGCCGTACTGCTCTTTACAAAAGTACTCGA
CCTCGAGTCCCATTATGAGAAAGCCTTTGATAAACAGCTTATTACCTAAA
ACTGATCATGATCATCGTGAGTACTGGAAACTCAATCCAGGAAAATTTGG
GAGATTTGGAGGAAAGTTTGTGCCTGAGACACTAATCACTTGTTTGAGCC
TACTTGAAGCTGAATTCAACTTTGTTTTGCAGGATACTAAGTTTCAGGAG
GAGCTGTCGACTGCATTAAGAGACTATGTAGGACGGGAGACGCCTCTTTA
TTTTGCTGAGAGGCTGACAGATCATTACAGGAACGAAAAGGGAGAAGGGC
CAGAGATTTATCTGAAAAGAGAAGATCTCAACCATGTGGGTGCACACAAG
ATCAACAACGCCATAGGACAGGCAATGATAGCCAAGCGCATGGGCCGGAA
AAGTATTGTCGCGGCCACCGGTGCTGGACAGCATGGCGTCGCTACAGCTG
CTGCATGCGCAAAACTGGCTTTGGACTGTACTGTGTTCATGGGCACCGCT
GATATGGAGAAACAATCCTCTAAAGTGCTCCTAATGAAGCTACTAG
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