EY665438
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of EY665438 vs. ExPASy Swiss-Prot
Match: RBS1_AMAHP (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Amaranthus hypochondriacus GN=RBCS1 PE=2 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 2.657e-21 Identity = 59/122 (48.36%), Postives = 68/122 (55.74%), Query Frame = 3 Query: 30 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFACLN*RXXXXXXXXXXXXXXXXACMLQVWPPTGLKKFETLSYLPPLSD 395 MASSM+S+A +AT + AQASMVAPF GLKS + FP TKK++ND +S+ SNGGRVQCM QVWPP G KKFETLSYLPPLSD Sbjct: 1 MASSMLSNAAMATTAATAGAQASMVAPFNGLKSFATFPITKKSSNDFSSLPSNGGRVQCM----------------------------------------QVWPPVGKKKFETLSYLPPLSD 82
BLAST of EY665438 vs. ExPASy Swiss-Prot
Match: RBS_SILPR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Silene pratensis GN=RBCS PE=2 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 3.470e-21 Identity = 65/147 (44.22%), Postives = 83/147 (56.46%), Query Frame = 3 Query: 36 SSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFACLN*RXXXXXXXXXXXXXXXXACMLQVWPPTGLKKFETLSYLPPLSDESFAQGKSITLIPPAGIPGWKFEVGGA 476 +S++S+A V TA+ A AQA+MVAPF+GLKS+SAFP ++K+N DITS+A+NGGRV CM QVWPP LKKFETLSYLP LS+ES + + LI +P +FEVG A Sbjct: 2 ASLMSNAAVVTASTA--AQANMVAPFSGLKSTSAFPVSRKSNVDITSLATNGGRVNCM----------------------------------------QVWPPRNLKKFETLSYLPTLSEESLLKEINYLLI-KGWVPCLEFEVGPA 105
BLAST of EY665438 vs. ExPASy Swiss-Prot
Match: RBSC_SOLTU (Ribulose bisphosphate carboxylase small chain 2C, chloroplastic OS=Solanum tuberosum GN=RBCS-2C PE=3 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 4.532e-21 Identity = 66/150 (44.00%), Postives = 81/150 (54.00%), Query Frame = 3 Query: 30 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFACLN*RXXXXXXXXXXXXXXXXACMLQVWPPTGLKKFETLSYLPPLSDESFAQGKSITLIPPAGIPGWKFEVGGAF 479 MASS++SSA VAT R + AQASMVAPFTGLKS+++FP ++K N DITSIASNGGRV+CM QVWPP +KK+ETLSYLP LSDE + L+ +P +FE F Sbjct: 1 MASSVMSSAAVAT--RGNGAQASMVAPFTGLKSTASFPVSRKQNLDITSIASNGGRVRCM----------------------------------------QVWPPINMKKYETLSYLPDLSDEQLLKEVEY-LLKNGWVPCLEFETEHGF 107
BLAST of EY665438 vs. ExPASy Swiss-Prot
Match: RBSA_SOLTU (Ribulose bisphosphate carboxylase small chain 2A, chloroplastic OS=Solanum tuberosum GN=RBCS-2A PE=3 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 4.532e-21 Identity = 66/150 (44.00%), Postives = 81/150 (54.00%), Query Frame = 3 Query: 30 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFACLN*RXXXXXXXXXXXXXXXXACMLQVWPPTGLKKFETLSYLPPLSDESFAQGKSITLIPPAGIPGWKFEVGGAF 479 MASS++SSA VAT R + AQASMVAPFTGLKS+++FP ++K N DITSIASNGGRV+CM QVWPP +KK+ETLSYLP LSDE + L+ +P +FE F Sbjct: 1 MASSVMSSAAVAT--RGNGAQASMVAPFTGLKSAASFPVSRKQNLDITSIASNGGRVRCM----------------------------------------QVWPPINMKKYETLSYLPDLSDEQLLKEVEY-LLKNGWVPCLEFETEHGF 107
BLAST of EY665438 vs. ExPASy Swiss-Prot
Match: RBS_STELP (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Stellaria longipes GN=RBCS PE=2 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 5.919e-21 Identity = 66/150 (44.00%), Postives = 82/150 (54.67%), Query Frame = 3 Query: 30 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFACLN*RXXXXXXXXXXXXXXXXACMLQVWPPTGLKKFETLSYLPPLSDESFAQGKSITLIPPAGIPGWKFEVGGAF 479 MASS++SSA VAT R++ AQASMVAPFTGLKS+++FP ++KTN DITSIASNGGRV+CM QVWPP +KK+ETLSYLP LS E + L+ +P +FE F Sbjct: 1 MASSIMSSAAVAT--RSNGAQASMVAPFTGLKSNASFPVSRKTNLDITSIASNGGRVRCM----------------------------------------QVWPPINMKKYETLSYLPDLSSEQLL-SEIEYLLKNGWVPCLEFETEHGF 107
BLAST of EY665438 vs. ExPASy Swiss-Prot
Match: RBS3B_SOLLC (Ribulose bisphosphate carboxylase small chain 3B, chloroplastic OS=Solanum lycopersicum GN=RBCS-3B PE=3 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 5.919e-21 Identity = 66/150 (44.00%), Postives = 80/150 (53.33%), Query Frame = 3 Query: 30 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFACLN*RXXXXXXXXXXXXXXXXACMLQVWPPTGLKKFETLSYLPPLSDESFAQGKSITLIPPAGIPGWKFEVGGAF 479 MASS++SSA VAT R + AQASMVAPFTGLKS+++FP ++K N DITSIASNGGRV CM QVWPP +KK+ETLSYLP LSDE + L+ +P +FE F Sbjct: 1 MASSIVSSAAVAT--RGNGAQASMVAPFTGLKSTASFPVSRKQNLDITSIASNGGRVSCM----------------------------------------QVWPPINMKKYETLSYLPDLSDEQLL-SEIEYLLKNGWVPCLEFETEHGF 107
BLAST of EY665438 vs. ExPASy Swiss-Prot
Match: RBS1_PETHY (Ribulose bisphosphate carboxylase small chain SSU8, chloroplastic OS=Petunia hybrida GN=RBCS PE=3 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 5.919e-21 Identity = 67/150 (44.67%), Postives = 80/150 (53.33%), Query Frame = 3 Query: 30 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFACLN*RXXXXXXXXXXXXXXXXACMLQVWPPTGLKKFETLSYLPPLSDESFAQGKSITLIPPAGIPGWKFEVGGAF 479 MASS+ISSA VAT R ++AQASMVAPF GLKS+ +FP + K N DITSIASNGGRVQCM QVWPP G KK+ETLSYLP L+DE + + L+ +P +FE F Sbjct: 1 MASSVISSAAVAT--RTNVAQASMVAPFNGLKSAVSFPVSSKQNLDITSIASNGGRVQCM----------------------------------------QVWPPYGKKKYETLSYLPDLTDEQLLK-EIEYLLNKGWVPCLEFETEHGF 107
BLAST of EY665438 vs. ExPASy Swiss-Prot
Match: RBS2_MESCR (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-2 PE=2 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 7.731e-21 Identity = 64/122 (52.46%), Postives = 70/122 (57.38%), Query Frame = 3 Query: 36 SSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFACLN*RXXXXXXXXXXXXXXXXACMLQVWPPTGLKKFETLSYLPPLSDES 401 +SM+S+A V R + AQASMVAPFTGLKS SAFP TKK +NDITSIASNGGRVQCM QVWPP G KKFETLSYLPPLS+ES Sbjct: 2 ASMMSNAAVV--GRTTPAQASMVAPFTGLKSVSAFPVTKK-SNDITSIASNGGRVQCM----------------------------------------QVWPPLGKKKFETLSYLPPLSEES 80
BLAST of EY665438 vs. ExPASy Swiss-Prot
Match: RBS_TOBAC (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Nicotiana tabacum GN=RBCS PE=1 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 1.010e-20 Identity = 65/150 (43.33%), Postives = 80/150 (53.33%), Query Frame = 3 Query: 30 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFACLN*RXXXXXXXXXXXXXXXXACMLQVWPPTGLKKFETLSYLPPLSDESFAQGKSITLIPPAGIPGWKFEVGGAF 479 MASS++SSA VAT R+++AQA+MVAPFTGLKS+++FP ++K N DITSIASNGGRVQCM QVWPP KK+ETLSYLP LS E L+ +P +FE F Sbjct: 1 MASSVLSSAAVAT--RSNVAQANMVAPFTGLKSAASFPVSRKQNLDITSIASNGGRVQCM----------------------------------------QVWPPINKKKYETLSYLPDLSQEQLLSEVEY-LLKNGWVPCLEFETEHGF 107
BLAST of EY665438 vs. ExPASy Swiss-Prot
Match: RBS8_NICPL (Ribulose bisphosphate carboxylase small chain 8B, chloroplastic OS=Nicotiana plumbaginifolia GN=RBCS-8B PE=3 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 1.010e-20 Identity = 65/150 (43.33%), Postives = 81/150 (54.00%), Query Frame = 3 Query: 30 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFACLN*RXXXXXXXXXXXXXXXXACMLQVWPPTGLKKFETLSYLPPLSDESFAQGKSITLIPPAGIPGWKFEVGGAF 479 MASS++SSA VAT R+++AQA+MVAPFTGLKS+++FP ++K N DITSIASNGGRVQCM QVWPP KK+ETLSYLP LS E + L+ +P +FE F Sbjct: 1 MASSVLSSAAVAT--RSNVAQANMVAPFTGLKSAASFPVSRKQNLDITSIASNGGRVQCM----------------------------------------QVWPPINKKKYETLSYLPDLSQEQLL-SEIEYLLKSGWVPCLEFETERGF 107 The following BLAST results are available for this feature:
BLAST of EY665438 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 74
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Sequences
The
following sequences are available for this feature:
EST sequence >EY665438 ID=EY665438; Name=EY665438; organism=Citrus sinensis; type=EST; length=885bpback to top |