EY665449

Overview
NameEY665449
Unique NameEY665449
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length850
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY665449_ssr160 microsatellite EY665449_ssr160:160..171. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY665449 vs. ExPASy Swiss-Prot
Match: G3P_CHLTR (Glyceraldehyde-3-phosphate dehydrogenase OS=Chlamydia trachomatis GN=gap PE=3 SV=3)

HSP 1 Score: 63.1586 bits (152), Expect = 6.158e-20
Identity = 41/96 (42.71%), Postives = 54/96 (56.25%), Query Frame = 2
Query:  455 PGGDLGIDLVIEGTGVFVEREGAGKHIQAGAKKVLITAPRKG*HPNPTVVGGPMRNALQAR*TPSSEMLLG---TTNCLAPFLQGSWTKSFGIIQG 733
            P  DL +D+V+E TG+FV R+   KH+ +GAK+VLITAP KG    PT V G           P+  ++     TTNCLAP L      +FGI +G
Sbjct:   83 PWKDLDVDVVVESTGLFVNRDDVAKHLDSGAKRVLITAPAKG--DVPTFVMGVNHQQFD----PADVIISNASCTTNCLAP-LAKVLLDNFGIEEG 171          

HSP 2 Score: 55.8398 bits (133), Expect = 6.158e-20
Identity = 36/90 (40.00%), Postives = 53/90 (58.89%), Query Frame = 1
Query:  202 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDG-KVIQVVSNRNPVNLPWGGL 468
            +++ INGFGRIGR  LR    +++SP+EVVAIND       ++L KYDST G F    +   +DG  V G + +  ++ ++   LPW  L
Sbjct:    1 MRIVINGFGRIGRLVLRQIL-KRNSPIEVVAINDLVAGDLLTYLFKYDSTHGSFAP--QATFSDGCLVMGERKVHFLAEKDVQKLPWKDL 87          
BLAST of EY665449 vs. ExPASy Swiss-Prot
Match: E4PD_TOLAT (D-erythrose-4-phosphate dehydrogenase OS=Tolumonas auensis (strain DSM 9187 / TA4) GN=epd PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.005e-20
Identity = 41/92 (44.57%), Postives = 58/92 (63.04%), Query Frame = 1
Query:  202 LKVAINGFGRIGRNFLRCWH--GRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGGLG 471
            +++AINGFGRIGRN LR  +  GR+ + ++VVAIN+       +HLLKYDST G F+ DV+    D + V    I+++  +    LPWG LG
Sbjct:    3 IRIAINGFGRIGRNVLRALYESGRR-AEIKVVAINEPADAAGMAHLLKYDSTHGRFDWDVRQ-ERDVLYVGDDAIRLLHQKEISQLPWGDLG 92          

HSP 2 Score: 48.1358 bits (113), Expect = 8.005e-20
Identity = 30/83 (36.14%), Postives = 46/83 (55.42%), Query Frame = 2
Query:  455 PGGDLGIDLVIEGTGVFVEREGAGKHIQAGAKKVLITAPRKG*HPNPTVVGGPMRNALQA--R*TPSSEMLLGTTNCLAPFLQ 697
            P GDLG+D+V++ +GV+ +R     H+ +GAKKVL + P      + TV+ G     LQ+  R   S      TTNC+ P ++
Sbjct:   87 PWGDLGVDIVLDCSGVYGKRADGEMHLASGAKKVLFSHPGSS-DLDATVIYGVNHQQLQSEHRIVSSGSC---TTNCIIPIIK 165          
BLAST of EY665449 vs. ExPASy Swiss-Prot
Match: E4PD_YERE8 (D-erythrose-4-phosphate dehydrogenase OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=epd PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 1.354e-19
Identity = 39/92 (42.39%), Postives = 57/92 (61.96%), Query Frame = 1
Query:  202 LKVAINGFGRIGRNFLRCWH--GRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGGLG 471
            +++AINGFGRIGR+ LR  +  GR+ + + VVAIN+    +  +HLLKYDS+ G F  DV+    D + V   +I+++       LPWG LG
Sbjct:    3 IRIAINGFGRIGRSVLRALYESGRR-AEISVVAINELANAEGMAHLLKYDSSHGRFAWDVRQ-ECDKLYVGDDIIRLIHQPEIEQLPWGELG 92          

HSP 2 Score: 50.8322 bits (120), Expect = 1.354e-19
Identity = 39/101 (38.61%), Postives = 51/101 (50.50%), Query Frame = 2
Query:  455 PGGDLGIDLVIEGTGVFVEREGAGKHIQAGAKKVLITAPRKG*HPNPTVVGGPMRNALQAR*TPSSEMLLGTTNCLAPFLQGSWTKSFGIIQGNPDHPHPS 757
            P G+LGID+V++ +GV+  R     H+ +GAKKVL   P  G   + TVV G     LQA     S     TTNC+ P +Q     +FGI  G     H S
Sbjct:   87 PWGELGIDVVLDCSGVYGSRADGEAHLTSGAKKVLFAHP-GGHDLDATVVYGVNHQDLQADHRIVSNASC-TTNCIIPIIQ-LLDVAFGIESGTVTTIHSS 184          
BLAST of EY665449 vs. ExPASy Swiss-Prot
Match: G3P_STRPY (Glyceraldehyde-3-phosphate dehydrogenase OS=Streptococcus pyogenes GN=gap PE=1 SV=2)

HSP 1 Score: 62.3882 bits (150), Expect = 3.875e-19
Identity = 37/86 (43.02%), Postives = 49/86 (56.98%), Query Frame = 1
Query:  202 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPW 459
            +KV INGFGRIGR   R    +    +EV  IND       +HLLKYD+T G F+  V+ V   G  V+G  I+V + R+P N+ W
Sbjct:    3 VKVGINGFGRIGRLAFR--RIQNIEGVEVTRINDLTDPNMLAHLLKYDTTQGRFDGTVE-VKEGGFEVNGNFIKVSAERDPENIDW 85          

HSP 2 Score: 53.9138 bits (128), Expect = 3.875e-19
Identity = 44/106 (41.51%), Postives = 61/106 (57.55%), Query Frame = 2
Query:  470 GIDLVIEGTGVFVEREGAGKHIQA-GAKKVLITAPRKG*HPNPTVVGGPMRNALQAR*TPSSEMLLGTTNCLAPFLQGSWTKSFGIIQGNPDHPHPSYTWGNQRLL 784
            G+++V+E TG F ++E A KH+ A GAKKV+ITAP  G +   TVV     + L    T  S     TTNCLAP  + +   +FGI +G     H +YT G+Q +L
Sbjct:   89 GVEIVLEATGFFAKKEAAEKHLHANGAKKVVITAP--GGNDVKTVVFNTNHDILDGTETVISGASC-TTNCLAPMAK-ALHDAFGIQKGLMTTIH-AYT-GDQMIL 188          
BLAST of EY665449 vs. ExPASy Swiss-Prot
Match: G3P_STRP8 (Glyceraldehyde-3-phosphate dehydrogenase OS=Streptococcus pyogenes serotype M18 GN=gap PE=3 SV=2)

HSP 1 Score: 62.3882 bits (150), Expect = 3.875e-19
Identity = 37/86 (43.02%), Postives = 49/86 (56.98%), Query Frame = 1
Query:  202 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPW 459
            +KV INGFGRIGR   R    +    +EV  IND       +HLLKYD+T G F+  V+ V   G  V+G  I+V + R+P N+ W
Sbjct:    3 VKVGINGFGRIGRLAFR--RIQNIEGVEVTRINDLTDPNMLAHLLKYDTTQGRFDGTVE-VKEGGFEVNGNFIKVSAERDPENIDW 85          

HSP 2 Score: 53.9138 bits (128), Expect = 3.875e-19
Identity = 44/106 (41.51%), Postives = 61/106 (57.55%), Query Frame = 2
Query:  470 GIDLVIEGTGVFVEREGAGKHIQA-GAKKVLITAPRKG*HPNPTVVGGPMRNALQAR*TPSSEMLLGTTNCLAPFLQGSWTKSFGIIQGNPDHPHPSYTWGNQRLL 784
            G+++V+E TG F ++E A KH+ A GAKKV+ITAP  G +   TVV     + L    T  S     TTNCLAP  + +   +FGI +G     H +YT G+Q +L
Sbjct:   89 GVEIVLEATGFFAKKEAAEKHLHANGAKKVVITAP--GGNDVKTVVFNTNHDILDGTETVISGASC-TTNCLAPMAK-ALHDAFGIQKGLMTTIH-AYT-GDQMIL 188          
BLAST of EY665449 vs. ExPASy Swiss-Prot
Match: G3P_STRP6 (Glyceraldehyde-3-phosphate dehydrogenase OS=Streptococcus pyogenes serotype M6 GN=gap PE=1 SV=3)

HSP 1 Score: 62.3882 bits (150), Expect = 3.875e-19
Identity = 37/86 (43.02%), Postives = 49/86 (56.98%), Query Frame = 1
Query:  202 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPW 459
            +KV INGFGRIGR   R    +    +EV  IND       +HLLKYD+T G F+  V+ V   G  V+G  I+V + R+P N+ W
Sbjct:    3 VKVGINGFGRIGRLAFR--RIQNIEGVEVTRINDLTDPNMLAHLLKYDTTQGRFDGTVE-VKEGGFEVNGNFIKVSAERDPENIDW 85          

HSP 2 Score: 53.9138 bits (128), Expect = 3.875e-19
Identity = 44/106 (41.51%), Postives = 61/106 (57.55%), Query Frame = 2
Query:  470 GIDLVIEGTGVFVEREGAGKHIQA-GAKKVLITAPRKG*HPNPTVVGGPMRNALQAR*TPSSEMLLGTTNCLAPFLQGSWTKSFGIIQGNPDHPHPSYTWGNQRLL 784
            G+++V+E TG F ++E A KH+ A GAKKV+ITAP  G +   TVV     + L    T  S     TTNCLAP  + +   +FGI +G     H +YT G+Q +L
Sbjct:   89 GVEIVLEATGFFAKKEAAEKHLHANGAKKVVITAP--GGNDVKTVVFNTNHDILDGTETVISGASC-TTNCLAPMAK-ALHDAFGIQKGLMTTIH-AYT-GDQMIL 188          
BLAST of EY665449 vs. ExPASy Swiss-Prot
Match: G3P_STRP1 (Glyceraldehyde-3-phosphate dehydrogenase OS=Streptococcus pyogenes serotype M1 GN=gap PE=3 SV=2)

HSP 1 Score: 62.3882 bits (150), Expect = 3.875e-19
Identity = 37/86 (43.02%), Postives = 49/86 (56.98%), Query Frame = 1
Query:  202 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPW 459
            +KV INGFGRIGR   R    +    +EV  IND       +HLLKYD+T G F+  V+ V   G  V+G  I+V + R+P N+ W
Sbjct:    3 VKVGINGFGRIGRLAFR--RIQNIEGVEVTRINDLTDPNMLAHLLKYDTTQGRFDGTVE-VKEGGFEVNGNFIKVSAERDPENIDW 85          

HSP 2 Score: 53.9138 bits (128), Expect = 3.875e-19
Identity = 44/106 (41.51%), Postives = 61/106 (57.55%), Query Frame = 2
Query:  470 GIDLVIEGTGVFVEREGAGKHIQA-GAKKVLITAPRKG*HPNPTVVGGPMRNALQAR*TPSSEMLLGTTNCLAPFLQGSWTKSFGIIQGNPDHPHPSYTWGNQRLL 784
            G+++V+E TG F ++E A KH+ A GAKKV+ITAP  G +   TVV     + L    T  S     TTNCLAP  + +   +FGI +G     H +YT G+Q +L
Sbjct:   89 GVEIVLEATGFFAKKEAAEKHLHANGAKKVVITAP--GGNDVKTVVFNTNHDILDGTETVISGASC-TTNCLAPMAK-ALHDAFGIQKGLMTTIH-AYT-GDQMIL 188          
BLAST of EY665449 vs. ExPASy Swiss-Prot
Match: E4PD_SHESR (D-erythrose-4-phosphate dehydrogenase OS=Shewanella sp. (strain MR-7) GN=epd PE=3 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 6.551e-19
Identity = 34/87 (39.08%), Postives = 53/87 (60.92%), Query Frame = 1
Query:  202 LKVAINGFGRIGRNFLRC-WHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPW 459
            ++VAING+GRIGR+ LR  +   K   +++VAIN+    +   HL +YD+T G F+  VK V  D + +   VI+++   +P  LPW
Sbjct:    2 IRVAINGYGRIGRSILRALYESGKRQQIQIVAINELAKPEAIVHLTQYDTTHGRFQPRVKLV-DDQMLIGDDVIKILHEPDPAKLPW 87          

HSP 2 Score: 52.373 bits (124), Expect = 6.551e-19
Identity = 35/97 (36.08%), Postives = 51/97 (52.58%), Query Frame = 2
Query:  443 PSISPGGDLGIDLVIEGTGVFVEREGAGKHIQAGAKKVLITAPRKG*HPNPTVVGGPMRNALQAR*TPSSEMLLGTTNCLAPFLQGSWTKSFGIIQG 733
            P+  P  ++ ID+V E TG  ++R     HI AGAK+VLI+ P      + T+V G  ++ L+A  T  S     TTNC+ P +     K FG+  G
Sbjct:   82 PAKLPWREMDIDIVYEATGAILDRNSCEAHIHAGAKQVLISHPSSA-DVDGTIVYGVNQDLLRAEHTVVSNASC-TTNCIVPVID-VLDKHFGVKSG 175          
BLAST of EY665449 vs. ExPASy Swiss-Prot
Match: E4PD_SHESM (D-erythrose-4-phosphate dehydrogenase OS=Shewanella sp. (strain MR-4) GN=epd PE=3 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 6.551e-19
Identity = 34/87 (39.08%), Postives = 53/87 (60.92%), Query Frame = 1
Query:  202 LKVAINGFGRIGRNFLRC-WHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPW 459
            ++VAING+GRIGR+ LR  +   K   +++VAIN+    +   HL +YD+T G F+  VK V  D + +   VI+++   +P  LPW
Sbjct:    2 IRVAINGYGRIGRSILRALYESGKRQQIQIVAINELAKPEAIVHLTQYDTTHGRFQPRVKLV-DDQMLIGDDVIKILHEPDPAKLPW 87          

HSP 2 Score: 52.373 bits (124), Expect = 6.551e-19
Identity = 35/97 (36.08%), Postives = 51/97 (52.58%), Query Frame = 2
Query:  443 PSISPGGDLGIDLVIEGTGVFVEREGAGKHIQAGAKKVLITAPRKG*HPNPTVVGGPMRNALQAR*TPSSEMLLGTTNCLAPFLQGSWTKSFGIIQG 733
            P+  P  ++ ID+V E TG  ++R     HI AGAK+VLI+ P      + T+V G  ++ L+A  T  S     TTNC+ P +     K FG+  G
Sbjct:   82 PAKLPWHEMDIDIVYEATGAILDRNSCEAHIHAGAKQVLISHPSSA-DVDGTIVYGVNQDLLRAEHTVVSNASC-TTNCIVPVID-VLDKHFGVKSG 175          
BLAST of EY665449 vs. ExPASy Swiss-Prot
Match: E4PD_YERPS (D-erythrose-4-phosphate dehydrogenase OS=Yersinia pseudotuberculosis GN=epd PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 1.108e-18
Identity = 38/92 (41.30%), Postives = 56/92 (60.87%), Query Frame = 1
Query:  202 LKVAINGFGRIGRNFLRCWH--GRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGGLG 471
            +++AINGFGRIGR+ LR  +  GR+ + + VVAIN+    +  +HLLKYDS+ G F  DV+    D + V   +I+++       LPW  LG
Sbjct:    3 IRIAINGFGRIGRSVLRALYESGRR-AEISVVAINELASAEGMAHLLKYDSSHGRFAWDVRQ-ECDSLYVGDDIIRLIHQSEIEQLPWSELG 92          

HSP 2 Score: 48.9062 bits (115), Expect = 1.108e-18
Identity = 32/81 (39.51%), Postives = 44/81 (54.32%), Query Frame = 2
Query:  455 PGGDLGIDLVIEGTGVFVEREGAGKHIQAGAKKVLITAPRKG*HPNPTVVGGPMRNALQAR*TPSSEMLLGTTNCLAPFLQ 697
            P  +LGID+V++ +GV+  RE    H+ +GAKKVL   P  G   + TVV G     L+A     S     TTNC+ P +Q
Sbjct:   87 PWSELGIDVVLDCSGVYGSREDGEAHVASGAKKVLFAHP-GGHDLDATVVYGVNHQDLRAEHRIVSNASC-TTNCIIPIIQ 165          
The following BLAST results are available for this feature:
BLAST of EY665449 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 147
Match NameE-valueIdentityDescription
G3P_CHLTR6.158e-2042.71Glyceraldehyde-3-phosphate dehydrogenase OS=Chlamy... [more]
E4PD_TOLAT8.005e-2044.57D-erythrose-4-phosphate dehydrogenase OS=Tolumonas... [more]
E4PD_YERE81.354e-1942.39D-erythrose-4-phosphate dehydrogenase OS=Yersinia ... [more]
G3P_STRPY3.875e-1943.02Glyceraldehyde-3-phosphate dehydrogenase OS=Strept... [more]
G3P_STRP83.875e-1943.02Glyceraldehyde-3-phosphate dehydrogenase OS=Strept... [more]
G3P_STRP63.875e-1943.02Glyceraldehyde-3-phosphate dehydrogenase OS=Strept... [more]
G3P_STRP13.875e-1943.02Glyceraldehyde-3-phosphate dehydrogenase OS=Strept... [more]
E4PD_SHESR6.551e-1939.08D-erythrose-4-phosphate dehydrogenase OS=Shewanell... [more]
E4PD_SHESM6.551e-1939.08D-erythrose-4-phosphate dehydrogenase OS=Shewanell... [more]
E4PD_YERPS1.108e-1841.30D-erythrose-4-phosphate dehydrogenase OS=Yersinia ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-102-002-C01-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665449 ID=EY665449; Name=EY665449; organism=Citrus sinensis; type=EST; length=850bp
GCTTCGGCCACTCTCTCTGTATCCAAATCAGCTCTTCAGGGAAATGGTAA
GGGATTCTCACAATTCTCAGGTCTACGCAACTCTGCAAGCCTTCCTTTTG
GCAGGAAATCTTCTGATGACTTCCATTCAGTCATTGCTCTCCAGACCTCT
GCTTTAGGAAGCAGCAGCAGCGGGTACAGGAAGGTTGCTGCTCAGGCAAA
GCTGAAGGTTGCAATCAATGGGTTTGGTAGAATTGGTAGGAACTTCTTGA
GGTGCTGGCACGGCCGCAAGGACTCTCCACTTGAAGTCGTTGCCATCAAT
GACACCGGAGGTGTCAAGCAGGCCTCTCACCTCCTCAAGTACGACTCCAC
CCTTGGCATCTTTGAAGCCGATGTTAAACCAGTTGGTACTGATGGCATCT
CTGTTGATGGCAAGGTCATCCAGGTTGTTTCTAACCGCAACCCCGTCAAT
CTCCCCTGGGGGGGACTTGGGCATCGACCTTGTGATTGAAGGGACAGGAG
TGTTTGTAGAAAGAGAGGGTGCGGGCAAGCACATTCAGGCTGGTGCCAAG
AAAGTACTTATTACAGCCCCCCGGAAAGGGTGACATCCCAACCCTACCGT
TGTTGGGGGTCCAATGCGGAATGCTTTACAAGCCAGATGAACCCCATCAT
CAGAAATGCTTCTTGGCACAACCAACTGCCTTGCCCCCTTTCTTCAAGGG
TCTTGGACCAAAAGCTTTGGCATTATTCAGGGAAACCCTGACCACCCACA
CCCCTCCTACACTTGGGGGAACCAAAGGTTACTCCCAAGCTAACCCACCG
GGAACCTAGGGGGAAAAAAAAAAAGCTGCAATCCAAATGTGCCCCAAAAT
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