EY665447

Overview
NameEY665447
Unique NameEY665447
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length857
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665447 vs. ExPASy Swiss-Prot
Match: CB21_ARATH (Chlorophyll a-b binding protein 165/180, chloroplastic OS=Arabidopsis thaliana GN=LHCP-A PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.313e-13
Identity = 34/71 (47.89%), Postives = 44/71 (61.97%), Query Frame = 1
Query:  301 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGEQ 510
            P +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PELL + G+      W+ AG Q
Sbjct:   67 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQ 137          
BLAST of EY665447 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.357e-13
Identity = 38/87 (43.68%), Postives = 49/87 (56.32%), Query Frame = 1
Query:  265 PNRPLWFPG-----STPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPS--WYTAG 504
            P+R ++ P      S  PE+L+G + GD+G+DP GLG  PE        E++H RWAMLGAAG  IPE L K G    P   W+  G
Sbjct:   65 PDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTG 151          
BLAST of EY665447 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.255e-12
Identity = 42/105 (40.00%), Postives = 60/105 (57.14%), Query Frame = 1
Query:  220 TAGTRSVSVSAAAAD---PNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTK-LGI-LNTPSWYTAGEQ 510
            T   R  +V  AA +   P+R  +   F  +  PE+L G  PGD+G+D  GL +DP+T     + E++H RWA+LGA GI  PELL++  G+    P W+ AG Q
Sbjct:   18 TRQQRMATVPRAAVEFYGPDRAKFLGPFSENDTPEYLTGEFPGDYGWDTAGLSADPQTFARYREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAGAQ 122          
BLAST of EY665447 vs. ExPASy Swiss-Prot
Match: CB22_HORVU (Chlorophyll a-b binding protein 2, chloroplastic OS=Hordeum vulgare GN=CAB2 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.255e-12
Identity = 39/98 (39.80%), Postives = 51/98 (52.04%), Query Frame = 1
Query:  220 TAGTRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGEQ 510
            TA T+ V       D  + L       P +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PELL + G+      W+  G Q
Sbjct:   38 TAATKKVGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWAMLGALGCVFPELLARNGVKFGEAVWFKKGSQ 135          
BLAST of EY665447 vs. ExPASy Swiss-Prot
Match: CB21_PETSP (Chlorophyll a-b binding protein 13, chloroplastic OS=Petunia sp. GN=CAB13 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.639e-12
Identity = 32/71 (45.07%), Postives = 42/71 (59.15%), Query Frame = 1
Query:  301 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGEQ 510
            P +L G  PGD+G+D  GL +DP T   N + E++HCRW MLGA G   PEL  + G+      W+ AG Q
Sbjct:   67 PSYLTGEFPGDYGWDTAGLSADPATFAKNRKLEVIHCRWTMLGALGCVFPELFARNGVKFGEAVWFKAGSQ 137          
BLAST of EY665447 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.796e-12
Identity = 32/73 (43.84%), Postives = 44/73 (60.27%), Query Frame = 1
Query:  295 TPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGEQ 510
            +PP +L G  PGD+G+D  GL +DPET   N + E++HCRWA+    G   PELL + G+      W+ AG Q
Sbjct:   63 SPPSYLTGEFPGDYGWDTEGLSADPETFAKNRELEVIHCRWAIAVGLGCVFPELLARNGVKFGEGVWFKAGSQ 135          
BLAST of EY665447 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.769e-12
Identity = 34/72 (47.22%), Postives = 45/72 (62.50%), Query Frame = 1
Query:  301 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTK-LGI-LNTPSWYTAGEQ 510
            P +L+G  PGD+G+D  GL +DPE    N   E++H RWAMLGA G   PE+L K +G+    P W+ AG Q
Sbjct:   67 PSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCVFPEVLQKWVGVEFKEPVWFKAGSQ 138          
BLAST of EY665447 vs. ExPASy Swiss-Prot
Match: LH18_EUGGR (Light-harvesting complex I LH38 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.228e-12
Identity = 34/81 (41.98%), Postives = 43/81 (53.09%), Query Frame = 1
Query:  217 ATAGTRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELL 459
            A   T     +++ A   R LWFP   PP +L G   GD GFDP GL +DP T      +E+ HCR +ML   G  +PELL
Sbjct:  353 ANITTNLAMFASSGAKEERELWFPNIVPPRYLTGEAYGDKGFDPAGLAADPVTFERMQVAEVFHCRLSMLALVGCLVPELL 433          

HSP 2 Score: 70.0922 bits (170), Expect = 1.812e-11
Identity = 35/80 (43.75%), Postives = 45/80 (56.25%), Query Frame = 1
Query:  268 NRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGE 507
            + PLWFP +  P WL+G   GD GFDP GL +DP+T      +E+ H R AML   G  +P+ L K GI     WY A +
Sbjct:    1 SHPLWFPNTLAPSWLNGEYYGDRGFDPAGLAADPDTFERMRIAEVYHGRLAMLAVVGALVPDYLGK-GI-----WYEAAQ 74          
BLAST of EY665447 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.388e-11
Identity = 33/72 (45.83%), Postives = 44/72 (61.11%), Query Frame = 1
Query:  301 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILN--TPSWYTAGEQ 510
            P +L+G  PGD+G+D  GL +DPE    N   E++H RWAMLGA G   PE+L K   ++   P W+ AG Q
Sbjct:   64 PSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCIFPEVLEKWVKVDFKEPVWFKAGSQ 135          
The following BLAST results are available for this feature:
BLAST of EY665447 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
CB21_ARATH4.313e-1347.89Chlorophyll a-b binding protein 165/180, chloropla... [more]
CB26_ARATH7.357e-1343.68Chlorophyll a-b binding protein CP26, chloroplasti... [more]
CB2_DUNTE1.255e-1240.00Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB22_HORVU1.255e-1239.80Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_PETSP1.639e-1245.07Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB48_MAIZE2.796e-1243.84Chlorophyll a-b binding protein 48, chloroplastic ... [more]
CB23_HORVU4.769e-1247.22Chlorophyll a-b binding protein of LHCII type III,... [more]
LH18_EUGGR6.228e-1241.98Light-harvesting complex I LH38 proteins (Fragment... [more]
CB23_SOLLC1.388e-1145.83Chlorophyll a-b binding protein 13, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-102-002-B10-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665447 ID=EY665447; Name=EY665447; organism=Citrus sinensis; type=EST; length=857bp
CTGTTCACTTCCAATTGTATCCTTTTTCACACGCACACAAACGCCAGTCA
TAATTTTGCTGACATCCTTTGCCTGGTAGTAAAAATGGCTTCCGTTTGTG
CTTCCCCTGCTGTTGCAGCCATCTCATCCCCCAGTTCTCAGAAGAGTAGA
TCAGTTGCGGGAGCAACAAAGGCTTCTTTCCTTGGTGGGAAGAAGCTGAA
ATTGAGAAAAAACGGAGCAACAGCGGGAACACGATCGGTTTCAGTGAGTG
CGGCTGCAGCTGATCCTAACAGGCCTCTCTGGTTCCCAGGCAGCACTCCT
CCTGAATGGCTCGATGGTAGCCTCCCCGGAGACTTCGGCTTCGATCCTCT
TGGTCTTGGATCTGATCCTGAGACGCTGAGATGGAACGTGCAATCAGAAA
TTGTGCACTGCAGATGGGCAATGTTAGGAGCTGCAGGAATTTTCATTCCG
GAATTGTTAACAAAACTTGGAATCCTCAACACTCCATCCTGGTACACAGC
TGGGGAGCAAGAGTAACTTCACAGACACCACCACCCTGTTCATTGTTGAG
ATGATATTCATAGGCTGGGGAGAGGGGAAGAGGGGGGGCCGACATTATAA
AGCCAGGCTGTGTGAACACTGGACCCGATCTTCCCCAAAAACAAGCTCAC
CGGCACCGAATGTTGGGTAACCCAGGGGGGGCTTTGGTTTGACCCCATTG
GGTTGGGGATCCGGGTTCCCCCGAAAAAGGTAATGGAGCTTGAGGACTAA
GGGAGAATCAAAAAAGGGAAAAATTGGGTTATTGTGGGTGGGGATGGGGG
GGCTTGGGTTCCCACACAATTAAACTTGGGGCCCCGGGCCCCCTTTGAAA
ATTCTCA
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