EY665449

Overview
NameEY665449
Unique NameEY665449
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length850
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY665449_ssr160 microsatellite EY665449_ssr160:160..171. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY665449 vs. ExPASy Swiss-Prot
Match: G3P3_ECOLI (Putative glyceraldehyde-3-phosphate dehydrogenase C OS=Escherichia coli (strain K12) GN=gapC PE=5 SV=2)

HSP 1 Score: 60.077 bits (144), Expect = 4.635e-16
Identity = 41/92 (44.57%), Postives = 50/92 (54.35%), Query Frame = 1
Query:  205 KVAINGFGRIGRNFLRCWHGRK---DSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGGLG 471
            KV INGFGRIGR  L    GR     S ++VVAIND    K  ++LLK+DS  G F   V     D + VDGK I V + +   N+PW   G
Sbjct:    3 KVGINGFGRIGRLVL----GRLLEVKSNIDVVAINDLTSPKILAYLLKHDSNYGPFPWSV-DFTEDSLIVDGKSIAVYAEKEAKNIPWKAKG 89          

HSP 2 Score: 45.8246 bits (107), Expect = 4.635e-16
Identity = 39/105 (37.14%), Postives = 54/105 (51.43%), Query Frame = 2
Query:  470 GIDLVIEGTGVFVEREGAGKHIQAGAKKVLITAPRKG*HPNPTVVGGPMRNALQAR*TPSSEMLLGTTNCLAPFLQGSWTKSFGIIQGNPDHPHPSYTWGNQRLL 784
            G ++++E TG +   E +  H+ AGAKKVLI+AP        T+V     + L    T  S +   TTNCLAP  + +   SFGI  G     H +YT G Q L+
Sbjct:   89 GAEIIVECTGFYTSAEKSQAHLDAGAKKVLISAPA---GEMKTIVYNVNDDTLDGNDTIVS-VASCTTNCLAPMAK-ALHDSFGIEVGTMTTIH-AYT-GTQSLV 186          
BLAST of EY665449 vs. ExPASy Swiss-Prot
Match: G3P_SEROD (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Serratia odorifera GN=gap PE=3 SV=1)

HSP 1 Score: 54.6842 bits (130), Expect = 6.046e-16
Identity = 36/89 (40.45%), Postives = 49/89 (55.06%), Query Frame = 2
Query:  464 DLGIDLVIEGTGVFVEREGAGKHIQAGAKKVLITAPRKG*HPNPTVVGGPMRNALQAR*TPSSEMLLGTTNCLAPFLQGSWTKSFGIIQ 730
            ++G+D+V E TG+F+  E A KHI AGAKKV++T P K     P  V G    +   +   S+     TTNCLAP L       FGI++
Sbjct:   72 EVGVDVVAEATGIFLTDETARKHIAAGAKKVVLTGPSK--DDTPMFVMGVNLKSYAGQEIVSNASC--TTNCLAP-LAKVINDKFGIVE 155          

HSP 2 Score: 50.8322 bits (120), Expect = 6.046e-16
Identity = 26/66 (39.39%), Postives = 41/66 (62.12%), Query Frame = 1
Query:  274 SPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGGLG 471
            S +E+VAIND    +  +++LKYDST G F   V+ V    + V+G+ I+V + ++P NL W  +G
Sbjct:   10 SDIEIVAINDLLDAEYMAYMLKYDSTHGRFNGSVE-VKDGHLVVNGQTIRVTAEKDPANLKWNEVG 74          
BLAST of EY665449 vs. ExPASy Swiss-Prot
Match: G3PC_RALEH (Glyceraldehyde-3-phosphate dehydrogenase, chromosomal OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=cbbGC PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.025e-16
Identity = 45/91 (49.45%), Postives = 58/91 (63.74%), Query Frame = 1
Query:  202 LKVAINGFGRIGRNFLRC-WHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGGLG 471
            +KVAING+GRIGRN LR  + G K   +E+VAIND G     +HL +YD+  G F  +V  V  D   V+G  I+V++ RNP  LPWG LG
Sbjct:    3 IKVAINGYGRIGRNVLRAHYEGGKRHDIEIVAINDLGNAATNAHLTQYDTVHGRFPGEVS-VDGDAFRVNGDRIRVLAQRNPAELPWGELG 92          
BLAST of EY665449 vs. ExPASy Swiss-Prot
Match: E4PD_PSEA6 (D-erythrose-4-phosphate dehydrogenase OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=epd PE=3 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 1.017e-15
Identity = 34/90 (37.78%), Postives = 52/90 (57.78%), Query Frame = 1
Query:  202 LKVAINGFGRIGRNFLRC-WHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGGL 468
            ++VAINGFGR+GRN LR  +   ++  +++VAIN+    +  +HLLKYD+  G F   V  +    + V G  I ++   N  +LPW  L
Sbjct:    2 IRVAINGFGRVGRNVLRALYETGQNKQIQIVAINELAEPEGVAHLLKYDTAHGRFRFPV-VLDNQQLVVAGDHITLLQQENIRDLPWAQL 90          

HSP 2 Score: 45.4394 bits (106), Expect = 1.017e-15
Identity = 32/85 (37.65%), Postives = 46/85 (54.12%), Query Frame = 2
Query:  455 PGGDLGIDLVIEGTGVFVEREGAGKHIQAGAKKVLITAPRKG*HPNPTVVGGPMRNALQAR*TPSSEMLLG----TTNCLAPFLQ 697
            P   L ID+V+E TGV  ER    +HI  GAKKVL + P  G   + T++ G    +L+A     S+ ++     TTNC+ P +Q
Sbjct:   86 PWAQLDIDVVLECTGVNNERVHGEQHIAQGAKKVLFSQP-CGPDVDATIIMGINEESLKA-----SDSIVSAGSCTTNCIVPVIQ 164          
BLAST of EY665449 vs. ExPASy Swiss-Prot
Match: E4PD_VIBVY (D-erythrose-4-phosphate dehydrogenase OS=Vibrio vulnificus (strain YJ016) GN=epd PE=3 SV=1)

HSP 1 Score: 54.299 bits (129), Expect = 2.231e-15
Identity = 28/55 (50.91%), Postives = 38/55 (69.09%), Query Frame = 1
Query:  202 LKVAINGFGRIGRNFLRC-WHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIF 363
            LKVAINGFGRIGRN LR  +   K   ++VVA+N+    +  +HLL+YD++ G F
Sbjct:    2 LKVAINGFGRIGRNVLRAVYESGKHQQIKVVAVNELAQPEAMAHLLQYDTSHGRF 56          

HSP 2 Score: 49.2914 bits (116), Expect = 2.231e-15
Identity = 39/114 (34.21%), Postives = 58/114 (50.88%), Query Frame = 2
Query:  416 SSRLFLTATPSISPGGDLGIDLVIEGTGVFVEREGAGKHIQAGAKKVLITAPRKG*HPNPTVVGGPMRNALQAR*TPSSEMLLGTTNCLAPFLQGSWTKSFGIIQGNPDHPHPS 757
            S R+   +  ++ P  DL +DLV++ TGVF  +    +HI+AGAKKVL + P      N T++ G     L+A     S     TTNC+ P ++    ++FGI  G     H S
Sbjct:   83 SIRILHLSEINLLPWRDLEVDLVLDCTGVFGCQADGLEHIKAGAKKVLFSHPGASDLDN-TIIYGVNHETLKAEHNVVSNGSC-TTNCIVPIIK-VLDEAFGIESGTITTIHSS 193          
BLAST of EY665449 vs. ExPASy Swiss-Prot
Match: E4PD_VIBVU (D-erythrose-4-phosphate dehydrogenase OS=Vibrio vulnificus GN=epd PE=3 SV=1)

HSP 1 Score: 54.299 bits (129), Expect = 2.231e-15
Identity = 28/55 (50.91%), Postives = 38/55 (69.09%), Query Frame = 1
Query:  202 LKVAINGFGRIGRNFLRC-WHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIF 363
            LKVAINGFGRIGRN LR  +   K   ++VVA+N+    +  +HLL+YD++ G F
Sbjct:    2 LKVAINGFGRIGRNVLRAVYESGKHQQIKVVAVNELAQPEAMAHLLQYDTSHGRF 56          

HSP 2 Score: 49.2914 bits (116), Expect = 2.231e-15
Identity = 39/114 (34.21%), Postives = 58/114 (50.88%), Query Frame = 2
Query:  416 SSRLFLTATPSISPGGDLGIDLVIEGTGVFVEREGAGKHIQAGAKKVLITAPRKG*HPNPTVVGGPMRNALQAR*TPSSEMLLGTTNCLAPFLQGSWTKSFGIIQGNPDHPHPS 757
            S R+   +  ++ P  DL +DLV++ TGVF  +    +HI+AGAKKVL + P      N T++ G     L+A     S     TTNC+ P ++    ++FGI  G     H S
Sbjct:   83 SIRILHLSEINLLPWRDLEVDLVLDCTGVFGCQADGLEHIKAGAKKVLFSHPGASDLDN-TIIYGVNHETLKAEHNVVSNGSC-TTNCIVPIIK-VLDEAFGIESGTITTIHSS 193          
BLAST of EY665449 vs. ExPASy Swiss-Prot
Match: E4PD_VIBF1 (D-erythrose-4-phosphate dehydrogenase OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=epd PE=3 SV=1)

HSP 1 Score: 54.6842 bits (130), Expect = 3.770e-15
Identity = 29/59 (49.15%), Postives = 39/59 (66.10%), Query Frame = 1
Query:  202 LKVAINGFGRIGRNFLRC-WHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADV 375
            L+VAINGFGRIGR+ LR  +   K   +EVVA+N+    +  +HL +YDST G F+  V
Sbjct:    2 LRVAINGFGRIGRSVLRALYESDKRDKIEVVAVNELSQPEAMAHLFQYDSTHGRFQHKV 60          

HSP 2 Score: 48.1358 bits (113), Expect = 3.770e-15
Identity = 38/115 (33.04%), Postives = 57/115 (49.57%), Query Frame = 2
Query:  422 RLFLTATPSISPGGDLGIDLVIEGTGVFVEREGAGKHIQAGAKKVLITAPRKG*HPNPTVVGGPMRNALQAR*TPSSEMLLG---TTNCLAPFLQGSWTKSFGIIQGNPDHPHPS 757
            R+   A  S+ P   L +DLV++ TGV+  +    KHI AGAKKVL + P  G   + T++ G   + L     P   ++     TTNC+ P ++ +   +FGI  G     H S
Sbjct:   80 RILHQADLSLLPWQSLEVDLVLDCTGVYGSKSDGEKHITAGAKKVLFSHP-GGSDLDNTIIYGVNHDTL----LPEHRIVSNGSCTTNCIIPVIK-AIDDAFGIDSGTITTIHSS 188          
BLAST of EY665449 vs. ExPASy Swiss-Prot
Match: G3P_DROHY (Glyceraldehyde-3-phosphate dehydrogenase OS=Drosophila hydei GN=Gapdh1 PE=3 SV=1)

HSP 1 Score: 57.7658 bits (138), Expect = 3.772e-15
Identity = 38/90 (42.22%), Postives = 48/90 (53.33%), Query Frame = 1
Query:  205 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGGLG 471
            K+ INGFGRIGR  LR      D    VVA+ND    V    +L K+DST G F+  V   G   + V+G+ I V S R+P N+ W   G
Sbjct:    3 KIGINGFGRIGRLVLR---AAVDKGASVVAVNDPFIDVNYMVYLFKFDSTHGRFKGTVSAEG-GFLVVNGQKITVFSERDPANINWASAG 88          

HSP 2 Score: 45.0542 bits (105), Expect = 3.772e-15
Identity = 30/76 (39.47%), Postives = 41/76 (53.95%), Query Frame = 2
Query:  470 GIDLVIEGTGVFVEREGAGKHIQAGAKKVLITAPRKG*HPNPTVVGGPMRNALQAR*TPSSEMLLG---TTNCLAP 688
            G + V+E TGVF   E A  H++ GAKKV+I+AP       P  V G   +A     +P  +++     TTNCLAP
Sbjct:   88 GAEYVVESTGVFTTTEKASTHLKGGAKKVVISAPSA---DAPMFVCGVNLDAY----SPDMKVVSNASCTTNCLAP 156          
BLAST of EY665449 vs. ExPASy Swiss-Prot
Match: E4PD_VIBFM (D-erythrose-4-phosphate dehydrogenase OS=Vibrio fischeri (strain MJ11) GN=epd PE=3 SV=1)

HSP 1 Score: 54.6842 bits (130), Expect = 4.899e-15
Identity = 29/59 (49.15%), Postives = 39/59 (66.10%), Query Frame = 1
Query:  202 LKVAINGFGRIGRNFLRC-WHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADV 375
            L+VAINGFGRIGR+ LR  +   K   +EVVA+N+    +  +HL +YDST G F+  V
Sbjct:    2 LRVAINGFGRIGRSVLRALYESDKRDKIEVVAVNELSQPEAMAHLFQYDSTHGRFQHKV 60          

HSP 2 Score: 47.7506 bits (112), Expect = 4.899e-15
Identity = 37/115 (32.17%), Postives = 57/115 (49.57%), Query Frame = 2
Query:  422 RLFLTATPSISPGGDLGIDLVIEGTGVFVEREGAGKHIQAGAKKVLITAPRKG*HPNPTVVGGPMRNALQAR*TPSSEMLLG---TTNCLAPFLQGSWTKSFGIIQGNPDHPHPS 757
            R+   A  S+ P   L +DL+++ TGV+  +    KHI AGAKKVL + P  G   + T++ G   + L     P   ++     TTNC+ P ++ +   +FGI  G     H S
Sbjct:   80 RILHQADLSLLPWQSLEVDLILDCTGVYGSKADGEKHINAGAKKVLFSHP-GGSDLDNTIIYGVNHDTL----LPEHRIVSNGSCTTNCIIPVIK-AIDDAFGIDSGTITTIHSS 188          
BLAST of EY665449 vs. ExPASy Swiss-Prot
Match: G3P2_DROPS (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Drosophila pseudoobscura pseudoobscura GN=Gapdh2 PE=2 SV=2)

HSP 1 Score: 56.9954 bits (136), Expect = 4.902e-15
Identity = 38/90 (42.22%), Postives = 48/90 (53.33%), Query Frame = 1
Query:  205 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGGLG 471
            K+ INGFGRIGR  LR      D    VVA+ND    V    +L K+DST G F+  V   G   + V+G+ I V S R+P N+ W   G
Sbjct:    3 KIGINGFGRIGRLVLR---AAIDKGASVVAVNDPFIDVNYMVYLFKFDSTHGRFKGTVAAEG-GFLVVNGQKITVFSERDPANINWASAG 88          

HSP 2 Score: 45.4394 bits (106), Expect = 4.902e-15
Identity = 34/91 (37.36%), Postives = 48/91 (52.75%), Query Frame = 2
Query:  470 GIDLVIEGTGVFVEREGAGKHIQAGAKKVLITAPRKG*HPNPTVVGGPMRNALQAR*TPSSEMLLG---TTNCLAPFLQGSWTKSFGIIQG 733
            G + V+E TGVF   E A  H++ GAKKV+I+AP       P  V G   +A +    P  +++     TTNCLAP L      +F I++G
Sbjct:   88 GAEYVVESTGVFTTIEKASTHLKGGAKKVVISAPSA---DAPMFVCGVNLDAYK----PDMKVVSNASCTTNCLAP-LAKVINDNFEIVEG 170          
The following BLAST results are available for this feature:
BLAST of EY665449 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 147
Match NameE-valueIdentityDescription
G3P3_ECOLI4.635e-1644.57Putative glyceraldehyde-3-phosphate dehydrogenase ... [more]
G3P_SEROD6.046e-1640.45Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
G3PC_RALEH7.025e-1649.45Glyceraldehyde-3-phosphate dehydrogenase, chromoso... [more]
E4PD_PSEA61.017e-1537.78D-erythrose-4-phosphate dehydrogenase OS=Pseudoalt... [more]
E4PD_VIBVY2.231e-1550.91D-erythrose-4-phosphate dehydrogenase OS=Vibrio vu... [more]
E4PD_VIBVU2.231e-1550.91D-erythrose-4-phosphate dehydrogenase OS=Vibrio vu... [more]
E4PD_VIBF13.770e-1549.15D-erythrose-4-phosphate dehydrogenase OS=Vibrio fi... [more]
G3P_DROHY3.772e-1542.22Glyceraldehyde-3-phosphate dehydrogenase OS=Drosop... [more]
E4PD_VIBFM4.899e-1549.15D-erythrose-4-phosphate dehydrogenase OS=Vibrio fi... [more]
G3P2_DROPS4.902e-1542.22Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Dros... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-102-002-C01-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665449 ID=EY665449; Name=EY665449; organism=Citrus sinensis; type=EST; length=850bp
GCTTCGGCCACTCTCTCTGTATCCAAATCAGCTCTTCAGGGAAATGGTAA
GGGATTCTCACAATTCTCAGGTCTACGCAACTCTGCAAGCCTTCCTTTTG
GCAGGAAATCTTCTGATGACTTCCATTCAGTCATTGCTCTCCAGACCTCT
GCTTTAGGAAGCAGCAGCAGCGGGTACAGGAAGGTTGCTGCTCAGGCAAA
GCTGAAGGTTGCAATCAATGGGTTTGGTAGAATTGGTAGGAACTTCTTGA
GGTGCTGGCACGGCCGCAAGGACTCTCCACTTGAAGTCGTTGCCATCAAT
GACACCGGAGGTGTCAAGCAGGCCTCTCACCTCCTCAAGTACGACTCCAC
CCTTGGCATCTTTGAAGCCGATGTTAAACCAGTTGGTACTGATGGCATCT
CTGTTGATGGCAAGGTCATCCAGGTTGTTTCTAACCGCAACCCCGTCAAT
CTCCCCTGGGGGGGACTTGGGCATCGACCTTGTGATTGAAGGGACAGGAG
TGTTTGTAGAAAGAGAGGGTGCGGGCAAGCACATTCAGGCTGGTGCCAAG
AAAGTACTTATTACAGCCCCCCGGAAAGGGTGACATCCCAACCCTACCGT
TGTTGGGGGTCCAATGCGGAATGCTTTACAAGCCAGATGAACCCCATCAT
CAGAAATGCTTCTTGGCACAACCAACTGCCTTGCCCCCTTTCTTCAAGGG
TCTTGGACCAAAAGCTTTGGCATTATTCAGGGAAACCCTGACCACCCACA
CCCCTCCTACACTTGGGGGAACCAAAGGTTACTCCCAAGCTAACCCACCG
GGAACCTAGGGGGAAAAAAAAAAAGCTGCAATCCAAATGTGCCCCAAAAT
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