EY665449

Overview
NameEY665449
Unique NameEY665449
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length850
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY665449_ssr160 microsatellite EY665449_ssr160:160..171. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY665449 vs. ExPASy Swiss-Prot
Match: E4PD_VIBC3 (D-erythrose-4-phosphate dehydrogenase OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=epd PE=1 SV=2)

HSP 1 Score: 51.9878 bits (123), Expect = 2.357e-14
Identity = 27/55 (49.09%), Postives = 37/55 (67.27%), Query Frame = 1
Query:  202 LKVAINGFGRIGRNFLRC-WHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIF 363
            L+VAINGFGRIGRN LR  +   K   ++VVA+N+       +HLL+YD++ G F
Sbjct:    2 LRVAINGFGRIGRNVLRAVYESGKRDRIQVVAVNELAKPDAMAHLLQYDTSHGRF 56          

HSP 2 Score: 48.1358 bits (113), Expect = 2.357e-14
Identity = 40/111 (36.04%), Postives = 55/111 (49.55%), Query Frame = 2
Query:  425 LFLTATPSISPGGDLGIDLVIEGTGVFVEREGAGKHIQAGAKKVLITAPRKG*HPNPTVVGGPMRNALQAR*TPSSEMLLGTTNCLAPFLQGSWTKSFGIIQGNPDHPHPS 757
            L L+  P + P  DLG+DLV++ TGV+  +E   +HI AGAK VL + P      N T++ G     L A     S     TTNC+ P ++     +FGI  G     H S
Sbjct:   82 LHLSEIPLL-PWRDLGVDLVLDCTGVYGCQEDGQQHIDAGAKLVLFSHPGASDLDN-TIIYGVNHETLTAEHKIVSNGSC-TTNCIVPIIK-VLDDAFGIDSGTITTIHSS 188          
BLAST of EY665449 vs. ExPASy Swiss-Prot
Match: E4PD_VIBPA (D-erythrose-4-phosphate dehydrogenase OS=Vibrio parahaemolyticus GN=epd PE=3 SV=1)

HSP 1 Score: 54.299 bits (129), Expect = 3.978e-14
Identity = 28/55 (50.91%), Postives = 38/55 (69.09%), Query Frame = 1
Query:  202 LKVAINGFGRIGRNFLRC-WHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIF 363
            LKVAINGFGRIGRN LR  +   K   ++VVA+N+    +  +HLL+YD++ G F
Sbjct:    2 LKVAINGFGRIGRNVLRAVYESGKHQQIKVVAVNELAQPEAMAHLLQYDTSHGRF 56          

HSP 2 Score: 45.0542 bits (105), Expect = 3.978e-14
Identity = 34/101 (33.66%), Postives = 50/101 (49.50%), Query Frame = 2
Query:  455 PGGDLGIDLVIEGTGVFVEREGAGKHIQAGAKKVLITAPRKG*HPNPTVVGGPMRNALQAR*TPSSEMLLGTTNCLAPFLQGSWTKSFGIIQGNPDHPHPS 757
            P  DL +D+V++ TGV+  +     HI+AGAKKVL + P      N T++ G     L+      S     TTNC+ P ++    ++FGI  G     H S
Sbjct:   91 PWRDLEVDIVLDCTGVYGSKADGLAHIEAGAKKVLFSHPGANDLDN-TIIYGVNHETLKDEHRVVSNGSC-TTNCIVPIIK-VLDEAFGIESGTITTIHSS 188          
BLAST of EY665449 vs. ExPASy Swiss-Prot
Match: G3P_PICCI (Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia ciferrii GN=GPD PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.576e-14
Identity = 62/173 (35.84%), Postives = 90/173 (52.02%), Query Frame = 1
Query:  202 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGGLG-HRPCD*RDRSVCRKRGCGQAHSGWCQESTYYSPPERVTSQPYRCWGSNAECFTSQMNPIIRNASWHNQLPCPLSSRVLDQK 714
            + V INGFGRIGR  LR    RKD  +++VAIND     + AS++ KYDST G +  +V   G + I +DGK I+V   R+PVN+PWG  G     D     V ++    Q H     +    + P   ++ P    G N + +T  +N II NAS       PL +++++ K
Sbjct:    3 ITVGINGFGRIGRLVLRIALSRKD--IQIVAINDPFIAPEYASYMFKYDSTHGRYSGEVSHEG-ENIVIDGKKIRVYQERDPVNIPWGKDGVDYVID--STGVFKELDSAQKHIDAGAKKVVITAPS--STAPMFVVGVNEDKYTPDLN-IISNASCTTNCLAPL-AKIINNK 166          
BLAST of EY665449 vs. ExPASy Swiss-Prot
Match: G3P_STRAE (Glyceraldehyde-3-phosphate dehydrogenase OS=Streptomyces arenae GN=gap PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.588e-14
Identity = 43/90 (47.78%), Postives = 55/90 (61.11%), Query Frame = 1
Query:  202 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGGLG 471
            +++ INGFGRIGRN  R    R  S LE+VA+ND G V   +HLL YDS LG F  +V       I V  + I+V++ R+P  LPWG LG
Sbjct:    3 VRIGINGFGRIGRNVFRAAAARS-SELEIVAVNDLGDVPTMAHLLAYDSILGRFPEEV-TAEPGAIRVGDRTIKVLAERDPGALPWGDLG 90          
BLAST of EY665449 vs. ExPASy Swiss-Prot
Match: G3P_BACST (Glyceraldehyde-3-phosphate dehydrogenase OS=Bacillus stearothermophilus GN=gap PE=1 SV=5)

HSP 1 Score: 77.0258 bits (188), Expect = 1.465e-13
Identity = 43/90 (47.78%), Postives = 56/90 (62.22%), Query Frame = 1
Query:  202 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGGLG 471
            +KV INGFGRIGRN  R     K+  +EVVA+ND       +HLLKYDS  G  +A+V  V  + + V+GK I V + R+P NL WG +G
Sbjct:    3 VKVGINGFGRIGRNVFRA--ALKNPDIEVVAVNDLTDANTLAHLLKYDSVHGRLDAEVS-VNGNNLVVNGKEIIVKAERDPENLAWGEIG 89          

HSP 2 Score: 72.7886 bits (177), Expect = 2.763e-12
Identity = 50/136 (36.76%), Postives = 77/136 (56.62%), Query Frame = 2
Query:  377 NQLVLMASLLMARSSRLFLTATPSISPGGDLGIDLVIEGTGVFVEREGAGKHIQAGAKKVLITAPRKG*HPNPTVVGGPMRNALQAR*TPSSEMLLGTTNCLAPFLQGSWTKSFGIIQGNPDHPHPSYTWGNQRLL 784
            N LV+    ++ ++ R      P     G++G+D+V+E TG F +RE A KH++AGAKKV+I+AP K  + + T+V G  ++    +          TTNCLAPF +    + FGI++G     H SYT  +QR+L
Sbjct:   63 NNLVVNGKEIIVKAER-----DPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVIISAPAK--NEDITIVMGVNQDKYDPKAHHVISNASCTTNCLAPFAK-VLHEQFGIVRGMMTTVH-SYT-NDQRIL 188          
BLAST of EY665449 vs. ExPASy Swiss-Prot
Match: G3P1_KLULA (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Kluyveromyces lactis GN=GAP1 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.465e-13
Identity = 46/91 (50.55%), Postives = 58/91 (63.74%), Query Frame = 1
Query:  202 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGGLG 471
            +KVAINGFGRIGR  LR    RK   LEVVA+ND    V  A+++ KYDST G ++ +V   G D + +DG  I V   ++P NLPWG LG
Sbjct:    2 VKVAINGFGRIGRLVLRIALQRK--ALEVVAVNDPFISVDYAAYMFKYDSTHGRYKGEVTTSGND-LVIDGHKIAVFQEKDPANLPWGKLG 89          
BLAST of EY665449 vs. ExPASy Swiss-Prot
Match: G3P_SCHMA (Glyceraldehyde-3-phosphate dehydrogenase OS=Schistosoma mansoni PE=2 SV=1)

HSP 1 Score: 56.6102 bits (135), Expect = 1.913e-13
Identity = 34/89 (38.20%), Postives = 52/89 (58.43%), Query Frame = 1
Query:  196 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPW 459
            ++ KV INGFGRIGR  LR       + ++VV++ND    ++   +++K DST G F  +V       + V+GK+I V   R+P N+PW
Sbjct:    2 SRAKVGINGFGRIGRLVLRA--AFLKNTVDVVSVNDPFIDLEYMVYMIKRDSTHGTFPGEVS-TENGKLKVNGKLISVHCERDPANIPW 87          

HSP 2 Score: 40.4318 bits (93), Expect = 1.913e-13
Identity = 35/98 (35.71%), Postives = 48/98 (48.98%), Query Frame = 2
Query:  443 PSISPGGDLGIDLVIEGTGVFVEREGAGKHIQAG-AKKVLITAPRKG*HPNPTVVGGPMRNALQAR*TPSSEMLLGTTNCLAPFLQGSWTKSFGIIQG 733
            P+  P    G + V+E TGVF   + A  HI+   AKKV+I+AP       P  V G   N+ +   +  S     TTNCLAP  +    K F I++G
Sbjct:   82 PANIPWDKDGAEYVVESTGVFTTIDKAQAHIKNNRAKKVIISAPSA---DAPMFVVGVNENSYEKSMSVVSNASC-TTNCLAPLAKVIHDK-FEIVEG 174          
BLAST of EY665449 vs. ExPASy Swiss-Prot
Match: G3P_CANAL (Glyceraldehyde-3-phosphate dehydrogenase OS=Candida albicans GN=TDH1 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.913e-13
Identity = 43/91 (47.25%), Postives = 58/91 (63.74%), Query Frame = 1
Query:  202 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGGLG 471
            +K+ INGFGRIGR  LR   GRKD  +EVVA+ND       A+++ KYDST G ++ +V   G D + +DG  I+V   R+P N+PWG  G
Sbjct:    3 IKIGINGFGRIGRLVLRVALGRKD--IEVVAVNDPFIAPDYAAYMFKYDSTHGRYKGEVTASG-DDLVIDGHKIKVFQERDPANIPWGKSG 90          
BLAST of EY665449 vs. ExPASy Swiss-Prot
Match: E4PD_PROMH (D-erythrose-4-phosphate dehydrogenase OS=Proteus mirabilis (strain HI4320) GN=epd PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.499e-13
Identity = 57/168 (33.93%), Postives = 81/168 (48.21%), Query Frame = 1
Query:  202 LKVAINGFGRIGRNFLRC-WHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGGLG---HRPCD*RDRSVCRKRGCGQAHSGWCQESTYYSPPERVTSQPYRCWG-------------SNAECFTSQMNPIIR 654
            ++VAINGFGRIGRN LR  +   K + + VVAIN+       +HLLKYDS+ G F  D++ V  D + V    I++  + +  +LPWG LG      C      V   R  G+AH     +   +S P  +       +G             SNA C T+ + PII+
Sbjct:    3 IRVAINGFGRIGRNVLRALYESGKRAEISVVAINELADATGIAHLLKYDSSHGRFAWDIR-VNNDLLQVGDDAIRLFHHADIADLPWGELGIDVVLDCS----GVYGSRADGEAHIAQGAKKVLFSHPGTIDLDATVVFGVNQHELKKQHRIVSNASCTTNCIIPIIK 165          
BLAST of EY665449 vs. ExPASy Swiss-Prot
Match: G3P_YARLI (Glyceraldehyde-3-phosphate dehydrogenase OS=Yarrowia lipolytica GN=GPD PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.263e-13
Identity = 60/171 (35.09%), Postives = 82/171 (47.95%), Query Frame = 1
Query:  202 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGGLGHRPCD*RDRSVCRKRGCGQAHSGWCQESTYYSPPERVTSQPYRCWGSNAECFTSQMNPIIRNASWHNQLPCPLSSRVLDQ 711
            +KV INGFGRIGR  LR  +  K+  +EVVA+ND     + A+++ KYDST G F+  V+     G+ +DGK IQV   R+P N+PWG  G          V   +    AH     +    S P      P    G N + +   M  +I NAS       PL+  V D+
Sbjct:    3 IKVGINGFGRIGRIVLR--NALKNPEVEVVAVNDPFIDTEYAAYMFKYDSTHGRFKGKVE-AKDGGLIIDGKHIQVFGERDPSNIPWGKAG-ADYVVESTGVFTGKEAASAHLKGGAKKVIISAPS--GDAPMFVVGVNLDAYKPDMT-VISNASCTTNCLAPLAKVVNDK 166          
The following BLAST results are available for this feature:
BLAST of EY665449 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 147
Match NameE-valueIdentityDescription
E4PD_VIBC32.357e-1449.09D-erythrose-4-phosphate dehydrogenase OS=Vibrio ch... [more]
E4PD_VIBPA3.978e-1450.91D-erythrose-4-phosphate dehydrogenase OS=Vibrio pa... [more]
G3P_PICCI6.576e-1435.84Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia... [more]
G3P_STRAE8.588e-1447.78Glyceraldehyde-3-phosphate dehydrogenase OS=Strept... [more]
G3P_BACST1.465e-1347.78Glyceraldehyde-3-phosphate dehydrogenase OS=Bacill... [more]
G3P1_KLULA1.465e-1350.55Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Kluy... [more]
G3P_SCHMA1.913e-1338.20Glyceraldehyde-3-phosphate dehydrogenase OS=Schist... [more]
G3P_CANAL1.913e-1347.25Glyceraldehyde-3-phosphate dehydrogenase OS=Candid... [more]
E4PD_PROMH2.499e-1333.93D-erythrose-4-phosphate dehydrogenase OS=Proteus m... [more]
G3P_YARLI3.263e-1335.09Glyceraldehyde-3-phosphate dehydrogenase OS=Yarrow... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-102-002-C01-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665449 ID=EY665449; Name=EY665449; organism=Citrus sinensis; type=EST; length=850bp
GCTTCGGCCACTCTCTCTGTATCCAAATCAGCTCTTCAGGGAAATGGTAA
GGGATTCTCACAATTCTCAGGTCTACGCAACTCTGCAAGCCTTCCTTTTG
GCAGGAAATCTTCTGATGACTTCCATTCAGTCATTGCTCTCCAGACCTCT
GCTTTAGGAAGCAGCAGCAGCGGGTACAGGAAGGTTGCTGCTCAGGCAAA
GCTGAAGGTTGCAATCAATGGGTTTGGTAGAATTGGTAGGAACTTCTTGA
GGTGCTGGCACGGCCGCAAGGACTCTCCACTTGAAGTCGTTGCCATCAAT
GACACCGGAGGTGTCAAGCAGGCCTCTCACCTCCTCAAGTACGACTCCAC
CCTTGGCATCTTTGAAGCCGATGTTAAACCAGTTGGTACTGATGGCATCT
CTGTTGATGGCAAGGTCATCCAGGTTGTTTCTAACCGCAACCCCGTCAAT
CTCCCCTGGGGGGGACTTGGGCATCGACCTTGTGATTGAAGGGACAGGAG
TGTTTGTAGAAAGAGAGGGTGCGGGCAAGCACATTCAGGCTGGTGCCAAG
AAAGTACTTATTACAGCCCCCCGGAAAGGGTGACATCCCAACCCTACCGT
TGTTGGGGGTCCAATGCGGAATGCTTTACAAGCCAGATGAACCCCATCAT
CAGAAATGCTTCTTGGCACAACCAACTGCCTTGCCCCCTTTCTTCAAGGG
TCTTGGACCAAAAGCTTTGGCATTATTCAGGGAAACCCTGACCACCCACA
CCCCTCCTACACTTGGGGGAACCAAAGGTTACTCCCAAGCTAACCCACCG
GGAACCTAGGGGGAAAAAAAAAAAGCTGCAATCCAAATGTGCCCCAAAAT
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