EY665449

Overview
NameEY665449
Unique NameEY665449
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length850
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY665449_ssr160 microsatellite EY665449_ssr160:160..171. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY665449 vs. ExPASy Swiss-Prot
Match: G3P1_STAAM (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=gapA1 PE=1 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 1.108e-18
Identity = 39/89 (43.82%), Postives = 51/89 (57.30%), Query Frame = 1
Query:  202 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGGL 468
            +KVAINGFGRIGR   R    ++   LEVVA+ND       +HLLKYD+  G F  +V+ V   G  V+GK ++  S  +   LPW  L
Sbjct:    3 VKVAINGFGRIGRLAFR--RIQEVEGLEVVAVNDLTDDDMLAHLLKYDTMQGRFTGEVEVV-DGGFRVNGKEVKSFSEPDASKLPWKDL 88          

HSP 2 Score: 53.1434 bits (126), Expect = 1.108e-18
Identity = 37/93 (39.78%), Postives = 50/93 (53.76%), Query Frame = 2
Query:  455 PGGDLGIDLVIEGTGVFVEREGAGKHIQAGAKKVLITAPRKG*HPNPTVVGGPMRNALQAR*TPSSEMLLGTTNCLAPFLQGSWTKSFGIIQG 733
            P  DL ID+V+E TG + +++ A  HI+AGAKKVLI+AP  G     T+V       L    T  S     TTN LAP  +      FG+++G
Sbjct:   84 PWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLISAPATG--DLKTIVFNTNHQELDGSETVVSGASC-TTNSLAPVAK-VLNDDFGLVEG 172          
BLAST of EY665449 vs. ExPASy Swiss-Prot
Match: G3P1_STAAC (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Staphylococcus aureus (strain COL) GN=gapA1 PE=3 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 1.108e-18
Identity = 39/89 (43.82%), Postives = 51/89 (57.30%), Query Frame = 1
Query:  202 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGGL 468
            +KVAINGFGRIGR   R    ++   LEVVA+ND       +HLLKYD+  G F  +V+ V   G  V+GK ++  S  +   LPW  L
Sbjct:    3 VKVAINGFGRIGRLAFR--RIQEVEGLEVVAVNDLTDDDMLAHLLKYDTMQGRFTGEVEVV-DGGFRVNGKEVKSFSEPDASKLPWKDL 88          

HSP 2 Score: 53.1434 bits (126), Expect = 1.108e-18
Identity = 37/93 (39.78%), Postives = 50/93 (53.76%), Query Frame = 2
Query:  455 PGGDLGIDLVIEGTGVFVEREGAGKHIQAGAKKVLITAPRKG*HPNPTVVGGPMRNALQAR*TPSSEMLLGTTNCLAPFLQGSWTKSFGIIQG 733
            P  DL ID+V+E TG + +++ A  HI+AGAKKVLI+AP  G     T+V       L    T  S     TTN LAP  +      FG+++G
Sbjct:   84 PWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLISAPATG--DLKTIVFNTNHQELDGSETVVSGASC-TTNSLAPVAK-VLNDDFGLVEG 172          
BLAST of EY665449 vs. ExPASy Swiss-Prot
Match: E4PD_SHEB2 (D-erythrose-4-phosphate dehydrogenase OS=Shewanella baltica (strain OS223) GN=epd PE=3 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 2.436e-18
Identity = 33/87 (37.93%), Postives = 51/87 (58.62%), Query Frame = 1
Query:  202 LKVAINGFGRIGRNFLRC-WHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPW 459
            ++VAING+GRIGR+ LR  +   K   +++VAIN+    +   HL +YD+T G F   VK V  D + +    I+++   +P  LPW
Sbjct:    2 IRVAINGYGRIGRSILRALYESGKRQQMQIVAINELAKPEAIIHLTQYDTTHGRFAHKVKLV-DDHMLIGDDAIKILHEPDPTKLPW 87          

HSP 2 Score: 53.1434 bits (126), Expect = 2.436e-18
Identity = 35/97 (36.08%), Postives = 52/97 (53.61%), Query Frame = 2
Query:  443 PSISPGGDLGIDLVIEGTGVFVEREGAGKHIQAGAKKVLITAPRKG*HPNPTVVGGPMRNALQAR*TPSSEMLLGTTNCLAPFLQGSWTKSFGIIQG 733
            P+  P  ++ ID+V E TGV ++R+    HI AGAK+VLI+ P      + T+V G   + L+A  T  S     TTNC+ P +     + FG+  G
Sbjct:   82 PTKLPWHEMDIDIVYEATGVLLDRQSCEAHIHAGAKQVLISHPSSA-DVDGTIVYGVNHDLLRAEHTVVSNASC-TTNCIVPVID-VLDRHFGVKSG 175          
BLAST of EY665449 vs. ExPASy Swiss-Prot
Match: E4PD_SALG2 (D-erythrose-4-phosphate dehydrogenase OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=epd PE=3 SV=1)

HSP 1 Score: 62.3882 bits (150), Expect = 3.165e-18
Identity = 35/91 (38.46%), Postives = 55/91 (60.44%), Query Frame = 1
Query:  202 LKVAINGFGRIGRNFLRC-WHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGGLG 471
            +++AINGFGRIGRN +R  +   + + + VVAIN+       +HLLKYD++ G F  +V+    + + V   VI+++  R   +LPW  LG
Sbjct:    3 VRIAINGFGRIGRNVVRALYESGRRAEITVVAINELADAAGMAHLLKYDTSHGRFAWEVRH-EREQLFVGDDVIRILHERTLADLPWRELG 92          

HSP 2 Score: 50.8322 bits (120), Expect = 3.165e-18
Identity = 33/81 (40.74%), Postives = 46/81 (56.79%), Query Frame = 2
Query:  455 PGGDLGIDLVIEGTGVFVEREGAGKHIQAGAKKVLITAPRKG*HPNPTVVGGPMRNALQAR*TPSSEMLLGTTNCLAPFLQ 697
            P  +LG+D+V++ TGV+  RE    HI AGAKKVL + P      + TVV G  +N L+A     S     TTNC+ P ++
Sbjct:   87 PWRELGVDVVLDCTGVYGNREHGEAHIAAGAKKVLFSHPGSN-GLDATVVFGVNQNELRAEHRIVSNASC-TTNCIIPVIK 165          
BLAST of EY665449 vs. ExPASy Swiss-Prot
Match: G3P_LACDE (Glyceraldehyde-3-phosphate dehydrogenase OS=Lactobacillus delbrueckii subsp. bulgaricus GN=gap PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.119e-18
Identity = 40/88 (45.45%), Postives = 51/88 (57.95%), Query Frame = 1
Query:  202 LKVAINGFGRIGR-NFLRCWH-GRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPW 459
            +K+ INGFGRIGR  F R    G +   +EVVAIND       +HLLKYDST G F+ +V     D + VDGK  +V +     N+PW
Sbjct:    3 VKIGINGFGRIGRLAFRRIMDLGEETKDIEVVAINDLTTPAMLAHLLKYDSTHGTFDHEVSAT-EDSLVVDGKKYRVYAEPQAQNIPW 89          

HSP 2 Score: 45.8246 bits (107), Expect = 4.119e-18
Identity = 40/112 (35.71%), Postives = 57/112 (50.89%), Query Frame = 2
Query:  470 GIDLVIEGTGVFVEREGAGKHIQAGAKKVLITAPRKG*HPNPTVVGGPMRNALQAR*TPSSEMLLGTTNCLAPFLQGSWTKSFGIIQGNPDHPHPSYTWGNQRLLPS*PTGN 805
            G+D V+E TG +  +  +  H+ AGAK+VLI+AP    +   T+V    ++ L A  T  S     TTN LAP +  +  K FGI  G     H +YT   Q++L     GN
Sbjct:   94 GVDFVLECTGFYTSKAKSQAHLDAGAKRVLISAPAG--NDLKTIVYSVNQDTLTADDTIVSAGSC-TTNSLAP-MANALNKEFGIQVGTMTTIH-AYT-ATQKVLDGPDRGN 199          
BLAST of EY665449 vs. ExPASy Swiss-Prot
Match: E4PD_SALPK (D-erythrose-4-phosphate dehydrogenase OS=Salmonella paratyphi A (strain AKU_12601) GN=epd PE=3 SV=1)

HSP 1 Score: 62.3882 bits (150), Expect = 6.958e-18
Identity = 35/91 (38.46%), Postives = 55/91 (60.44%), Query Frame = 1
Query:  202 LKVAINGFGRIGRNFLRC-WHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGGLG 471
            +++AINGFGRIGRN +R  +   + + + VVAIN+       +HLLKYD++ G F  +V+    + + V   VI+++  R   +LPW  LG
Sbjct:    3 VRIAINGFGRIGRNVVRALYESGRRAEITVVAINELADAAGMAHLLKYDTSHGRFAWEVRH-EREQLFVGDDVIRILHERTLADLPWRELG 92          

HSP 2 Score: 49.6766 bits (117), Expect = 6.958e-18
Identity = 32/81 (39.51%), Postives = 46/81 (56.79%), Query Frame = 2
Query:  455 PGGDLGIDLVIEGTGVFVEREGAGKHIQAGAKKVLITAPRKG*HPNPTVVGGPMRNALQAR*TPSSEMLLGTTNCLAPFLQ 697
            P  +LG+D+V++ TGV+  +E    HI AGAKKVL + P      + TVV G  +N L+A     S     TTNC+ P ++
Sbjct:   87 PWRELGVDVVLDCTGVYGNQEHGEAHIAAGAKKVLFSHPGSN-DLDATVVFGVNQNQLRAEHRIVSNASC-TTNCIIPVIK 165          
BLAST of EY665449 vs. ExPASy Swiss-Prot
Match: E4PD_SALPA (D-erythrose-4-phosphate dehydrogenase OS=Salmonella paratyphi A GN=epd PE=3 SV=1)

HSP 1 Score: 62.3882 bits (150), Expect = 6.958e-18
Identity = 35/91 (38.46%), Postives = 55/91 (60.44%), Query Frame = 1
Query:  202 LKVAINGFGRIGRNFLRC-WHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGGLG 471
            +++AINGFGRIGRN +R  +   + + + VVAIN+       +HLLKYD++ G F  +V+    + + V   VI+++  R   +LPW  LG
Sbjct:    3 VRIAINGFGRIGRNVVRALYESGRRAEITVVAINELADAAGMAHLLKYDTSHGRFAWEVRH-EREQLFVGDDVIRILHERTLADLPWRELG 92          

HSP 2 Score: 49.6766 bits (117), Expect = 6.958e-18
Identity = 32/81 (39.51%), Postives = 46/81 (56.79%), Query Frame = 2
Query:  455 PGGDLGIDLVIEGTGVFVEREGAGKHIQAGAKKVLITAPRKG*HPNPTVVGGPMRNALQAR*TPSSEMLLGTTNCLAPFLQ 697
            P  +LG+D+V++ TGV+  +E    HI AGAKKVL + P      + TVV G  +N L+A     S     TTNC+ P ++
Sbjct:   87 PWRELGVDVVLDCTGVYGNQEHGEAHIAAGAKKVLFSHPGSN-DLDATVVFGVNQNQLRAEHRIVSNASC-TTNCIIPVIK 165          
BLAST of EY665449 vs. ExPASy Swiss-Prot
Match: G3P_STRCO (Glyceraldehyde-3-phosphate dehydrogenase OS=Streptomyces coelicolor GN=gap PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 9.803e-18
Identity = 59/170 (34.71%), Postives = 89/170 (52.35%), Query Frame = 1
Query:  202 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGGLGHRPCD*RDRSVCRKRGCGQAHSGWCQESTYYSPPERVTSQPYRCWGSNAECFTSQMNPIIRNASWHNQLPCPLSSRVLDQ 711
            ++V INGFGRIGRN+ R     + + +E+VA+ND G     +HLLKYD+ LG  +A+V     D I+VDGK I+V+S RNP ++PWG LG          +  K+   + H     +    S P +         G N + +    + +I NAS       P+ ++VLD+
Sbjct:    3 IRVGINGFGRIGRNYFRALL-EQGADIEIVAVNDLGDTATTAHLLKYDTILGRLKAEVSHT-EDTITVDGKTIKVLSERNPADIPWGELG-VDIVIESTGIFTKKADAEKHIAGGAKKVLISAPAK-DEDITIVMGVNQDKYDPANHHVISNASCTTNCVAPM-AKVLDE 167          

HSP 2 Score: 67.781 bits (164), Expect = 8.887e-11
Identity = 47/118 (39.83%), Postives = 71/118 (60.17%), Query Frame = 2
Query:  443 PSISPGGDLGIDLVIEGTGVFVEREGAGKHIQAGAKKVLITAPRKG*HPNPTVVGGPMRNALQAR*TPSSEMLLG----TTNCLAPFLQGSWTKSFGIIQGNPDHPHPSYTWGNQRLL 784
            P+  P G+LG+D+VIE TG+F ++  A KHI  GAKKVLI+AP K    + T+V G      Q +  P++  ++     TTNC+AP  +    ++FGI++G     H +YT  +QR+L
Sbjct:   81 PADIPWGELGVDIVIESTGIFTKKADAEKHIAGGAKKVLISAPAK--DEDITIVMG----VNQDKYDPANHHVISNASCTTNCVAPMAK-VLDENFGIVKGLMTTVH-AYT-NDQRIL 189          
BLAST of EY665449 vs. ExPASy Swiss-Prot
Match: G3P_PHARH (Glyceraldehyde-3-phosphate dehydrogenase OS=Phaffia rhodozyma GN=GPD PE=3 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 1.177e-17
Identity = 39/93 (41.94%), Postives = 55/93 (59.14%), Query Frame = 1
Query:  202 LKVAINGFGRIGRNFLR--CWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGGLG 471
            +KV INGFGRIGR  LR    HG     ++VVAIND    ++   ++ KYDST G+F+  V+ +    + ++GK I V   R+P N+ WG  G
Sbjct:    3 VKVGINGFGRIGRIVLRNAIIHG----DIDVVAINDPFIDLEYMVYMFKYDSTHGVFKGSVE-IKDGKLVIEGKPIVVYGERDPANIQWGAAG 90          

HSP 2 Score: 48.1358 bits (113), Expect = 1.177e-17
Identity = 32/76 (42.11%), Postives = 40/76 (52.63%), Query Frame = 2
Query:  461 GDLGIDLVIEGTGVFVEREGAGKHIQAGAKKVLITAPRKG*HPNPTVVGGPMRNALQAR*TPSSEMLLGTTNCLAP 688
            G  G D V+E TGVF  +E A  H++ GAKKV+I+AP       P  V G   +    + T  S     TTNCLAP
Sbjct:   87 GAAGADYVVESTGVFTTQEKAELHLKGGAKKVVISAPSA---DAPMFVCGVNLDKYDPKYTVVSNASC-TTNCLAP 158          
BLAST of EY665449 vs. ExPASy Swiss-Prot
Match: G3P_AQUAE (Glyceraldehyde-3-phosphate dehydrogenase OS=Aquifex aeolicus GN=gap PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.280e-17
Identity = 47/90 (52.22%), Postives = 61/90 (67.78%), Query Frame = 1
Query:  202 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGGLG 471
            +KV INGFGRIGR+F R   GR++  +E+VAIND    K  +HLLKYDS  GIF+  V+    D I VDGK I+V + ++P  +PWG LG
Sbjct:    3 IKVGINGFGRIGRSFFRASWGREE--IEIVAINDLTDAKHLAHLLKYDSVHGIFKGSVE-AKDDSIVVDGKEIKVFAQKDPSQIPWGDLG 89          

HSP 2 Score: 80.8777 bits (198), Expect = 1.014e-14
Identity = 54/121 (44.63%), Postives = 72/121 (59.50%), Query Frame = 2
Query:  422 RLFLTATPSISPGGDLGIDLVIEGTGVFVEREGAGKHIQAGAKKVLITAPRKG*HPNPTVVGGPMRNALQAR*TPSSEMLLGTTNCLAPFLQGSWTKSFGIIQGNPDHPHPSYTWGNQRLL 784
            ++F    PS  P GDLG+D+VIE TGVF +RE A KH+Q GAKKV+ITAP K  +P+ TVV G        +          TTNCLAP ++    ++FG+ +G     H +YT  +QRLL
Sbjct:   73 KVFAQKDPSQIPWGDLGVDVVIEATGVFRDRENASKHLQGGAKKVIITAPAK--NPDITVVLGVNEEKYNPKEHNIISNASCTTNCLAPCVK-VLNEAFGVEKGYMVTVH-AYT-NDQRLL 188          
The following BLAST results are available for this feature:
BLAST of EY665449 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 147
Match NameE-valueIdentityDescription
G3P1_STAAM1.108e-1843.82Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Stap... [more]
G3P1_STAAC1.108e-1843.82Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Stap... [more]
E4PD_SHEB22.436e-1837.93D-erythrose-4-phosphate dehydrogenase OS=Shewanell... [more]
E4PD_SALG23.165e-1838.46D-erythrose-4-phosphate dehydrogenase OS=Salmonell... [more]
G3P_LACDE4.119e-1845.45Glyceraldehyde-3-phosphate dehydrogenase OS=Lactob... [more]
E4PD_SALPK6.958e-1838.46D-erythrose-4-phosphate dehydrogenase OS=Salmonell... [more]
E4PD_SALPA6.958e-1838.46D-erythrose-4-phosphate dehydrogenase OS=Salmonell... [more]
G3P_STRCO9.803e-1834.71Glyceraldehyde-3-phosphate dehydrogenase OS=Strept... [more]
G3P_PHARH1.177e-1741.94Glyceraldehyde-3-phosphate dehydrogenase OS=Phaffi... [more]
G3P_AQUAE1.280e-1752.22Glyceraldehyde-3-phosphate dehydrogenase OS=Aquife... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-102-002-C01-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665449 ID=EY665449; Name=EY665449; organism=Citrus sinensis; type=EST; length=850bp
GCTTCGGCCACTCTCTCTGTATCCAAATCAGCTCTTCAGGGAAATGGTAA
GGGATTCTCACAATTCTCAGGTCTACGCAACTCTGCAAGCCTTCCTTTTG
GCAGGAAATCTTCTGATGACTTCCATTCAGTCATTGCTCTCCAGACCTCT
GCTTTAGGAAGCAGCAGCAGCGGGTACAGGAAGGTTGCTGCTCAGGCAAA
GCTGAAGGTTGCAATCAATGGGTTTGGTAGAATTGGTAGGAACTTCTTGA
GGTGCTGGCACGGCCGCAAGGACTCTCCACTTGAAGTCGTTGCCATCAAT
GACACCGGAGGTGTCAAGCAGGCCTCTCACCTCCTCAAGTACGACTCCAC
CCTTGGCATCTTTGAAGCCGATGTTAAACCAGTTGGTACTGATGGCATCT
CTGTTGATGGCAAGGTCATCCAGGTTGTTTCTAACCGCAACCCCGTCAAT
CTCCCCTGGGGGGGACTTGGGCATCGACCTTGTGATTGAAGGGACAGGAG
TGTTTGTAGAAAGAGAGGGTGCGGGCAAGCACATTCAGGCTGGTGCCAAG
AAAGTACTTATTACAGCCCCCCGGAAAGGGTGACATCCCAACCCTACCGT
TGTTGGGGGTCCAATGCGGAATGCTTTACAAGCCAGATGAACCCCATCAT
CAGAAATGCTTCTTGGCACAACCAACTGCCTTGCCCCCTTTCTTCAAGGG
TCTTGGACCAAAAGCTTTGGCATTATTCAGGGAAACCCTGACCACCCACA
CCCCTCCTACACTTGGGGGAACCAAAGGTTACTCCCAAGCTAACCCACCG
GGAACCTAGGGGGAAAAAAAAAAAGCTGCAATCCAAATGTGCCCCAAAAT
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