CX043277

Overview
NameCX043277
Unique NameCX043277
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length796
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX043277_ssr33 microsatellite CX043277_ssr33:33..44. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig3563 contig Csv1_Contig3563:1..796. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_BACC3 (Tryptophan synthase beta chain OS=Bacillus cereus (strain 03BB102) GN=trpB PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 2.095e-35
Identity = 76/152 (50.00%), Postives = 99/152 (65.13%), Query Frame = 1
Query:  340 GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            G +G +GG++VPETL+  +  LE  +   ++D  FQ+EL+  L  YVGRETPLYFAE +T++       G +IYLKREDLNH GAHKINN IGQA++A RMG+K +VA TGAGQHGV              +FMG  D+ +Q   V  M+LL
Sbjct:   10 GHYGIYGGRYVPETLMQSVLELEEAYKEAMEDEAFQKELNHYLNTYVGRETPLYFAENMTEYCG-----GAKIYLKREDLNHTGAHKINNTIGQALLAVRMGKKKVVAETGAGQHGVATATVCALLGLECVIFMGEEDVRRQKLNVFRMELL 156          
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_BACAH (Tryptophan synthase beta chain OS=Bacillus thuringiensis (strain Al Hakam) GN=trpB PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 2.095e-35
Identity = 76/152 (50.00%), Postives = 99/152 (65.13%), Query Frame = 1
Query:  340 GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            G +G +GG++VPETL+  +  LE  +   ++D  FQ+EL+  L  YVGRETPLYFAE +T++       G +IYLKREDLNH GAHKINN IGQA++A RMG+K +VA TGAGQHGV              +FMG  D+ +Q   V  M+LL
Sbjct:   10 GHYGIYGGRYVPETLMQSVLELEEAYKEAMEDEAFQKELNHYLNTYVGRETPLYFAENMTEYCG-----GAKIYLKREDLNHTGAHKINNTIGQALLAVRMGKKKVVAETGAGQHGVATATVCALLGLECVIFMGEEDVRRQKLNVFRMELL 156          
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_AZOVD (Tryptophan synthase beta chain OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=trpB PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 2.095e-35
Identity = 77/152 (50.66%), Postives = 99/152 (65.13%), Query Frame = 1
Query:  340 GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            G FGRFGG++V ETL+  +  L  E+     D  F EEL+   RDYVGR +PLYFAERLT+H       G +IYLKRE+LNH GAHKINN IGQ ++A+RMG++ I+A TGAG HGV              ++MGT D+++Q + V  MKLL
Sbjct:   14 GLFGRFGGQYVAETLMPLILDLAEEYERAKVDPAFLEELAYFQRDYVGRPSPLYFAERLTEHCG-----GAKIYLKREELNHTGAHKINNCIGQILLARRMGKQRIIAETGAGMHGVATATVAARFGLQCVIYMGTTDIDRQQANVFRMKLL 160          
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB2_WOLSU (Tryptophan synthase beta chain 2 OS=Wolinella succinogenes GN=trpB2 PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 2.095e-35
Identity = 77/152 (50.66%), Postives = 99/152 (65.13%), Query Frame = 1
Query:  340 GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            G FG+FGG+FVPETL+  L  LE+ +N +  D +F  E+   L++YVGR +PLY+AERL+D        G +IYLKREDLNH GAHKINN + Q ++AKR+G+K I+A TGAGQHGV              VFMG+ D  +Q   V  MKLL
Sbjct:   17 GHFGKFGGRFVPETLMPALLELESAYNELRFDREFWSEVDYYLKEYVGRPSPLYYAERLSDEL------GAKIYLKREDLNHTGAHKINNTVIQGLLAKRLGKKKIIAETGAGQHGVATATIAALLGLECEVFMGSKDTARQELNVFRMKLL 162          
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_OLICO (Tryptophan synthase beta chain OS=Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) GN=trpB PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.736e-35
Identity = 74/152 (48.68%), Postives = 99/152 (65.13%), Query Frame = 1
Query:  340 GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            G FG FGG+FV ETL+  +  LE  +     D  FQ+E++  L+DYVGR +PLYFAERLT+H       G +IYLKRE+LNH G+HK+NN +GQ M+A+RMG+K I+A TGAGQHGV              V+MG  D+ +Q   V+ M++L
Sbjct:   17 GHFGTFGGRFVAETLMPLILDLEKAYAAAKADPSFQKEMNGYLKDYVGRPSPLYFAERLTEHLG-----GAKIYLKREELNHTGSHKVNNVLGQIMVARRMGKKRIIAETGAGQHGVATATLCARFGLECIVYMGAVDVARQEPNVIRMEML 163          
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_BACCR (Tryptophan synthase beta chain OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=trpB PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 3.573e-35
Identity = 75/152 (49.34%), Postives = 99/152 (65.13%), Query Frame = 1
Query:  340 GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            G +G +GG++VPETL+  +  LE  +   +QD  FQ+EL+  L+ Y+GRETPLY+AE +T +       G +IYLKREDLNH GAHKINN IGQA++A RMG+K +VA TGAGQHGV              +FMG  D+ +Q   V  M+LL
Sbjct:   10 GHYGIYGGRYVPETLMQSVLELEEAYKEAMQDEAFQKELNHYLKTYIGRETPLYYAENMTKYCG-----GAKIYLKREDLNHTGAHKINNTIGQALLAVRMGKKKVVAETGAGQHGVATATVCALLGLECVIFMGEEDVRRQKLNVFRMELL 156          
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_PHEZH (Tryptophan synthase beta chain OS=Phenylobacterium zucineum (strain HLK1) GN=trpB PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 4.667e-35
Identity = 79/167 (47.31%), Postives = 102/167 (61.08%), Query Frame = 1
Query:  295 PKTDHDHREYWKLNPGKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            P   +D+  Y  L  G+FG +GG++VPETL+  +  L A +     D  FQ EL+  L  YVGR +PLYFAERLT HY      G +IYLKRE+LNH G+HKINN +GQ ++A+RMG+  I+A TGAGQHGV              V+MG  D+E+Q   V  M LL
Sbjct:    4 PSRPNDYAAYPDLK-GRFGDYGGQYVPETLMPLVHELTAAYEAAKADPAFQAELAGYLTHYVGRPSPLYFAERLTRHYG-----GAKIYLKREELNHTGSHKINNCMGQILLAQRMGKTRIIAETGAGQHGVATATVCARFGLPCVVYMGAVDVERQKPNVFRMNLL 164          
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_ACIBL (Tryptophan synthase beta chain OS=Acidobacteria bacterium (strain Ellin345) GN=trpB PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 4.667e-35
Identity = 76/152 (50.00%), Postives = 98/152 (64.47%), Query Frame = 1
Query:  340 GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            G FG +GG+FVPETL+  L  LEA +    +D KF+EE+ + LR+Y GR TPL+ A+ LT     +K  G +IYLKREDL H GAHKINN IGQ ++A+RMG+  I+A TGAGQHGV              V+MG+ D+ +Q   V  MKLL
Sbjct:   22 GYFGSYGGRFVPETLMAALQELEAAYEAAKRDKKFKEEIESLLREYAGRPTPLFLAKNLT-----QKLGGAKIYLKREDLLHTGAHKINNCIGQGLLARRMGKHRIIAETGAGQHGVASATVAALFGMECVVYMGSEDVRRQELNVFRMKLL 168          
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_BRAJA (Tryptophan synthase beta chain OS=Bradyrhizobium japonicum GN=trpB PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 6.095e-35
Identity = 74/152 (48.68%), Postives = 99/152 (65.13%), Query Frame = 1
Query:  340 GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            G FG FGG+FV ETL+  +  LE  +     D  FQ E++  L++YVGR +PLYFAERLT+H       G +IYLKRE+LNH G+HK+NN +GQ M+A+RMG+K I+A TGAGQHGV              V+MG  D+E+Q   V+ M++L
Sbjct:   17 GHFGIFGGRFVAETLMPLILDLEKAYTAAKADPAFQAEMNGYLKNYVGRPSPLYFAERLTEHLG-----GAKIYLKREELNHTGSHKVNNVLGQIMLARRMGKKRIIAETGAGQHGVATATLCARFGLECVVYMGAVDVERQQPNVIRMEML 163          
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_BACV8 (Tryptophan synthase beta chain OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=trpB PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 6.095e-35
Identity = 76/152 (50.00%), Postives = 97/152 (63.82%), Query Frame = 1
Query:  340 GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            G +G FGG ++PE L  C+  L+  ++ VL+   F++E    LRDYVGR +PLY A RL+  Y      G +IYLKREDLNH GAHKINNAIGQ ++AKRMG+K I+A TGAGQHGV              V+MG  D+E+Q   V  MK+L
Sbjct:   10 GYYGEFGGAYIPEILHRCVEELQNAYSKVLESEGFKQEFHQLLRDYVGRPSPLYLANRLSKKY------GCKIYLKREDLNHTGAHKINNAIGQVLLAKRMGKKRIIAETGAGQHGVATATVCALMNMQCIVYMGKTDVERQHINVEKMKML 155          
The following BLAST results are available for this feature:
BLAST of CX043277 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 425
Match NameE-valueIdentityDescription
TRPB_BACC32.095e-3550.00Tryptophan synthase beta chain OS=Bacillus cereus ... [more]
TRPB_BACAH2.095e-3550.00Tryptophan synthase beta chain OS=Bacillus thuring... [more]
TRPB_AZOVD2.095e-3550.66Tryptophan synthase beta chain OS=Azotobacter vine... [more]
TRPB2_WOLSU2.095e-3550.66Tryptophan synthase beta chain 2 OS=Wolinella succ... [more]
TRPB_OLICO2.736e-3548.68Tryptophan synthase beta chain OS=Oligotropha carb... [more]
TRPB_BACCR3.573e-3549.34Tryptophan synthase beta chain OS=Bacillus cereus ... [more]
TRPB_PHEZH4.667e-3547.31Tryptophan synthase beta chain OS=Phenylobacterium... [more]
TRPB_ACIBL4.667e-3550.00Tryptophan synthase beta chain OS=Acidobacteria ba... [more]
TRPB_BRAJA6.095e-3548.68Tryptophan synthase beta chain OS=Bradyrhizobium j... [more]
TRPB_BACV86.095e-3550.00Tryptophan synthase beta chain OS=Bacteroides vulg... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_10A07_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-10A07-B14-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043277 ID=CX043277; Name=CX043277; organism=Citrus sinensis; type=EST; length=796bp
AAACAGGATAACATTTTTATGTATATGTATAGGTGTGTGTGTGTTTAAAG
ATATCACAAGCCAAAATCGTCTCTTAATCGCCACACATACTGCATACAGA
GAAGTGTTTTTGCGCCCACTAACATGGATATTGTTTGCAATAACATAAGT
TTTCAGCTTCCTCACAAATTATCTATTACACGAACGCCATTCACATTCAC
AACAACAAAGAGTCGTACGGGGCCGTACTGCTCTTTACAAAAGTACTCGA
CCTCGAGTCCCATTATGAGAAAGCCTTTGATAAACAGCTTATTACCTAAA
ACTGATCATGATCATCGTGAGTACTGGAAACTCAATCCAGGAAAATTTGG
GAGATTTGGAGGAAAGTTTGTGCCTGAGACACTAATCACTTGTTTGAGCC
TACTTGAAGCTGAATTCAACTTTGTTTTGCAGGATACTAAGTTTCAGGAG
GAGCTGTCGACTGCATTAAGAGACTATGTAGGACGGGAGACGCCTCTTTA
TTTTGCTGAGAGGCTGACAGATCATTACAGGAACGAAAAGGGAGAAGGGC
CAGAGATTTATCTGAAAAGAGAAGATCTCAACCATGTGGGTGCACACAAG
ATCAACAACGCCATAGGACAGGCAATGATAGCCAAGCGCATGGGCCGGAA
AAGTATTGTCGCGGCCACCGGTGCTGGACAGCATGGCGTCGCTACAGCTG
CTGCATGCGCAAAACTGGCTTTGGACTGTACTGTGTTCATGGGCACCGCT
GATATGGAGAAACAATCCTCTAAAGTGCTCCTAATGAAGCTACTAG
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