CX043688

Overview
NameCX043688
Unique NameCX043688
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length598
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043688 vs. ExPASy Swiss-Prot
Match: ERF15_ARATH (Ethylene-responsive transcription factor ERF015 OS=Arabidopsis thaliana GN=ERF015 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.329e-13
Identity = 36/58 (62.07%), Postives = 42/58 (72.41%), Query Frame = -3
Query:  225 YRGVRRRPWGKFAAEIRDPKKNGARVWLGTYDTPEGAAFAYDRAAFKMRGSKAKLNFP 398
            YRGVR+R WGK+ +EIR PK  G R+WLG+YD PE AA AYD A F +RG K   NFP
Sbjct:   27 YRGVRKRSWGKWVSEIRVPK-TGRRIWLGSYDAPEKAARAYDAALFCIRGEKGVYNFP 83          
BLAST of CX043688 vs. ExPASy Swiss-Prot
Match: ERF18_ARATH (Ethylene-responsive transcription factor ERF018 OS=Arabidopsis thaliana GN=ERF018 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.736e-13
Identity = 39/81 (48.15%), Postives = 51/81 (62.96%), Query Frame = -3
Query:  180 RGTHVRMQYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYDTPEGAAFAYDRAAFKMRGSKAKLNFPHLIGSNVEPPVRVTK 422
            R T ++ +Y+GVR+R WGK+ +EIR P     R+WLG+YDTPE AA A+D A F +RG  A  NFP     N  P + V K
Sbjct:   13 RNTAMQSKYKGVRKRKWGKWVSEIRLPHSR-ERIWLGSYDTPEKAARAFDAAQFCLRGGDANFNFP-----NNPPSISVEK 87          
BLAST of CX043688 vs. ExPASy Swiss-Prot
Match: DREB3_ARATH (Dehydration-responsive element-binding protein 3 OS=Arabidopsis thaliana GN=DREB3 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.736e-13
Identity = 37/67 (55.22%), Postives = 48/67 (71.64%), Query Frame = -3
Query:  198 YRGVRRRPWGKFAAEIRDPKKNGARVWLGTYDTPEGAAFAYDRAAFKMRGSKAKLNFPHLIGSNVEP 398
            YRGVR R WGK+ +EIR+P+K  +R+WLGT+ TPE AA A+D AA  ++G+ A LNFP L  S   P
Sbjct:   51 YRGVRMRNWGKWVSEIREPRKK-SRIWLGTFPTPEMAARAHDVAALSIKGTAAILNFPELADSFPRP 116          
BLAST of CX043688 vs. ExPASy Swiss-Prot
Match: ERF39_ARATH (Ethylene-responsive transcription factor ERF039 OS=Arabidopsis thaliana GN=ERF039 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.267e-13
Identity = 35/68 (51.47%), Postives = 48/68 (70.59%), Query Frame = -3
Query:  219 RGTHVRMQYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYDTPEGAAFAYDRAAFKMRGSKAKLNFPHL 422
            +G   +  +RGVR R WGK+ +EIR+P+K  +R+WLGT+ TPE AA A+D AA  ++G  A LNFP L
Sbjct:   32 KGVSKQPNFRGVRMRQWGKWVSEIREPRKK-SRIWLGTFSTPEMAARAHDVAALAIKGGSAHLNFPEL 98          
BLAST of CX043688 vs. ExPASy Swiss-Prot
Match: ERF34_ARATH (Ethylene-responsive transcription factor ERF034 OS=Arabidopsis thaliana GN=ERF034 PE=2 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 2.267e-13
Identity = 37/67 (55.22%), Postives = 47/67 (70.15%), Query Frame = -3
Query:  198 YRGVRRRPWGKFAAEIRDPKKNGARVWLGTYDTPEGAAFAYDRAAFKMRGSKAKLNFPHLIGSNVEP 398
            YRGVR R WGK+ +EIR+P+K  +R+WLGTY T E AA A+D AA  ++G+ A LNFP L G    P
Sbjct:  100 YRGVRMRSWGKWVSEIREPRKK-SRIWLGTYPTAEMAARAHDVAALAIKGTTAYLNFPKLAGELPRP 165          
BLAST of CX043688 vs. ExPASy Swiss-Prot
Match: ERF23_ARATH (Ethylene-responsive transcription factor ERF023 OS=Arabidopsis thaliana GN=ERF023 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.267e-13
Identity = 35/61 (57.38%), Postives = 47/61 (77.05%), Query Frame = -3
Query:  216 YRGVRRRPWGKFAAEIRDPKKNGARVWLGTYDTPEGAAFAYDRAAFKMRGSKAKLNFPHLI 398
            Y GVR+R WGK+ +EIR+P+K  +R+WLG++  PE AA AYD AAF ++G KA+LNFP  I
Sbjct:   45 YHGVRKRRWGKWVSEIREPRKK-SRIWLGSFPVPEMAAKAYDVAAFCLKGRKAQLNFPEEI 104          
BLAST of CX043688 vs. ExPASy Swiss-Prot
Match: DRE2D_ARATH (Dehydration-responsive element-binding protein 2D OS=Arabidopsis thaliana GN=DREB2D PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.267e-13
Identity = 36/63 (57.14%), Postives = 46/63 (73.02%), Query Frame = -3
Query:  210 YRGVRRRPWGKFAAEIRDPKKNGARVWLGTYDTPEGAAFAYDRAAFKMRGSKAKLNFPHLIGS 398
            Y+GVR+R WGK+ AEIR+P + GAR+WLGT+DT   AA AYD AA K+ G +A LN P  + S
Sbjct:   42 YKGVRQRTWGKWVAEIREPNR-GARLWLGTFDTSREAALAYDSAARKLYGPEAHLNLPESLRS 103          
BLAST of CX043688 vs. ExPASy Swiss-Prot
Match: CRF3_ARATH (Ethylene-responsive transcription factor CRF3 OS=Arabidopsis thaliana GN=CRF3 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.267e-13
Identity = 34/58 (58.62%), Postives = 45/58 (77.59%), Query Frame = -3
Query:  228 QYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYDTPEGAAFAYDRAAFKMRGSKAKLNF 401
            ++RGVR+RPWGK+AAEIRDP++   R+WLGT++T E AA  YD AA ++RG  A  NF
Sbjct:  124 KFRGVRQRPWGKWAAEIRDPEQR-RRIWLGTFETAEEAAVVYDNAAIRLRGPDALTNF 180          
BLAST of CX043688 vs. ExPASy Swiss-Prot
Match: ERF87_ARATH (Ethylene-responsive transcription factor ERF087 OS=Arabidopsis thaliana GN=ERF087 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.868e-13
Identity = 36/59 (61.02%), Postives = 44/59 (74.58%), Query Frame = -3
Query:  228 MQYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYDTPEGAAFAYDRAAFKMRGSKAKLNF 404
            ++Y GVRRRPWG++AAEIR+P     R WLGT+DT E AA AYDRAA  +RG  A+ NF
Sbjct:   37 IKYVGVRRRPWGRYAAEIRNPTTK-ERYWLGTFDTAEEAALAYDRAARSIRGLTARTNF 94          
BLAST of CX043688 vs. ExPASy Swiss-Prot
Match: ERF17_ARATH (Ethylene-responsive transcription factor ERF017 OS=Arabidopsis thaliana GN=ERF017 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.597e-13
Identity = 33/62 (53.23%), Postives = 46/62 (74.19%), Query Frame = -3
Query:  225 VRMQYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYDTPEGAAFAYDRAAFKMRGSKAKLNFP 410
            ++ +Y+GVR+R WGK+ +EIR P     R+WLG+YDTPE AA A+D A + +RG+ AK NFP
Sbjct:    8 MQSKYKGVRKRKWGKWVSEIRLPNSR-ERIWLGSYDTPEKAARAFDAALYCLRGNNAKFNFP 68          
The following BLAST results are available for this feature:
BLAST of CX043688 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110
Match NameE-valueIdentityDescription
ERF15_ARATH1.329e-1362.07Ethylene-responsive transcription factor ERF015 OS... [more]
ERF18_ARATH1.736e-1348.15Ethylene-responsive transcription factor ERF018 OS... [more]
DREB3_ARATH1.736e-1355.22Dehydration-responsive element-binding protein 3 O... [more]
ERF39_ARATH2.267e-1351.47Ethylene-responsive transcription factor ERF039 OS... [more]
ERF34_ARATH2.267e-1355.22Ethylene-responsive transcription factor ERF034 OS... [more]
ERF23_ARATH2.267e-1357.38Ethylene-responsive transcription factor ERF023 OS... [more]
DRE2D_ARATH2.267e-1357.14Dehydration-responsive element-binding protein 2D ... [more]
CRF3_ARATH2.267e-1358.62Ethylene-responsive transcription factor CRF3 OS=A... [more]
ERF87_ARATH3.868e-1361.02Ethylene-responsive transcription factor ERF087 OS... [more]
ERF17_ARATH6.597e-1353.23Ethylene-responsive transcription factor ERF017 OS... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS07_12G10_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-12G10-M20-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043688 ID=CX043688; Name=CX043688; organism=Citrus sinensis; type=EST; length=598bp
GATTTGAAAAGAAATTATTAAGAAGAAGTACGATTACATGTTATGTAAAT
TTGAATCTAAGAAAATTAAGCAAAGCAGCTCTGATACTAATAATTAATTC
ACCCGGGTCTAAAGGACACAACGGATGATGATGAAGAAAGAGACGAAGAA
GAGGAAGGAGGCTCTGGAGACCCACGCTTCTTGGTAACCCTAACCGGGGG
CTCAACATTTGAGCCAATGAGGTGAGGAAAATTGAGCTTAGCCTTGGAGC
CTCGCATCTTGAAAGCGGCTCTATCATAAGCAAATGCTGCACCCTCAGGG
GTATCATAGGTGCCCAGCCAAACTCTTGCCCCATTCTTCTTAGGGTCCCT
TATCTCCGCAGCAAACTTCCCCCACGGCCTCCTCCTCACGCCTCTATACT
GCATCCTCACGTGAGTCCCACGTGCCACATCCATCTGTGGAGTTGGAAGA
GGAGGAGGATGAGGAGGAGAAGTCATACTCGTATCAATATTTGCTATTGC
ACTTCCNATATCATTATTACGACCAAGCTGATCATCAAACGAAATCCACC
CTCCGTTGACGCCGTCATGTAAGGAGGAGTGCGAGCTAGAGCTAACCC
back to top