EY665449

Overview
NameEY665449
Unique NameEY665449
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length850
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY665449_ssr160 microsatellite EY665449_ssr160:160..171. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY665449 vs. ExPASy Swiss-Prot
Match: G3P_HELPJ (Glyceraldehyde-3-phosphate dehydrogenase OS=Helicobacter pylori J99 GN=gapA PE=3 SV=1)

HSP 1 Score: 49.6766 bits (117), Expect = 5.996e-11
Identity = 27/61 (44.26%), Postives = 39/61 (63.93%), Query Frame = 1
Query:  202 LKVAINGFGRIGRNFLRCWHGRKDS--PLEVVAINDTGGVKQASHLLKYDSTLGIFEADVK 378
            +K+ INGFGRIGR  LR    R D+   LEV+ IND    +  ++LL++DST G+   +V+
Sbjct:    1 MKIFINGFGRIGRCVLRAILERNDTNPQLEVIGINDPANWEILAYLLEHDSTHGLLNKEVR 61          

HSP 2 Score: 38.891 bits (89), Expect = 5.996e-11
Identity = 36/108 (33.33%), Postives = 57/108 (52.78%), Query Frame = 2
Query:  470 GIDLVIEGTGVFVEREGAGKHIQAGAKKVLITAPRKG*HPN---PTVVGGPMRNALQAR*TPSSEMLLGTTNCLAPFLQGSWTKSFGIIQGNPDHPHPSYTWGNQRLL 784
            G+ ++IE +G F+E +    ++  GAKKVL++AP  G +     PT+V G      Q +   S+     TTN +AP +     K+F I +G     H SYT  +Q+L+
Sbjct:   85 GVGVIIECSGKFLEPKTLENYLLLGAKKVLLSAPFMGEYDEKQYPTLVYGVNHFLYQNQAIVSNASC--TTNAIAP-ICAILDKAFSIKEGMLTTIH-SYT-SDQKLI 187          
BLAST of EY665449 vs. ExPASy Swiss-Prot
Match: G3P_HELPY (Glyceraldehyde-3-phosphate dehydrogenase OS=Helicobacter pylori GN=gapA PE=3 SV=1)

HSP 1 Score: 47.3654 bits (111), Expect = 5.996e-11
Identity = 26/61 (42.62%), Postives = 38/61 (62.30%), Query Frame = 1
Query:  202 LKVAINGFGRIGRNFLRCWHGRKDS--PLEVVAINDTGGVKQASHLLKYDSTLGIFEADVK 378
            +K+ INGFGRIGR  LR    R D+   LEV+ IND    +  ++LL++DS  G+   +V+
Sbjct:    1 MKIFINGFGRIGRCVLRAILERNDTNPKLEVIGINDPANWEILAYLLEHDSVHGLLPKEVR 61          

HSP 2 Score: 41.2022 bits (95), Expect = 5.996e-11
Identity = 37/108 (34.26%), Postives = 58/108 (53.70%), Query Frame = 2
Query:  470 GIDLVIEGTGVFVEREGAGKHIQAGAKKVLITAPRKG*HPN---PTVVGGPMRNALQAR*TPSSEMLLGTTNCLAPFLQGSWTKSFGIIQGNPDHPHPSYTWGNQRLL 784
            G+D++IE +G F+E +    ++  GAKKVL++AP  G +     PT+V G      Q +   S+     TTN +AP +     K+F I +G     H SYT  +Q+L+
Sbjct:   85 GVDVIIECSGKFLEPKTLENYLLLGAKKVLLSAPFMGEYDEKQYPTLVYGVNHFCYQNQAIVSNASC--TTNAIAP-ICAILDKAFKIKEGMLTTIH-SYT-SDQKLI 187          
BLAST of EY665449 vs. ExPASy Swiss-Prot
Match: G3P_KLEPN (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Klebsiella pneumoniae GN=gap PE=3 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 6.805e-11
Identity = 39/86 (45.35%), Postives = 54/86 (62.79%), Query Frame = 1
Query:  214 INGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGGLG 471
            INGFGRIGR   R    +K S +E+VAIND    +  +++LKYDST G F+  V+ V    + V+GK I+V + R+P NL W  +G
Sbjct:    1 INGFGRIGRIVFRA--AQKRSDIEIVAINDLLDAEYMAYMLKYDSTHGRFDGTVE-VKDGHLVVNGKKIRVTAERDPANLKWDEVG 83          
BLAST of EY665449 vs. ExPASy Swiss-Prot
Match: G3PA_SINAL (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic (Fragment) OS=Sinapis alba GN=GAPA PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.805e-11
Identity = 50/92 (54.35%), Postives = 56/92 (60.87%), Query Frame = 2
Query:  509 EREGAGKHIQAGAKKVLITAPRKG*HPNPTVVGGPMRNALQAR*TPSSEMLLGTTNCLAPFLQGSWTKSFGIIQGNPDHPHPSYTWGNQRLL 784
            +REGAGKHIQAGAKKVLITAP KG    PT V G          T  S     TTNCLAPF++    + FGII+G     H SYT G+QRLL
Sbjct:    1 DREGAGKHIQAGAKKVLITAPGKG--DIPTYVVGVNAELYSHEDTIISNASC-TTNCLAPFVK-VLDQKFGIIKGTMTTTH-SYT-GDQRLL 86          
BLAST of EY665449 vs. ExPASy Swiss-Prot
Match: G3P_MYCPN (Glyceraldehyde-3-phosphate dehydrogenase OS=Mycoplasma pneumoniae GN=gapA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.887e-11
Identity = 40/93 (43.01%), Postives = 55/93 (59.14%), Query Frame = 1
Query:  184 VAAQAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDG-ISVDGKVIQVVSNRNPVNLPW 459
            +A    ++VAINGFGRIGR   R    +K+  +E+VA+ND       +HLLKYDS  G F+   K V  D  + +D K + V S ++P NLPW
Sbjct:    2 LAKSKTIRVAINGFGRIGRLVFRALLSQKN--IEIVAVNDLTHPDTLAHLLKYDSAHGEFKK--KVVAKDNTLMIDKKKVLVFSEKDPANLPW 90          
BLAST of EY665449 vs. ExPASy Swiss-Prot
Match: G3P_COLLN (Glyceraldehyde-3-phosphate dehydrogenase OS=Colletotrichum lindemuthianum GN=GPDA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.887e-11
Identity = 38/93 (40.86%), Postives = 57/93 (61.29%), Query Frame = 1
Query:  196 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGGLG 471
            A +KV INGFGRIGR   R  +  +   +E+VA+ND     K A+++LKYDST GIF  ++   G D + ++GK ++  + R+P  +PW   G
Sbjct:    2 APIKVGINGFGRIGRIVFR--NAVEHPDVEIVAVNDPFIETKYAAYMLKYDSTHGIFNGEIAQDGND-LVINGKKVKFYTERDPAVIPWKETG 91          
BLAST of EY665449 vs. ExPASy Swiss-Prot
Match: G3P2_KLULA (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Kluyveromyces lactis GN=GAP2 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.887e-11
Identity = 41/88 (46.59%), Postives = 54/88 (61.36%), Query Frame = 1
Query:  202 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWG 462
            ++VAINGFGRIGR  LR    R +  +EVVAIND    V  A+++ KYDST G F  +V     + + +DGK + V   R+P  LPWG
Sbjct:    2 VRVAINGFGRIGRLVLRIALSRPN--VEVVAINDPFISVDYAAYMFKYDSTHGRFAGEVSH-DENSLIIDGKKVLVFQERDPATLPWG 86          
The following BLAST results are available for this feature:
BLAST of EY665449 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 147
Match NameE-valueIdentityDescription
G3P_HELPJ5.996e-1144.26Glyceraldehyde-3-phosphate dehydrogenase OS=Helico... [more]
G3P_HELPY5.996e-1142.62Glyceraldehyde-3-phosphate dehydrogenase OS=Helico... [more]
G3P_KLEPN6.805e-1145.35Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
G3PA_SINAL6.805e-1154.35Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3P_MYCPN8.887e-1143.01Glyceraldehyde-3-phosphate dehydrogenase OS=Mycopl... [more]
G3P_COLLN8.887e-1140.86Glyceraldehyde-3-phosphate dehydrogenase OS=Collet... [more]
G3P2_KLULA8.887e-1146.59Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Kluy... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-102-002-C01-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665449 ID=EY665449; Name=EY665449; organism=Citrus sinensis; type=EST; length=850bp
GCTTCGGCCACTCTCTCTGTATCCAAATCAGCTCTTCAGGGAAATGGTAA
GGGATTCTCACAATTCTCAGGTCTACGCAACTCTGCAAGCCTTCCTTTTG
GCAGGAAATCTTCTGATGACTTCCATTCAGTCATTGCTCTCCAGACCTCT
GCTTTAGGAAGCAGCAGCAGCGGGTACAGGAAGGTTGCTGCTCAGGCAAA
GCTGAAGGTTGCAATCAATGGGTTTGGTAGAATTGGTAGGAACTTCTTGA
GGTGCTGGCACGGCCGCAAGGACTCTCCACTTGAAGTCGTTGCCATCAAT
GACACCGGAGGTGTCAAGCAGGCCTCTCACCTCCTCAAGTACGACTCCAC
CCTTGGCATCTTTGAAGCCGATGTTAAACCAGTTGGTACTGATGGCATCT
CTGTTGATGGCAAGGTCATCCAGGTTGTTTCTAACCGCAACCCCGTCAAT
CTCCCCTGGGGGGGACTTGGGCATCGACCTTGTGATTGAAGGGACAGGAG
TGTTTGTAGAAAGAGAGGGTGCGGGCAAGCACATTCAGGCTGGTGCCAAG
AAAGTACTTATTACAGCCCCCCGGAAAGGGTGACATCCCAACCCTACCGT
TGTTGGGGGTCCAATGCGGAATGCTTTACAAGCCAGATGAACCCCATCAT
CAGAAATGCTTCTTGGCACAACCAACTGCCTTGCCCCCTTTCTTCAAGGG
TCTTGGACCAAAAGCTTTGGCATTATTCAGGGAAACCCTGACCACCCACA
CCCCTCCTACACTTGGGGGAACCAAAGGTTACTCCCAAGCTAACCCACCG
GGAACCTAGGGGGAAAAAAAAAAAGCTGCAATCCAAATGTGCCCCAAAAT
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