EY665449

Overview
NameEY665449
Unique NameEY665449
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length850
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY665449_ssr160 microsatellite EY665449_ssr160:160..171. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY665449 vs. ExPASy Swiss-Prot
Match: E4PD_YERPN (D-erythrose-4-phosphate dehydrogenase OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=epd PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 1.108e-18
Identity = 38/92 (41.30%), Postives = 56/92 (60.87%), Query Frame = 1 
Query:  202 LKVAINGFGRIGRNFLRCWH--GRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGGLG 471
            +++AINGFGRIGR+ LR  +  GR+ + + VVAIN+    +  +HLLKYDS+ G F  DV+    D + V   +I+++       LPW  LG
Sbjct:    3 IRIAINGFGRIGRSVLRALYESGRR-AEISVVAINELASAEGMAHLLKYDSSHGRFAWDVRQ-ECDSLYVGDDIIRLIHQSEIEQLPWSELG 92

HSP 2 Score: 48.9062 bits (115), Expect = 1.108e-18
Identity = 32/81 (39.51%), Postives = 44/81 (54.32%), Query Frame = 2 
Query:  455 PGGDLGIDLVIEGTGVFVEREGAGKHIQAGAKKVLITAPRKG*HPNPTVVGGPMRNALQAR*TPSSEMLLGTTNCLAPFLQ 697
            P  +LGID+V++ +GV+  RE    H+ +GAKKVL   P  G   + TVV G     L+A     S     TTNC+ P +Q
Sbjct:   87 PWSELGIDVVLDCSGVYGSREDGEAHVASGAKKVLFAHP-GGHDLDATVVYGVNHQDLRAEHRIVSNASC-TTNCIIPIIQ 165
[Close]
BLAST of EY665449 vs. ExPASy Swiss-Prot
Match: E4PD_YERPE (D-erythrose-4-phosphate dehydrogenase OS=Yersinia pestis GN=epd PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 1.108e-18
Identity = 38/92 (41.30%), Postives = 56/92 (60.87%), Query Frame = 1 
Query:  202 LKVAINGFGRIGRNFLRCWH--GRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGGLG 471
            +++AINGFGRIGR+ LR  +  GR+ + + VVAIN+    +  +HLLKYDS+ G F  DV+    D + V   +I+++       LPW  LG
Sbjct:    3 IRIAINGFGRIGRSVLRALYESGRR-AEISVVAINELASAEGMAHLLKYDSSHGRFAWDVRQ-ECDSLYVGDDIIRLIHQSEIEQLPWSELG 92

HSP 2 Score: 48.9062 bits (115), Expect = 1.108e-18
Identity = 32/81 (39.51%), Postives = 44/81 (54.32%), Query Frame = 2 
Query:  455 PGGDLGIDLVIEGTGVFVEREGAGKHIQAGAKKVLITAPRKG*HPNPTVVGGPMRNALQAR*TPSSEMLLGTTNCLAPFLQ 697
            P  +LGID+V++ +GV+  RE    H+ +GAKKVL   P  G   + TVV G     L+A     S     TTNC+ P +Q
Sbjct:   87 PWSELGIDVVLDCSGVYGSREDGEAHVASGAKKVLFAHP-GGHDLDATVVYGVNHQDLRAEHRIVSNASC-TTNCIIPIIQ 165
[Close]
BLAST of EY665449 vs. ExPASy Swiss-Prot
Match: E4PD_YERPA (D-erythrose-4-phosphate dehydrogenase OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=epd PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 1.108e-18
Identity = 38/92 (41.30%), Postives = 56/92 (60.87%), Query Frame = 1 
Query:  202 LKVAINGFGRIGRNFLRCWH--GRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGGLG 471
            +++AINGFGRIGR+ LR  +  GR+ + + VVAIN+    +  +HLLKYDS+ G F  DV+    D + V   +I+++       LPW  LG
Sbjct:    3 IRIAINGFGRIGRSVLRALYESGRR-AEISVVAINELASAEGMAHLLKYDSSHGRFAWDVRQ-ECDSLYVGDDIIRLIHQSEIEQLPWSELG 92

HSP 2 Score: 48.9062 bits (115), Expect = 1.108e-18
Identity = 32/81 (39.51%), Postives = 44/81 (54.32%), Query Frame = 2 
Query:  455 PGGDLGIDLVIEGTGVFVEREGAGKHIQAGAKKVLITAPRKG*HPNPTVVGGPMRNALQAR*TPSSEMLLGTTNCLAPFLQ 697
            P  +LGID+V++ +GV+  RE    H+ +GAKKVL   P  G   + TVV G     L+A     S     TTNC+ P +Q
Sbjct:   87 PWSELGIDVVLDCSGVYGSREDGEAHVASGAKKVLFAHP-GGHDLDATVVYGVNHQDLRAEHRIVSNASC-TTNCIIPIIQ 165
[Close]
BLAST of EY665449 vs. ExPASy Swiss-Prot
Match: E4PD_SHESA (D-erythrose-4-phosphate dehydrogenase OS=Shewanella sp. (strain ANA-3) GN=epd PE=3 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 1.108e-18
Identity = 34/87 (39.08%), Postives = 53/87 (60.92%), Query Frame = 1 
Query:  202 LKVAINGFGRIGRNFLRC-WHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPW 459
            ++VAING+GRIGR+ LR  +   K   +++VAIN+    +   HL +YD+T G F+  VK V  D + +   VI+++   +P  LPW
Sbjct:    2 IRVAINGYGRIGRSILRALYESGKRQQIQIVAINELAKPEAIIHLTQYDTTHGRFQPRVKLV-DDQMLIGDDVIKILHEPDPAKLPW 87

HSP 2 Score: 51.6026 bits (122), Expect = 1.108e-18
Identity = 35/97 (36.08%), Postives = 51/97 (52.58%), Query Frame = 2 
Query:  443 PSISPGGDLGIDLVIEGTGVFVEREGAGKHIQAGAKKVLITAPRKG*HPNPTVVGGPMRNALQAR*TPSSEMLLGTTNCLAPFLQGSWTKSFGIIQG 733
            P+  P  ++ ID+V E TG  ++R     HI AGAK+VLI+ P      + T+V G  ++ L+A  T  S     TTNC+ P +     K FG+  G
Sbjct:   82 PAKLPWREMDIDIVYEATGAILDRNSCEAHILAGAKQVLISHPSSA-DVDGTIVYGVNQDLLRAEHTVVSNASC-TTNCIVPVID-VLDKHFGVKSG 175
[Close]
BLAST of EY665449 vs. ExPASy Swiss-Prot
Match: G3P_STRP3 (Glyceraldehyde-3-phosphate dehydrogenase OS=Streptococcus pyogenes serotype M3 GN=gap PE=3 SV=3)

HSP 1 Score: 62.3882 bits (150), Expect = 1.108e-18
Identity = 37/86 (43.02%), Postives = 49/86 (56.98%), Query Frame = 1 
Query:  202 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPW 459
            +KV INGFGRIGR   R    +    +EV  IND       +HLLKYD+T G F+  V+ V   G  V+G  I+V + R+P N+ W
Sbjct:    3 VKVGINGFGRIGRLAFR--RIQNIEGVEVTRINDLTDPNMLAHLLKYDTTQGRFDGTVE-VKEGGFEVNGNFIKVSAERDPENIDW 85

HSP 2 Score: 52.373 bits (124), Expect = 1.108e-18
Identity = 43/106 (40.57%), Postives = 60/106 (56.60%), Query Frame = 2 
Query:  470 GIDLVIEGTGVFVEREGAGKHIQA-GAKKVLITAPRKG*HPNPTVVGGPMRNALQAR*TPSSEMLLGTTNCLAPFLQGSWTKSFGIIQGNPDHPHPSYTWGNQRLL 784
            G+++V+E TG F ++E A KH+   GAKKV+ITAP  G +   TVV     + L    T  S     TTNCLAP  + +   +FGI +G     H +YT G+Q +L
Sbjct:   89 GVEIVLEATGFFAKKEAAEKHLHTNGAKKVVITAP--GGNDVKTVVFNTNHDILDGTETVISGASC-TTNCLAPMAK-ALHDAFGIQKGLMTTIH-AYT-GDQMIL 188
[Close]
BLAST of EY665449 vs. ExPASy Swiss-Prot
Match: G3P1_STAAW (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Staphylococcus aureus (strain MW2) GN=gapA1 PE=3 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 1.108e-18
Identity = 39/89 (43.82%), Postives = 51/89 (57.30%), Query Frame = 1 
Query:  202 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGGL 468
            +KVAINGFGRIGR   R    ++   LEVVA+ND       +HLLKYD+  G F  +V+ V   G  V+GK ++  S  +   LPW  L
Sbjct:    3 VKVAINGFGRIGRLAFR--RIQEVEGLEVVAVNDLTDDDMLAHLLKYDTMQGRFTGEVEVV-DGGFRVNGKEVKSFSEPDASKLPWKDL 88

HSP 2 Score: 53.1434 bits (126), Expect = 1.108e-18
Identity = 37/93 (39.78%), Postives = 50/93 (53.76%), Query Frame = 2 
Query:  455 PGGDLGIDLVIEGTGVFVEREGAGKHIQAGAKKVLITAPRKG*HPNPTVVGGPMRNALQAR*TPSSEMLLGTTNCLAPFLQGSWTKSFGIIQG 733
            P  DL ID+V+E TG + +++ A  HI+AGAKKVLI+AP  G     T+V       L    T  S     TTN LAP  +      FG+++G
Sbjct:   84 PWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLISAPATG--DLKTIVFNTNHQELDGSETVVSGASC-TTNSLAPVAK-VLNDDFGLVEG 172
[Close]
BLAST of EY665449 vs. ExPASy Swiss-Prot
Match: G3P1_STAAU (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Staphylococcus aureus GN=gapA1 PE=3 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 1.108e-18
Identity = 39/89 (43.82%), Postives = 51/89 (57.30%), Query Frame = 1 
Query:  202 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGGL 468
            +KVAINGFGRIGR   R    ++   LEVVA+ND       +HLLKYD+  G F  +V+ V   G  V+GK ++  S  +   LPW  L
Sbjct:    3 VKVAINGFGRIGRLAFR--RIQEVEGLEVVAVNDLTDDDMLAHLLKYDTMQGRFTGEVEVV-DGGFRVNGKEVKSFSEPDASKLPWKDL 88

HSP 2 Score: 53.1434 bits (126), Expect = 1.108e-18
Identity = 37/93 (39.78%), Postives = 50/93 (53.76%), Query Frame = 2 
Query:  455 PGGDLGIDLVIEGTGVFVEREGAGKHIQAGAKKVLITAPRKG*HPNPTVVGGPMRNALQAR*TPSSEMLLGTTNCLAPFLQGSWTKSFGIIQG 733
            P  DL ID+V+E TG + +++ A  HI+AGAKKVLI+AP  G     T+V       L    T  S     TTN LAP  +      FG+++G
Sbjct:   84 PWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLISAPATG--DLKTIVFNTNHQELDGSETVVSGASC-TTNSLAPVAK-VLNDDFGLVEG 172
[Close]
BLAST of EY665449 vs. ExPASy Swiss-Prot
Match: G3P1_STAAS (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Staphylococcus aureus (strain MSSA476) GN=gapA1 PE=3 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 1.108e-18
Identity = 39/89 (43.82%), Postives = 51/89 (57.30%), Query Frame = 1 
Query:  202 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGGL 468
            +KVAINGFGRIGR   R    ++   LEVVA+ND       +HLLKYD+  G F  +V+ V   G  V+GK ++  S  +   LPW  L
Sbjct:    3 VKVAINGFGRIGRLAFR--RIQEVEGLEVVAVNDLTDDDMLAHLLKYDTMQGRFTGEVEVV-DGGFRVNGKEVKSFSEPDASKLPWKDL 88

HSP 2 Score: 53.1434 bits (126), Expect = 1.108e-18
Identity = 37/93 (39.78%), Postives = 50/93 (53.76%), Query Frame = 2 
Query:  455 PGGDLGIDLVIEGTGVFVEREGAGKHIQAGAKKVLITAPRKG*HPNPTVVGGPMRNALQAR*TPSSEMLLGTTNCLAPFLQGSWTKSFGIIQG 733
            P  DL ID+V+E TG + +++ A  HI+AGAKKVLI+AP  G     T+V       L    T  S     TTN LAP  +      FG+++G
Sbjct:   84 PWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLISAPATG--DLKTIVFNTNHQELDGSETVVSGASC-TTNSLAPVAK-VLNDDFGLVEG 172
[Close]
BLAST of EY665449 vs. ExPASy Swiss-Prot
Match: G3P1_STAAR (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Staphylococcus aureus (strain MRSA252) GN=gapA1 PE=3 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 1.108e-18
Identity = 39/89 (43.82%), Postives = 51/89 (57.30%), Query Frame = 1 
Query:  202 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGGL 468
            +KVAINGFGRIGR   R    ++   LEVVA+ND       +HLLKYD+  G F  +V+ V   G  V+GK ++  S  +   LPW  L
Sbjct:    3 VKVAINGFGRIGRLAFR--RIQEVEGLEVVAVNDLTDDDMLAHLLKYDTMQGRFTGEVEVV-DGGFRVNGKEVKSFSEPDASKLPWKDL 88

HSP 2 Score: 53.1434 bits (126), Expect = 1.108e-18
Identity = 37/93 (39.78%), Postives = 50/93 (53.76%), Query Frame = 2 
Query:  455 PGGDLGIDLVIEGTGVFVEREGAGKHIQAGAKKVLITAPRKG*HPNPTVVGGPMRNALQAR*TPSSEMLLGTTNCLAPFLQGSWTKSFGIIQG 733
            P  DL ID+V+E TG + +++ A  HI+AGAKKVLI+AP  G     T+V       L    T  S     TTN LAP  +      FG+++G
Sbjct:   84 PWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLISAPATG--DLKTIVFNTNHQELDGSETVVSGASC-TTNSLAPVAK-VLNDDFGLVEG 172
[Close]
BLAST of EY665449 vs. ExPASy Swiss-Prot
Match: G3P1_STAAN (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Staphylococcus aureus (strain N315) GN=gapA1 PE=1 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 1.108e-18
Identity = 39/89 (43.82%), Postives = 51/89 (57.30%), Query Frame = 1 
Query:  202 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGGL 468
            +KVAINGFGRIGR   R    ++   LEVVA+ND       +HLLKYD+  G F  +V+ V   G  V+GK ++  S  +   LPW  L
Sbjct:    3 VKVAINGFGRIGRLAFR--RIQEVEGLEVVAVNDLTDDDMLAHLLKYDTMQGRFTGEVEVV-DGGFRVNGKEVKSFSEPDASKLPWKDL 88

HSP 2 Score: 53.1434 bits (126), Expect = 1.108e-18
Identity = 37/93 (39.78%), Postives = 50/93 (53.76%), Query Frame = 2 
Query:  455 PGGDLGIDLVIEGTGVFVEREGAGKHIQAGAKKVLITAPRKG*HPNPTVVGGPMRNALQAR*TPSSEMLLGTTNCLAPFLQGSWTKSFGIIQG 733
            P  DL ID+V+E TG + +++ A  HI+AGAKKVLI+AP  G     T+V       L    T  S     TTN LAP  +      FG+++G
Sbjct:   84 PWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLISAPATG--DLKTIVFNTNHQELDGSETVVSGASC-TTNSLAPVAK-VLNDDFGLVEG 172
The following BLAST results are available for this feature:
BLAST of EY665449 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 147
Match NameE-valueIdentityDescription
E4PD_YERPN1.108e-1841.30D-erythrose-4-phosphate dehydrogenase OS=Yersinia ... [more]
E4PD_YERPE1.108e-1841.30D-erythrose-4-phosphate dehydrogenase OS=Yersinia ... [more]
E4PD_YERPA1.108e-1841.30D-erythrose-4-phosphate dehydrogenase OS=Yersinia ... [more]
E4PD_SHESA1.108e-1839.08D-erythrose-4-phosphate dehydrogenase OS=Shewanell... [more]
G3P_STRP31.108e-1843.02Glyceraldehyde-3-phosphate dehydrogenase OS=Strept... [more]
G3P1_STAAW1.108e-1843.82Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Stap... [more]
G3P1_STAAU1.108e-1843.82Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Stap... [more]
G3P1_STAAS1.108e-1843.82Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Stap... [more]
G3P1_STAAR1.108e-1843.82Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Stap... [more]
G3P1_STAAN1.108e-1843.82Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Stap... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-102-002-C01-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665449 ID=EY665449; Name=EY665449; organism=Citrus sinensis; type=EST; length=850bp
GCTTCGGCCACTCTCTCTGTATCCAAATCAGCTCTTCAGGGAAATGGTAA
GGGATTCTCACAATTCTCAGGTCTACGCAACTCTGCAAGCCTTCCTTTTG
GCAGGAAATCTTCTGATGACTTCCATTCAGTCATTGCTCTCCAGACCTCT
GCTTTAGGAAGCAGCAGCAGCGGGTACAGGAAGGTTGCTGCTCAGGCAAA
GCTGAAGGTTGCAATCAATGGGTTTGGTAGAATTGGTAGGAACTTCTTGA
GGTGCTGGCACGGCCGCAAGGACTCTCCACTTGAAGTCGTTGCCATCAAT
GACACCGGAGGTGTCAAGCAGGCCTCTCACCTCCTCAAGTACGACTCCAC
CCTTGGCATCTTTGAAGCCGATGTTAAACCAGTTGGTACTGATGGCATCT
CTGTTGATGGCAAGGTCATCCAGGTTGTTTCTAACCGCAACCCCGTCAAT
CTCCCCTGGGGGGGACTTGGGCATCGACCTTGTGATTGAAGGGACAGGAG
TGTTTGTAGAAAGAGAGGGTGCGGGCAAGCACATTCAGGCTGGTGCCAAG
AAAGTACTTATTACAGCCCCCCGGAAAGGGTGACATCCCAACCCTACCGT
TGTTGGGGGTCCAATGCGGAATGCTTTACAAGCCAGATGAACCCCATCAT
CAGAAATGCTTCTTGGCACAACCAACTGCCTTGCCCCCTTTCTTCAAGGG
TCTTGGACCAAAAGCTTTGGCATTATTCAGGGAAACCCTGACCACCCACA
CCCCTCCTACACTTGGGGGAACCAAAGGTTACTCCCAAGCTAACCCACCG
GGAACCTAGGGGGAAAAAAAAAAAGCTGCAATCCAAATGTGCCCCAAAAT
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