EY665449

Overview
NameEY665449
Unique NameEY665449
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length850
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY665449_ssr160 microsatellite EY665449_ssr160:160..171. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY665449 vs. ExPASy Swiss-Prot
Match: G3P_BORBU (Glyceraldehyde-3-phosphate dehydrogenase OS=Borrelia burgdorferi GN=gap PE=1 SV=3)

HSP 1 Score: 81.2629 bits (199), Expect = 7.767e-15
Identity = 44/91 (48.35%), Postives = 60/91 (65.93%), Query Frame = 1
Query:  202 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDG-ISVDGKVIQVVSNRNPVNLPWGGLG 471
            +K+AINGFGRIGRN  +    R    +++VAIND    K  +HLLKYDST G++   V+    DG I VDG+ I++++ R+P NLPW  LG
Sbjct:    1 MKLAINGFGRIGRNVFKIAFERG---IDIVAINDLTDPKTLAHLLKYDSTFGVYNKKVE--SRDGAIVVDGREIKIIAERDPKNLPWAKLG 86          
BLAST of EY665449 vs. ExPASy Swiss-Prot
Match: E4PD_PHOPR (D-erythrose-4-phosphate dehydrogenase OS=Photobacterium profundum GN=epd PE=3 SV=2)

HSP 1 Score: 54.299 bits (129), Expect = 8.258e-15
Identity = 32/65 (49.23%), Postives = 41/65 (63.08%), Query Frame = 1
Query:  202 LKVAINGFGRIGRNFLRC-WHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTD 393
            LKVAINGFGRIGR+ LR  +   K   + VVA+N+    +  +HLL+YDS+ G F    KPV  D
Sbjct:    3 LKVAINGFGRIGRSVLRALYESGKHHHINVVAVNELAEPEAMAHLLQYDSSHGRF---FKPVSHD 64          

HSP 2 Score: 47.3654 bits (111), Expect = 8.258e-15
Identity = 32/96 (33.33%), Postives = 48/96 (50.00%), Query Frame = 2
Query:  446 SISPGGDLGIDLVIEGTGVFVEREGAGKHIQAGAKKVLITAPRKG*HPNPTVVGGPMRNALQAR*TPSSEMLLGTTNCLAPFLQGSWTKSFGIIQG 733
            ++ P  DL +D+V++ TGV+  RE    HI+AGAKKVL + P      N  + G   +         S+     TTNC+ P ++     +FGI  G
Sbjct:   89 TLLPWHDLDVDIVLDCTGVYGSREDGLAHIKAGAKKVLFSHPAANDIDNTIIYGVNHKTLTSEHRIVSNGSC--TTNCIVPVIK-IIDDAFGIESG 181          
BLAST of EY665449 vs. ExPASy Swiss-Prot
Match: G3P1_DROME (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Drosophila melanogaster GN=Gapdh1 PE=2 SV=2)

HSP 1 Score: 56.9954 bits (136), Expect = 8.277e-15
Identity = 38/90 (42.22%), Postives = 48/90 (53.33%), Query Frame = 1
Query:  205 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGGLG 471
            K+ INGFGRIGR  LR      D    VVA+ND    V    +L K+DST G F+  V   G   + V+G+ I V S R+P N+ W   G
Sbjct:    3 KIGINGFGRIGRLVLR---AAIDKGASVVAVNDPFIDVNYMVYLFKFDSTHGRFKGTVAAEG-GFLVVNGQKITVFSERDPANINWASAG 88          

HSP 2 Score: 44.669 bits (104), Expect = 8.277e-15
Identity = 33/91 (36.26%), Postives = 48/91 (52.75%), Query Frame = 2
Query:  470 GIDLVIEGTGVFVEREGAGKHIQAGAKKVLITAPRKG*HPNPTVVGGPMRNALQAR*TPSSEMLLG---TTNCLAPFLQGSWTKSFGIIQG 733
            G + V+E TGVF   + A  H++ GAKKV+I+AP       P  V G   +A     +P  +++     TTNCLAP L      +F I++G
Sbjct:   88 GAEYVVESTGVFTTIDKASTHLKGGAKKVIISAPSA---DAPMFVCGVNLDAY----SPDMKVVSNASCTTNCLAP-LAKVINDNFEIVEG 170          
BLAST of EY665449 vs. ExPASy Swiss-Prot
Match: E4PD_ALISL (D-erythrose-4-phosphate dehydrogenase OS=Aliivibrio salmonicida (strain LFI1238) GN=epd PE=3 SV=1)

HSP 1 Score: 54.6842 bits (130), Expect = 1.075e-14
Identity = 29/56 (51.79%), Postives = 41/56 (73.21%), Query Frame = 1
Query:  202 LKVAINGFGRIGRNFLRCWH--GRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIF 363
            L+VAINGFGRIGR+ LR  +  G++D  +E+VA+N+    +  +HLL+YDST G F
Sbjct:    2 LRVAINGFGRIGRSVLRALYESGKRDQ-IEIVAVNELSQPEGMAHLLQYDSTHGRF 56          

HSP 2 Score: 46.595 bits (109), Expect = 1.075e-14
Identity = 34/104 (32.69%), Postives = 50/104 (48.08%), Query Frame = 2
Query:  422 RLFLTATPSISPGGDLGIDLVIEGTGVFVEREGAGKHIQAGAKKVLITAPRKG*HPNPTVVGGPMRNALQAR*TPSSEMLLGTTNCLAPFLQGSWTKSFGIIQG 733
            R+   A  S+ P   L +DLV++ TGV+  +    +HI AGAKKVL + P      N  + G      L      S+     TTNC+ P ++ +   +FGI  G
Sbjct:   80 RIVHQADISLLPWQSLQVDLVLDCTGVYGSKADGERHIDAGAKKVLFSHPGSADLDNTIIYGVNHDTLLPEHRVVSNGSC--TTNCIIPVIK-AIDDAFGIESG 180          
BLAST of EY665449 vs. ExPASy Swiss-Prot
Match: G3P2_DROME (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Drosophila melanogaster GN=Gapdh2 PE=1 SV=2)

HSP 1 Score: 56.9954 bits (136), Expect = 1.076e-14
Identity = 38/90 (42.22%), Postives = 48/90 (53.33%), Query Frame = 1
Query:  205 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGGLG 471
            K+ INGFGRIGR  LR      D    VVA+ND    V    +L K+DST G F+  V   G   + V+G+ I V S R+P N+ W   G
Sbjct:    3 KIGINGFGRIGRLVLR---AAIDKGANVVAVNDPFIDVNYMVYLFKFDSTHGRFKGTVAAEG-GFLVVNGQKITVFSERDPANINWASAG 88          

HSP 2 Score: 44.2838 bits (103), Expect = 1.076e-14
Identity = 32/91 (35.16%), Postives = 48/91 (52.75%), Query Frame = 2
Query:  470 GIDLVIEGTGVFVEREGAGKHIQAGAKKVLITAPRKG*HPNPTVVGGPMRNALQAR*TPSSEMLLG---TTNCLAPFLQGSWTKSFGIIQG 733
            G + ++E TGVF   + A  H++ GAKKV+I+AP       P  V G   +A +    P  +++     TTNCLAP L      +F I++G
Sbjct:   88 GAEYIVESTGVFTTIDKASTHLKGGAKKVIISAPSA---DAPMFVCGVNLDAYK----PDMKVVSNASCTTNCLAP-LAKVINDNFEIVEG 170          
BLAST of EY665449 vs. ExPASy Swiss-Prot
Match: G3P1_BACCE (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Bacillus cereus GN=gap1 PE=1 SV=3)

HSP 1 Score: 80.4925 bits (197), Expect = 1.325e-14
Identity = 59/173 (34.10%), Postives = 84/173 (48.55%), Query Frame = 1
Query:  205 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGGLGHRPCD*RDRSVCRKRGCGQAHSGWCQESTYYSPP---ERVTSQPYRCWGSNAECFTSQMNPIIRNASWHNQLPCPLSSRVLDQK 714
            K+ INGFGRIGRN  R      +S +EVVAIND    K  +HLLKYD+  G   A+V     + I V+GK I+V++ R+P  LPW   G             K+   + H G   +    S P   E +T       G N E + +  + ++ NAS       P  ++VL++K
Sbjct:    3 KIGINGFGRIGRNVFRA--ALNNSEVEVVAINDLTDAKTLAHLLKYDTVHGTLNAEVS-ANENSIVVNGKEIKVIAERDPAQLPWSDYGVEVVV-ESTGRFTKKSDAEKHLGGSVKKVIISAPASDEDITV----VMGVNHEQYDAANHNVVSNASCTTNCLAPF-AKVLNEK 166          
BLAST of EY665449 vs. ExPASy Swiss-Prot
Match: G3P1_ANAVT (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=gap1 PE=3 SV=4)

HSP 1 Score: 80.1073 bits (196), Expect = 1.730e-14
Identity = 48/92 (52.17%), Postives = 55/92 (59.78%), Query Frame = 1
Query:  196 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGGLG 471
            AKLKV INGFGRIGR  LR   G  +  +E V IND       ++LLKYDST G   + V+    DGI +DG  I  VS RNP  LPWG LG
Sbjct:    2 AKLKVGINGFGRIGRLVLRA--GINNPNIEFVGINDLVPPDNLAYLLKYDSTHGKLRSQVE-AKDDGIVIDGHFIPCVSVRNPAELPWGKLG 90          

HSP 2 Score: 67.781 bits (164), Expect = 8.887e-11
Identity = 40/101 (39.60%), Postives = 59/101 (58.42%), Query Frame = 2
Query:  443 PSISPGGDLGIDLVIEGTGVFVEREGAGKHIQAGAKKVLITAPRKG*HPNPTVVGGPMRNALQAR*TPSSEMLLG----TTNCLAPFLQGSWTKSFGIIQG 733
            P+  P G LG D V+E TG+F + EGA KH+QAGAK+V+I+AP K      T++ G   +       PS ++++     TTNCLAP  +     +FG+ +G
Sbjct:   81 PAELPWGKLGADYVVESTGLFTDSEGASKHLQAGAKRVIISAPTKDPDRVRTLLVGVNHDLFD----PSKDVIVSNASCTTNCLAPIAK-VINDNFGLTEG 176          
BLAST of EY665449 vs. ExPASy Swiss-Prot
Match: G3P1_ANASP (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Anabaena sp. (strain PCC 7120) GN=gap1 PE=1 SV=3)

HSP 1 Score: 80.1073 bits (196), Expect = 1.730e-14
Identity = 48/92 (52.17%), Postives = 55/92 (59.78%), Query Frame = 1
Query:  196 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGGLG 471
            AKLKV INGFGRIGR  LR   G  +  +E V IND       ++LLKYDST G   + V+    DGI +DG  I  VS RNP  LPWG LG
Sbjct:    2 AKLKVGINGFGRIGRLVLRA--GINNPNIEFVGINDLVPPDNLAYLLKYDSTHGRLRSQVE-TKDDGIVIDGHFIPCVSVRNPAELPWGKLG 90          
BLAST of EY665449 vs. ExPASy Swiss-Prot
Match: E4PD_VIBHB (D-erythrose-4-phosphate dehydrogenase OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=epd PE=3 SV=1)

HSP 1 Score: 54.299 bits (129), Expect = 1.814e-14
Identity = 28/55 (50.91%), Postives = 38/55 (69.09%), Query Frame = 1
Query:  202 LKVAINGFGRIGRNFLRC-WHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIF 363
            LKVAINGFGRIGRN LR  +   K   ++VVA+N+    +  +HLL+YD++ G F
Sbjct:    2 LKVAINGFGRIGRNVLRAVYESGKHQQIKVVAVNELAQPEAMAHLLQYDTSHGRF 56          

HSP 2 Score: 46.2098 bits (108), Expect = 1.814e-14
Identity = 36/112 (32.14%), Postives = 54/112 (48.21%), Query Frame = 2
Query:  422 RLFLTATPSISPGGDLGIDLVIEGTGVFVEREGAGKHIQAGAKKVLITAPRKG*HPNPTVVGGPMRNALQAR*TPSSEMLLGTTNCLAPFLQGSWTKSFGIIQGNPDHPHPS 757
            R+   A   + P  DL +D+V++ TGVF  +     HI+AGA+KVL + P      N T++ G     L+      S     TTNC+ P ++    ++FGI  G     H S
Sbjct:   80 RILHLAEIELLPWRDLEVDIVLDCTGVFGSQADGQAHIEAGAQKVLFSHPGASDLDN-TIIYGVNHETLKDEHRVVSNGSC-TTNCIVPIIK-VLDEAFGIESGTITTIHSS 188          
BLAST of EY665449 vs. ExPASy Swiss-Prot
Match: E4PD_VIBCH (D-erythrose-4-phosphate dehydrogenase OS=Vibrio cholerae GN=epd PE=3 SV=1)

HSP 1 Score: 51.9878 bits (123), Expect = 2.357e-14
Identity = 27/55 (49.09%), Postives = 37/55 (67.27%), Query Frame = 1
Query:  202 LKVAINGFGRIGRNFLRC-WHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIF 363
            L+VAINGFGRIGRN LR  +   K   ++VVA+N+       +HLL+YD++ G F
Sbjct:    2 LRVAINGFGRIGRNVLRAVYESGKRDRIQVVAVNELAKPDAMAHLLQYDTSHGRF 56          

HSP 2 Score: 48.1358 bits (113), Expect = 2.357e-14
Identity = 40/111 (36.04%), Postives = 55/111 (49.55%), Query Frame = 2
Query:  425 LFLTATPSISPGGDLGIDLVIEGTGVFVEREGAGKHIQAGAKKVLITAPRKG*HPNPTVVGGPMRNALQAR*TPSSEMLLGTTNCLAPFLQGSWTKSFGIIQGNPDHPHPS 757
            L L+  P + P  DLG+DLV++ TGV+  +E   +HI AGAK VL + P      N T++ G     L A     S     TTNC+ P ++     +FGI  G     H S
Sbjct:   82 LHLSEIPLL-PWRDLGVDLVLDCTGVYGCQEDGQQHIDAGAKLVLFSHPGASDLDN-TIIYGVNHETLTAEHKIVSNGSC-TTNCIVPIIK-VLDDAFGIDSGTITTIHSS 188          
The following BLAST results are available for this feature:
BLAST of EY665449 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 147
Match NameE-valueIdentityDescription
G3P_BORBU7.767e-1548.35Glyceraldehyde-3-phosphate dehydrogenase OS=Borrel... [more]
E4PD_PHOPR8.258e-1549.23D-erythrose-4-phosphate dehydrogenase OS=Photobact... [more]
G3P1_DROME8.277e-1542.22Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Dros... [more]
E4PD_ALISL1.075e-1451.79D-erythrose-4-phosphate dehydrogenase OS=Aliivibri... [more]
G3P2_DROME1.076e-1442.22Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Dros... [more]
G3P1_BACCE1.325e-1434.10Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Baci... [more]
G3P1_ANAVT1.730e-1452.17Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Anab... [more]
G3P1_ANASP1.730e-1452.17Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Anab... [more]
E4PD_VIBHB1.814e-1450.91D-erythrose-4-phosphate dehydrogenase OS=Vibrio ha... [more]
E4PD_VIBCH2.357e-1449.09D-erythrose-4-phosphate dehydrogenase OS=Vibrio ch... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-102-002-C01-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665449 ID=EY665449; Name=EY665449; organism=Citrus sinensis; type=EST; length=850bp
GCTTCGGCCACTCTCTCTGTATCCAAATCAGCTCTTCAGGGAAATGGTAA
GGGATTCTCACAATTCTCAGGTCTACGCAACTCTGCAAGCCTTCCTTTTG
GCAGGAAATCTTCTGATGACTTCCATTCAGTCATTGCTCTCCAGACCTCT
GCTTTAGGAAGCAGCAGCAGCGGGTACAGGAAGGTTGCTGCTCAGGCAAA
GCTGAAGGTTGCAATCAATGGGTTTGGTAGAATTGGTAGGAACTTCTTGA
GGTGCTGGCACGGCCGCAAGGACTCTCCACTTGAAGTCGTTGCCATCAAT
GACACCGGAGGTGTCAAGCAGGCCTCTCACCTCCTCAAGTACGACTCCAC
CCTTGGCATCTTTGAAGCCGATGTTAAACCAGTTGGTACTGATGGCATCT
CTGTTGATGGCAAGGTCATCCAGGTTGTTTCTAACCGCAACCCCGTCAAT
CTCCCCTGGGGGGGACTTGGGCATCGACCTTGTGATTGAAGGGACAGGAG
TGTTTGTAGAAAGAGAGGGTGCGGGCAAGCACATTCAGGCTGGTGCCAAG
AAAGTACTTATTACAGCCCCCCGGAAAGGGTGACATCCCAACCCTACCGT
TGTTGGGGGTCCAATGCGGAATGCTTTACAAGCCAGATGAACCCCATCAT
CAGAAATGCTTCTTGGCACAACCAACTGCCTTGCCCCCTTTCTTCAAGGG
TCTTGGACCAAAAGCTTTGGCATTATTCAGGGAAACCCTGACCACCCACA
CCCCTCCTACACTTGGGGGAACCAAAGGTTACTCCCAAGCTAACCCACCG
GGAACCTAGGGGGAAAAAAAAAAAGCTGCAATCCAAATGTGCCCCAAAAT
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