EY665447

Overview
NameEY665447
Unique NameEY665447
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length857
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665447 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.654e-14
Identity = 45/106 (42.45%), Postives = 60/106 (56.60%), Query Frame = 1
Query:  223 AGTRSVSVSAAAA------DPNRPLWF-PGST-PPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELL-TKLGI-LNTPSWYTAGEQ 510
            AGT+    + A +       P+R  W  P ST  P +L G  PGD+G+D  GL +DPET +   + E++H RWA+LGA GI  PELL T  G+    P W+ AG Q
Sbjct:   22 AGTKQTKAAPAKSAGIEWYGPDRAKWLGPFSTNTPAYLTGEFPGDYGWDTAGLSADPETFKKYRELEVIHARWALLGALGILTPELLSTYAGVKFGEPVWFKAGAQ 127          
BLAST of EY665447 vs. ExPASy Swiss-Prot
Match: CB22_ORYSJ (Chlorophyll a-b binding protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB2R PE=2 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 6.654e-14
Identity = 35/72 (48.61%), Postives = 45/72 (62.50%), Query Frame = 1
Query:  298 PPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGEQ 510
            PP +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PELL + G+      W+ AG Q
Sbjct:   61 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQ 132          
BLAST of EY665447 vs. ExPASy Swiss-Prot
Match: CB21_ORYSJ (Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB1R PE=2 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 6.654e-14
Identity = 35/72 (48.61%), Postives = 45/72 (62.50%), Query Frame = 1
Query:  298 PPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGEQ 510
            PP +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PELL + G+      W+ AG Q
Sbjct:   65 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQ 136          
BLAST of EY665447 vs. ExPASy Swiss-Prot
Match: CB24_PETSP (Chlorophyll a-b binding protein 25, chloroplastic OS=Petunia sp. GN=CAB25 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.691e-14
Identity = 34/71 (47.89%), Postives = 44/71 (61.97%), Query Frame = 1
Query:  301 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGEQ 510
            P +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PEL  + G+      W+ AG Q
Sbjct:   67 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGVKFGEAVWFKAGSQ 137          
BLAST of EY665447 vs. ExPASy Swiss-Prot
Match: CB2_PHYPA (Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.135e-13
Identity = 38/77 (49.35%), Postives = 47/77 (61.04%), Query Frame = 1
Query:  283 FPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGEQ 510
            F G TP  +L+G   GD+G+D  GL SDPET   N + E++H RWAMLGA G   PELL K G+      W+ AG Q
Sbjct:   64 FSGETP-SYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVKFGEAVWFKAGAQ 139          
BLAST of EY665447 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.482e-13
Identity = 37/85 (43.53%), Postives = 50/85 (58.82%), Query Frame = 1
Query:  265 PNRPLWFP--GSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGEQ 510
            P+RP +        P +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PE+L+K G+      W+ AG Q
Sbjct:   50 PDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQ 134          
BLAST of EY665447 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.482e-13
Identity = 37/85 (43.53%), Postives = 50/85 (58.82%), Query Frame = 1
Query:  265 PNRPLWFP--GSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGEQ 510
            P+RP +        P +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PE+L+K G+      W+ AG Q
Sbjct:   50 PDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQ 134          
BLAST of EY665447 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.482e-13
Identity = 37/85 (43.53%), Postives = 49/85 (57.65%), Query Frame = 1
Query:  265 PNRPLWFP--GSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGEQ 510
            P+RP +        P +L G  PGD+G+D   + +DPET   N + E++HCRWAMLGA G   PELL K G+      W+ AG Q
Sbjct:   53 PDRPKYLGPFSEGTPSYLTGEFPGDYGWDTAAVSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGLKFGEAVWFKAGAQ 137          
BLAST of EY665447 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.482e-13
Identity = 35/71 (49.30%), Postives = 45/71 (63.38%), Query Frame = 1
Query:  301 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGEQ 510
            P +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PELL+K G+      W+ AG Q
Sbjct:   65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCIFPELLSKNGVQFGEAVWFKAGAQ 135          
BLAST of EY665447 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.936e-13
Identity = 40/85 (47.06%), Postives = 51/85 (60.00%), Query Frame = 1
Query:  265 PNRPLWF-PGSTP-PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGEQ 510
            P+RP +  P S   P +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PELL K G+      W+ AG Q
Sbjct:   52 PDRPKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPELLEKNGVKFGEAVWFKAGSQ 136          
The following BLAST results are available for this feature:
BLAST of EY665447 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
CB2_CHLMO6.654e-1442.45Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB22_ORYSJ6.654e-1448.61Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_ORYSJ6.654e-1448.61Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB24_PETSP8.691e-1447.89Chlorophyll a-b binding protein 25, chloroplastic ... [more]
CB2_PHYPA1.135e-1349.35Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_ORYSJ1.482e-1343.53Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_ORYSI1.482e-1343.53Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_PINTH1.482e-1343.53Chlorophyll a-b binding protein type I, chloroplas... [more]
CB21_LEMGI1.482e-1349.30Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB215_PEA1.936e-1347.06Chlorophyll a-b binding protein 215, chloroplastic... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-102-002-B10-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665447 ID=EY665447; Name=EY665447; organism=Citrus sinensis; type=EST; length=857bp
CTGTTCACTTCCAATTGTATCCTTTTTCACACGCACACAAACGCCAGTCA
TAATTTTGCTGACATCCTTTGCCTGGTAGTAAAAATGGCTTCCGTTTGTG
CTTCCCCTGCTGTTGCAGCCATCTCATCCCCCAGTTCTCAGAAGAGTAGA
TCAGTTGCGGGAGCAACAAAGGCTTCTTTCCTTGGTGGGAAGAAGCTGAA
ATTGAGAAAAAACGGAGCAACAGCGGGAACACGATCGGTTTCAGTGAGTG
CGGCTGCAGCTGATCCTAACAGGCCTCTCTGGTTCCCAGGCAGCACTCCT
CCTGAATGGCTCGATGGTAGCCTCCCCGGAGACTTCGGCTTCGATCCTCT
TGGTCTTGGATCTGATCCTGAGACGCTGAGATGGAACGTGCAATCAGAAA
TTGTGCACTGCAGATGGGCAATGTTAGGAGCTGCAGGAATTTTCATTCCG
GAATTGTTAACAAAACTTGGAATCCTCAACACTCCATCCTGGTACACAGC
TGGGGAGCAAGAGTAACTTCACAGACACCACCACCCTGTTCATTGTTGAG
ATGATATTCATAGGCTGGGGAGAGGGGAAGAGGGGGGGCCGACATTATAA
AGCCAGGCTGTGTGAACACTGGACCCGATCTTCCCCAAAAACAAGCTCAC
CGGCACCGAATGTTGGGTAACCCAGGGGGGGCTTTGGTTTGACCCCATTG
GGTTGGGGATCCGGGTTCCCCCGAAAAAGGTAATGGAGCTTGAGGACTAA
GGGAGAATCAAAAAAGGGAAAAATTGGGTTATTGTGGGTGGGGATGGGGG
GGCTTGGGTTCCCACACAATTAAACTTGGGGCCCCGGGCCCCCTTTGAAA
ATTCTCA
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