EY665470

Overview
NameEY665470
Unique NameEY665470
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length878
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665470 vs. ExPASy Swiss-Prot
Match: GLYM_YEAST (Serine hydroxymethyltransferase, mitochondrial OS=Saccharomyces cerevisiae GN=SHM1 PE=1 SV=2)

HSP 1 Score: 228.024 bits (580), Expect = 5.415e-59
Identity = 115/217 (53.00%), Postives = 152/217 (70.05%), Query Frame = 3
Query:  192 LNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDT-KKISAVSIFFETMPYRLNESTGYIDYDQLEKSAPLFRAKLIVAGASAYARMYDY*PIPQVCHKQKAIMVGKNWHTLRGLV 839
            ++ P+   DPE+ DI++ E+ RQ   + LIPSENFTS +VM  +GS + NKYSEGYPG RYYGGNE ID +ESLCQ RALE + LDP KWGVNVQ LSG+P+N  VY+A++   +R+M LDLP GGHLSHGYQ  +   IS +S +F++MPY ++ +TG IDYD L+  A  FR K+IVAG SAY+R+ DY    ++     A ++    H + GLV
Sbjct:   29 VSKPVSEGDPEMFDILQQERHRQKHSITLIPSENFTSKAVMDLLGSELQNKYSEGYPGERYYGGNEIIDKSESLCQARALELYGLDPAKWGVNVQPLSGAPANLYVYSAIMNVGERLMGLDLPDGGHLSHGYQLKSGTPISFISKYFQSMPYHVDHTTGLIDYDNLQVLAKAFRPKVIVAGTSAYSRLIDYARFKEISQGCGAYLMSDMAH-ISGLV 244          
BLAST of EY665470 vs. ExPASy Swiss-Prot
Match: GLYC_ENCCU (Serine hydroxymethyltransferase, cytosolic OS=Encephalitozoon cuniculi GN=SHMT-1 PE=3 SV=2)

HSP 1 Score: 212.231 bits (539), Expect = 3.075e-54
Identity = 106/201 (52.74%), Postives = 138/201 (68.66%), Query Frame = 3
Query:  201 PLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSAPLFRAKLIVAGASAYARMYDY*PIPQVCHKQKAIM 803
            PLE+ DPE+  +I  E  RQ K + LI SEN+   S M+A GSV+TNKYSEG  G RYYGG  ++D  E LCQKRALE F LDP+ WGVNVQ  SGSP+NF +YTA++ P  RIM LDLP GGHL+HGY+T T+KISA S++F++ PY +  S G IDY+ LEK+   F   +++ G SAY+R  DY  +  +  +  A +
Sbjct:   13 PLEMADPELHALICGEVERQKKTINLIASENYAHQSAMEACGSVLTNKYSEGRVGERYYGGTHWVDRIELLCQKRALELFGLDPDVWGVNVQPYSGSPANFAIYTAVVPPGGRIMGLDLPSGGHLTHGYKTKTRKISASSVYFDSRPYTVG-SNGLIDYEGLEKTFTDFLPHILICGYSAYSRDIDYKRLQSIAGRNGAFL 212          
BLAST of EY665470 vs. ExPASy Swiss-Prot
Match: GLYA_THETN (Serine hydroxymethyltransferase OS=Thermoanaerobacter tengcongensis GN=glyA PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.870e-43
Identity = 100/219 (45.66%), Postives = 135/219 (61.64%), Query Frame = 3
Query:  216 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSAPLFRAKLIVAGASAYARMYDY*PIPQVCHKQKAIMVGKNWHTLRGLVWC-WGPFPFPF 869
            DPEIA++I  E  RQ   +ELI SENF S +VM+A+G+ +TNKY+EGYPG RYYGG EY+DMAE L ++R  + F  +      NVQ  SG+ +N   Y ALLKP D ++ +DL HGGHL+HG      K++     +  + Y + E TGYIDYDQ+E  A   + KLIVAGASAY R+ D+    ++  K  A ++    H + GLV     P P P+
Sbjct:   10 DPEIAEVILKELNRQRNKIELIASENFVSRAVMEAMGTPLTNKYAEGYPGRRYYGGCEYVDMAEELARERLKKLFGAE----HANVQPHSGAQANMAAYFALLKPGDTVLGMDLAHGGHLTHG-----SKVNFSGQIYNFVSYGVREDTGYIDYDQVEDLAKKHKPKLIVAGASAYPRIIDFKKFREIADKVGAYLMVDMAH-IAGLVAAGLHPNPVPY 218          
BLAST of EY665470 vs. ExPASy Swiss-Prot
Match: GLYA_THEPX (Serine hydroxymethyltransferase OS=Thermoanaerobacter sp. (strain X514) GN=glyA PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 2.442e-43
Identity = 99/219 (45.21%), Postives = 135/219 (61.64%), Query Frame = 3
Query:  216 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSAPLFRAKLIVAGASAYARMYDY*PIPQVCHKQKAIMVGKNWHTLRGLVWC-WGPFPFPF 869
            DPEIAD IE E  RQ   +ELI SENF S +VM+A+GS +TNKY+EGYP  RYYGG EY+D+AE L ++R  + F  +      NVQ  SG+ +N   Y AL+KP D ++ +DL HGGHL+HG      K++     +  + Y + E TGYIDYD++E+ A   + KLIVAGASAY R+ D+    ++  K  A ++    H + GLV     P P P+
Sbjct:   10 DPEIADAIEKELIRQRNKIELIASENFVSRAVMEAMGSPLTNKYAEGYPNKRYYGGCEYVDIAEELARERLKKLFGAE----HANVQPHSGAQANMAAYFALIKPGDTVLGMDLAHGGHLTHG-----SKVNFSGQIYNFVSYGVREDTGYIDYDEVERVAKKHKPKLIVAGASAYPRIIDFKRFREIADKVGAYLMVDMAH-IAGLVAAGLHPNPVPY 218          
BLAST of EY665470 vs. ExPASy Swiss-Prot
Match: GLYA_THEP3 (Serine hydroxymethyltransferase OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=glyA PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 2.442e-43
Identity = 99/219 (45.21%), Postives = 135/219 (61.64%), Query Frame = 3
Query:  216 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSAPLFRAKLIVAGASAYARMYDY*PIPQVCHKQKAIMVGKNWHTLRGLVWC-WGPFPFPF 869
            DPEIAD IE E  RQ   +ELI SENF S +VM+A+GS +TNKY+EGYP  RYYGG EY+D+AE L ++R  + F  +      NVQ  SG+ +N   Y AL+KP D ++ +DL HGGHL+HG      K++     +  + Y + E TGYIDYD++E+ A   + KLIVAGASAY R+ D+    ++  K  A ++    H + GLV     P P P+
Sbjct:   10 DPEIADAIEKELIRQRNKIELIASENFVSRAVMEAMGSPLTNKYAEGYPNKRYYGGCEYVDIAEELARERLKKLFGAE----HANVQPHSGAQANMAAYFALIKPGDTVLGMDLAHGGHLTHG-----SKVNFSGQIYNFVSYGVREDTGYIDYDEVERVAKKHKPKLIVAGASAYPRIIDFKRFREIADKVGAYLMVDMAH-IAGLVAAGLHPNPVPY 218          
BLAST of EY665470 vs. ExPASy Swiss-Prot
Match: GLYA_DESAA (Serine hydroxymethyltransferase OS=Desulfatibacillum alkenivorans (strain AK-01) GN=glyA PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 2.442e-43
Identity = 105/220 (47.73%), Postives = 133/220 (60.45%), Query Frame = 3
Query:  213 VDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSAPLFRAKLIVAGASAYARMYDY*PIPQVCHKQKAIMVGKNWHTLRGLVWCW-GPFPFPF 869
            VDPE A  IE E  RQ   LELI SEN  S +VM A GSVMTNKY+EGYPG RYYGG E++D+AE+L + RA E F+ D      NVQ  SGS +N  VY ALL+P D ++ +DL HGGHL+HG       +S     F  + Y + E TG IDYDQL   A   + KLIVAGASAY R+ D+  + ++  +  A ++    H + GLV     P P P+
Sbjct:    9 VDPEAAKAIEQELDRQQFTLELIASENIASPAVMAAQGSVMTNKYAEGYPGHRYYGGCEFVDVAENLARDRAKELFQAD----YANVQPHSGSQANMGVYFALLEPGDTVLGMDLSHGGHLTHG-----SPVSFSGRIFNFIHYGVKEKTGTIDYDQLRSLAKEHKPKLIVAGASAYPRIIDFPELEKIARETGAYLMVDMAH-IAGLVAAGEHPSPLPY 218          
BLAST of EY665470 vs. ExPASy Swiss-Prot
Match: GLYA_CHLTE (Serine hydroxymethyltransferase OS=Chlorobium tepidum GN=glyA PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 2.442e-43
Identity = 97/209 (46.41%), Postives = 136/209 (65.07%), Query Frame = 3
Query:  195 NAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSAPLFRAKLIVAGASAYARMYDY*PIPQVCHKQKAIMVGKNWH 821
            N  L+ +DPE+ + I +E  RQ + LELI SENFTS +VM+A GSVMTNKY+EGYPG RYYGG E++D+AE+L + RA + F  +     VNVQ  SGS +N  V  A+LKP D IM LDL HGGHL+HG      K++    FF+   Y +++ TG ID +++E+ A   + KLI+ GASAY++ +D+    +V  K  A+++    H
Sbjct:    3 NDILKRLDPEVFEAIANETKRQTETLELIASENFTSKAVMEACGSVMTNKYAEGYPGKRYYGGCEFVDVAENLARDRAKKLFGCE----YVNVQPHSGSSANMAVLFAVLKPGDAIMGLDLSHGGHLTHG-----SKVNFSGQFFDAHSYGVDKETGIIDMNKVEEMARRVKPKLIITGASAYSQGFDFKAFREVADKVGALLMADIAH 202          
BLAST of EY665470 vs. ExPASy Swiss-Prot
Match: GLYA_NITSB (Serine hydroxymethyltransferase OS=Nitratiruptor sp. (strain SB155-2) GN=glyA PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 7.105e-43
Identity = 101/219 (46.12%), Postives = 138/219 (63.01%), Query Frame = 3
Query:  216 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSAPLFRAKLIVAGASAYARMYDY*PIPQVCHKQKAIMVGKNWHTLRGLVWCW-GPFPFPF 869
            DP + +I E E  RQ   LE+I SENFTS +VM+A+GSV TNKY+EGYPG RYYGG EY D  E L  +RA E F  +     VNVQ  SGS +N  VY ALLKP+D+I+ +DL HGGHL+HG      K++A    +++  Y +N+  G+IDYD++   A + + KLIV GASAY R+ D+    ++  +  A+++    H + GLV     P PFP+
Sbjct:    8 DPAVYEIFEKELQRQTDHLEMIASENFTSPAVMEAMGSVFTNKYAEGYPGKRYYGGCEYADAIEELAIQRAKELFGCE----FVNVQPHSGSQANQGVYLALLKPYDKILGMDLSHGGHLTHG-----AKVNASGKIYQSFFYGVNDE-GWIDYDRVLDIAKIVKPKLIVCGASAYPRVIDFKKFREIADEVGALLMADIAH-IAGLVAAGEHPSPFPY 215          
BLAST of EY665470 vs. ExPASy Swiss-Prot
Match: GLYA_CHLP8 (Serine hydroxymethyltransferase OS=Chlorobaculum parvum (strain NCIB 8327) GN=glyA PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 9.280e-43
Identity = 95/206 (46.12%), Postives = 133/206 (64.56%), Query Frame = 3
Query:  204 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSAPLFRAKLIVAGASAYARMYDY*PIPQVCHKQKAIMVGKNWH 821
            L+ +DPE+ + I +E  RQ + LELI SENFTS +VM+A GSVMTNKY+EGYPG RYYGG E++D+AE+L + RA + F  +     VNVQ  SGS +N  V  A+LKP D IM LDL HGGHL+HG      K++    FF+   Y +++ TG ID + +E+ A   + KLI+ GASAY++ +D+    ++  K  A ++    H
Sbjct:    6 LKRLDPEVFEAIANETRRQTETLELIASENFTSTAVMEACGSVMTNKYAEGYPGKRYYGGCEFVDVAENLARDRAKKLFGCE----YVNVQPHSGSSANMAVLFAVLKPGDSIMGLDLSHGGHLTHG-----SKVNFSGQFFDAHSYGVDKETGIIDMNAVEEMALKVKPKLIITGASAYSQGFDFKAFREIADKVGAFLMADIAH 202          
BLAST of EY665470 vs. ExPASy Swiss-Prot
Match: GLYA_ACIBL (Serine hydroxymethyltransferase OS=Acidobacteria bacterium (strain Ellin345) GN=glyA PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 1.212e-42
Identity = 99/226 (43.81%), Postives = 139/226 (61.50%), Query Frame = 3
Query:  189 QLNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSAPLFRAKLIVAGASAYARMYDY*PIPQVCHKQKAIMVGKNWHTLRGLVWCWGPFPFP 866
            +++  L   DP+IA+ I +E+ RQ +GLELI SENF S +V+QA GSV TNKY+EGYPG RYYGG EY D+ E+L + RA E F  +      NVQ  SGS +N + Y A+L+P D I+ L+L HGGHL+HG+      ++     ++ +PY + + T  IDYD+LEK A     K+IV G SAY R++D+  + ++  K  A+ +    H   GLV   G  P P
Sbjct:    4 RMSQSLNEEDPQIAEAIANEERRQHEGLELIASENFVSEAVLQAAGSVFTNKYAEGYPGKRYYGGCEYADVVENLARDRAKELFGAE----HANVQPHSGSSANMEAYGAILQPGDTILGLNLAHGGHLTHGH-----PLNFSGKTYKIVPYGVTKETETIDYDELEKLALEHHPKVIVGGGSAYPRIFDFKRMREIADKAGALFMVDMAH-FAGLV-AGGAHPSP 218          
The following BLAST results are available for this feature:
BLAST of EY665470 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYM_YEAST5.415e-5953.00Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYC_ENCCU3.075e-5452.74Serine hydroxymethyltransferase, cytosolic OS=Ence... [more]
GLYA_THETN1.870e-4345.66Serine hydroxymethyltransferase OS=Thermoanaerobac... [more]
GLYA_THEPX2.442e-4345.21Serine hydroxymethyltransferase OS=Thermoanaerobac... [more]
GLYA_THEP32.442e-4345.21Serine hydroxymethyltransferase OS=Thermoanaerobac... [more]
GLYA_DESAA2.442e-4347.73Serine hydroxymethyltransferase OS=Desulfatibacill... [more]
GLYA_CHLTE2.442e-4346.41Serine hydroxymethyltransferase OS=Chlorobium tepi... [more]
GLYA_NITSB7.105e-4346.12Serine hydroxymethyltransferase OS=Nitratiruptor s... [more]
GLYA_CHLP89.280e-4346.12Serine hydroxymethyltransferase OS=Chlorobaculum p... [more]
GLYA_ACIBL1.212e-4243.81Serine hydroxymethyltransferase OS=Acidobacteria b... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-102-002-E03-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665470 ID=EY665470; Name=EY665470; organism=Citrus sinensis; type=EST; length=878bp
AAACCGCAGGACGGGTCGGGATTCCGGGTCGACCCACGCGTCCGATGGCT
CTGGCTCTTCGCCCCTTTTCATCTTCCCTCGACAAACCCACTCGTCCTCT
CTTCCCTTTTTCCTCCCTCTACTACATGTCATCTTTGCCAAATGAAGCTG
TTTACGAGAAAGAGAAAAATGGTGTCACTTGGCCAAAACAACTGAATGCT
CCACTTGAGGTCGTTGATCCTGAGATTGCTGACATTATCGAGCATGAAAA
AGCACGACAATGGAAGGGACTTGAACTCATTCCTTCAGAGAACTTTACTT
CAGTATCCGTGATGCAAGCTGTGGGGTCTGTCATGACCAACAAGTACAGT
GAAGGATATCCAGGTGCAAGATATTATGGAGGAAACGAGTATATTGACAT
GGCGGAATCCTTATGTCAGAAGCGAGCTCTGGAAGCATTTCGGTTGGATC
CTGAAAAATGGGGAGTGAATGTGCAGTCTCTGTCTGGATCTCCATCTAAT
TTTCAAGTCTACACTGCATTGTTAAAACCTCATGATAGGATCATGGCACT
TGATCTTCCTCATGGTGGGCATCTCTCACACGGCTATCAGACAGATACCA
AAAAGATATCTGCAGTGTCCATATTTTTTGAAACAATGCCATACAGATTG
AATGAGAGCACTGGCTATATAGACTATGACCAATTGGAAAAAAGTGCCCC
CCTCTTCAGGGCAAAATTGATTGTTGCTGGGGCTAGTGCTTATGCACGAA
TGTATGATTATTAACCAATTCCCCAGGTTTGCCACAAACAAAAAGCTATA
ATGGTTGGCAAAAATTGGCACACATTAAGGGGTTTGGTTTGGTGCTGGGG
GCCCTTCCCTTTCCCCTTTTTAAGATAT
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