CX043277

Overview
NameCX043277
Unique NameCX043277
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length796
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX043277_ssr33 microsatellite CX043277_ssr33:33..44. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig3563 contig Csv1_Contig3563:1..796. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_BACC1 (Tryptophan synthase beta chain OS=Bacillus cereus (strain ATCC 10987) GN=trpB PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 6.095e-35
Identity = 75/152 (49.34%), Postives = 99/152 (65.13%), Query Frame = 1 
Query:  340 GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            G +G +GG++VPETL+  +  LE  +   ++D  FQ+EL+  L+ YVGRETPLY+AE +T +       G +IYLKREDLNH GAHKINN IGQA++A RMG+K +VA TGAGQHGV              +FMG  D+ +Q   V  M+LL
Sbjct:   10 GHYGIYGGRYVPETLMQSVLELEEAYKEAMEDEAFQKELNHYLKTYVGRETPLYYAENMTKYCG-----GAKIYLKREDLNHTGAHKINNTIGQALLAVRMGKKKVVAETGAGQHGVATATVCALLGLECVIFMGEEDVRRQKLNVFRMELL 156
[Close]
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_ALKMQ (Tryptophan synthase beta chain OS=Alkaliphilus metalliredigens (strain QYMF) GN=trpB PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 6.095e-35
Identity = 77/153 (50.33%), Postives = 100/153 (65.36%), Query Frame = 1 
Query:  337 PGKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            P KFG+FGG+FVPETL+  L  LE +F    +D +FQE     +R+Y GR TPLY+AE LT     +K  G +IYLKREDLNH GAHKINN IGQ ++A++M +K I+A TGAGQHGV              V+MG  D+E+Q+  V  M++L
Sbjct:    8 PKKFGKFGGQFVPETLMNALIELERQFIQTKEDDEFQEMYRYYVREYSGRPTPLYYAENLT-----KKLGGGKIYLKREDLNHTGAHKINNVIGQVLLARKMKKKRIIAETGAGQHGVATATICAMFDLECVVYMGAEDIERQALNVFKMEML 155
[Close]
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_PSEPW (Tryptophan synthase beta chain OS=Pseudomonas putida (strain W619) GN=trpB PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 7.961e-35
Identity = 74/152 (48.68%), Postives = 96/152 (63.16%), Query Frame = 1 
Query:  340 GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            G FG FGG++V ETL+  +  L  E+     D KF EEL+   RDY+GR  PLYFAERLT+H       G +I+ KRE+LNH GAHK+NN IGQ ++AKRMG+K ++A TGAG HGV              ++MG  D+E+Q + V  MKLL
Sbjct:   14 GLFGSFGGRYVAETLMPLVLDLAREYEAAKADPKFLEELAYFQRDYIGRPNPLYFAERLTEHCG-----GAKIFFKREELNHTGAHKVNNCIGQVLLAKRMGKKRLIAETGAGMHGVATATVAARFGLPCVIYMGATDIERQQANVFRMKLL 160
[Close]
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_PSEPU (Tryptophan synthase beta chain OS=Pseudomonas putida GN=trpB PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 7.961e-35
Identity = 74/152 (48.68%), Postives = 96/152 (63.16%), Query Frame = 1 
Query:  340 GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            G FG FGG++V ETL+  +  L  E+     D KF EEL+   RDY+GR  PLYFAERLT+H       G +I+ KRE+LNH GAHK+NN IGQ ++AKRMG+K ++A TGAG HGV              ++MG  D+E+Q + V  MKLL
Sbjct:   14 GLFGSFGGRYVAETLMPLVLDLAREYEAAKADPKFLEELAYFQRDYIGRPNPLYFAERLTEHCG-----GAKIFFKREELNHTGAHKVNNCIGQVLLAKRMGKKRLIAETGAGMHGVATATVAARFGLPCVIYMGATDIERQQANVFRMKLL 160
[Close]
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_PSEPK (Tryptophan synthase beta chain OS=Pseudomonas putida (strain KT2440) GN=trpB PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 7.961e-35
Identity = 74/152 (48.68%), Postives = 96/152 (63.16%), Query Frame = 1 
Query:  340 GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            G FG FGG++V ETL+  +  L  E+     D KF EEL+   RDY+GR  PLYFAERLT+H       G +I+ KRE+LNH GAHK+NN IGQ ++AKRMG+K ++A TGAG HGV              ++MG  D+E+Q + V  MKLL
Sbjct:   14 GLFGSFGGRYVAETLMPLVLDLAREYEAAKADPKFLEELAYFQRDYIGRPNPLYFAERLTEHCG-----GAKIFFKREELNHTGAHKVNNCIGQVLLAKRMGKKRLIAETGAGMHGVATATVAARFGLPCVIYMGATDIERQQANVFRMKLL 160
[Close]
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_PSEPG (Tryptophan synthase beta chain OS=Pseudomonas putida (strain GB-1) GN=trpB PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 7.961e-35
Identity = 74/152 (48.68%), Postives = 96/152 (63.16%), Query Frame = 1 
Query:  340 GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            G FG FGG++V ETL+  +  L  E+     D KF EEL+   RDY+GR  PLYFAERLT+H       G +I+ KRE+LNH GAHK+NN IGQ ++AKRMG+K ++A TGAG HGV              ++MG  D+E+Q + V  MKLL
Sbjct:   14 GLFGSFGGRYVAETLMPLVLDLAREYEAAKADPKFLEELAYFQRDYIGRPNPLYFAERLTEHCG-----GAKIFFKREELNHTGAHKVNNCIGQVLLAKRMGKKRLIAETGAGMHGVATATVAARFGLPCVIYMGATDIERQQANVFRMKLL 160
[Close]
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_PSEP1 (Tryptophan synthase beta chain OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=trpB PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 7.961e-35
Identity = 74/152 (48.68%), Postives = 96/152 (63.16%), Query Frame = 1 
Query:  340 GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            G FG FGG++V ETL+  +  L  E+     D KF EEL+   RDY+GR  PLYFAERLT+H       G +I+ KRE+LNH GAHK+NN IGQ ++AKRMG+K ++A TGAG HGV              ++MG  D+E+Q + V  MKLL
Sbjct:   14 GLFGSFGGRYVAETLMPLVLDLAREYEAAKADPKFLEELAYFQRDYIGRPNPLYFAERLTEHCG-----GAKIFFKREELNHTGAHKVNNCIGQVLLAKRMGKKRLIAETGAGMHGVATATVAARFGLPCVIYMGATDIERQQANVFRMKLL 160
[Close]
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_PSEE4 (Tryptophan synthase beta chain OS=Pseudomonas entomophila (strain L48) GN=trpB PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 7.961e-35
Identity = 74/152 (48.68%), Postives = 96/152 (63.16%), Query Frame = 1 
Query:  340 GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            G FG FGG++V ETL+  +  L  E+     D KF EEL+   RDY+GR  PLYFAERLT+H       G +I+ KRE+LNH GAHK+NN IGQ ++AKRMG+K ++A TGAG HGV              ++MG  D+E+Q + V  MKLL
Sbjct:   14 GLFGSFGGRYVAETLMPLVLDLAREYEAAKADPKFLEELAYFQRDYIGRPNPLYFAERLTEHCG-----GAKIFFKREELNHTGAHKVNNCIGQVLLAKRMGKKRLIAETGAGMHGVATATVAARFGLPCVIYMGATDIERQQANVFRMKLL 160
[Close]
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_BACP2 (Tryptophan synthase beta chain OS=Bacillus pumilus (strain SAFR-032) GN=trpB PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 7.961e-35
Identity = 76/152 (50.00%), Postives = 101/152 (66.45%), Query Frame = 1 
Query:  340 GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            G++G FGGKFVPETL+  L  +E  FN + +D  F++E  + L +Y GR T L +A++L+ +       G +IYLKREDLNH GAHKINNA+GQA++AK+MG+ +I+A TGAGQHGV              VFMG  D+E+QS  V  MKLL
Sbjct:    9 GRYGEFGGKFVPETLMQPLKEIEQAFNELKEDPAFEQEYLSLLHNYSGRPTALTYADQLSAYLG-----GAKIYLKREDLNHTGAHKINNALGQALLAKKMGKSNIIAETGAGQHGVAAATVAAKFGLSCTVFMGKEDVERQSLNVFRMKLL 155
[Close]
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_RHIET (Tryptophan synthase beta chain OS=Rhizobium etli GN=trpB PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 1.040e-34
Identity = 78/152 (51.32%), Postives = 99/152 (65.13%), Query Frame = 1 
Query:  340 GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            G+FG +GG+FV ETL+  +  L+ E+N    D  FQ EL+   RDY+GR +PLYFAERLT     E G G +IY KRED+NH G+HKINN IGQ ++AKRMG+  I+A TGAGQHGV              V+MG  D+E+Q+  V  MKLL
Sbjct:   18 GRFGIYGGRFVAETLMPLILDLQDEWNKAKSDPAFQAELNDLGRDYIGRPSPLYFAERLTA----ELG-GAKIYFKREDMNHTGSHKINNCIGQILLAKRMGKTRIIAETGAGQHGVASAAVAARFGLPCMVYMGATDVERQAPNVFRMKLL 164
The following BLAST results are available for this feature:
BLAST of CX043277 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 425
Match NameE-valueIdentityDescription
TRPB_BACC16.095e-3549.34Tryptophan synthase beta chain OS=Bacillus cereus ... [more]
TRPB_ALKMQ6.095e-3550.33Tryptophan synthase beta chain OS=Alkaliphilus met... [more]
TRPB_PSEPW7.961e-3548.68Tryptophan synthase beta chain OS=Pseudomonas puti... [more]
TRPB_PSEPU7.961e-3548.68Tryptophan synthase beta chain OS=Pseudomonas puti... [more]
TRPB_PSEPK7.961e-3548.68Tryptophan synthase beta chain OS=Pseudomonas puti... [more]
TRPB_PSEPG7.961e-3548.68Tryptophan synthase beta chain OS=Pseudomonas puti... [more]
TRPB_PSEP17.961e-3548.68Tryptophan synthase beta chain OS=Pseudomonas puti... [more]
TRPB_PSEE47.961e-3548.68Tryptophan synthase beta chain OS=Pseudomonas ento... [more]
TRPB_BACP27.961e-3550.00Tryptophan synthase beta chain OS=Bacillus pumilus... [more]
TRPB_RHIET1.040e-3451.32Tryptophan synthase beta chain OS=Rhizobium etli G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_10A07_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-10A07-B14-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043277 ID=CX043277; Name=CX043277; organism=Citrus sinensis; type=EST; length=796bp
AAACAGGATAACATTTTTATGTATATGTATAGGTGTGTGTGTGTTTAAAG
ATATCACAAGCCAAAATCGTCTCTTAATCGCCACACATACTGCATACAGA
GAAGTGTTTTTGCGCCCACTAACATGGATATTGTTTGCAATAACATAAGT
TTTCAGCTTCCTCACAAATTATCTATTACACGAACGCCATTCACATTCAC
AACAACAAAGAGTCGTACGGGGCCGTACTGCTCTTTACAAAAGTACTCGA
CCTCGAGTCCCATTATGAGAAAGCCTTTGATAAACAGCTTATTACCTAAA
ACTGATCATGATCATCGTGAGTACTGGAAACTCAATCCAGGAAAATTTGG
GAGATTTGGAGGAAAGTTTGTGCCTGAGACACTAATCACTTGTTTGAGCC
TACTTGAAGCTGAATTCAACTTTGTTTTGCAGGATACTAAGTTTCAGGAG
GAGCTGTCGACTGCATTAAGAGACTATGTAGGACGGGAGACGCCTCTTTA
TTTTGCTGAGAGGCTGACAGATCATTACAGGAACGAAAAGGGAGAAGGGC
CAGAGATTTATCTGAAAAGAGAAGATCTCAACCATGTGGGTGCACACAAG
ATCAACAACGCCATAGGACAGGCAATGATAGCCAAGCGCATGGGCCGGAA
AAGTATTGTCGCGGCCACCGGTGCTGGACAGCATGGCGTCGCTACAGCTG
CTGCATGCGCAAAACTGGCTTTGGACTGTACTGTGTTCATGGGCACCGCT
GATATGGAGAAACAATCCTCTAAAGTGCTCCTAATGAAGCTACTAG
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