EY665438

Overview
NameEY665438
Unique NameEY665438
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length885
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY665438_ssr479 microsatellite EY665438_ssr479:479..494. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY665438 vs. ExPASy Swiss-Prot
Match: RBS3A_SOLLC (Ribulose bisphosphate carboxylase small chain 3A/3C, chloroplastic OS=Solanum lycopersicum GN=RBCS-3A/3C PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.010e-20
Identity = 66/150 (44.00%), Postives = 80/150 (53.33%), Query Frame = 3
Query:   30 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFACLN*RXXXXXXXXXXXXXXXXACMLQVWPPTGLKKFETLSYLPPLSDESFAQGKSITLIPPAGIPGWKFEVGGAF 479
            MASS++SSA VAT  R + AQASMVAPFTGLKS+++FP ++K N DITSIASNGGRV CM                                        QVWPP  +KK+ETLSYLP LSDE     +   L+    +P  +FE    F
Sbjct:    1 MASSVMSSAAVAT--RGNGAQASMVAPFTGLKSTASFPVSRKQNLDITSIASNGGRVSCM----------------------------------------QVWPPINMKKYETLSYLPDLSDEQLL-SEIEYLLKNGWVPCLEFETEHGF 107          
BLAST of EY665438 vs. ExPASy Swiss-Prot
Match: RBS1_NICSY (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Nicotiana sylvestris GN=RBCS PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.010e-20
Identity = 65/150 (43.33%), Postives = 80/150 (53.33%), Query Frame = 3
Query:   30 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFACLN*RXXXXXXXXXXXXXXXXACMLQVWPPTGLKKFETLSYLPPLSDESFAQGKSITLIPPAGIPGWKFEVGGAF 479
            MASS++SSA VAT  R+++AQA+MVAPFTGLKS+++FP ++K N DITSIASNGGRVQCM                                        QVWPP   KK+ETLSYLP LS E         L+    +P  +FE    F
Sbjct:    1 MASSVLSSAAVAT--RSNVAQANMVAPFTGLKSAASFPVSRKQNLDITSIASNGGRVQCM----------------------------------------QVWPPINKKKYETLSYLPDLSQEQLLSEVEY-LLKNGWVPCLEFETEHGF 107          
BLAST of EY665438 vs. ExPASy Swiss-Prot
Match: RBS5_LEMGI (Ribulose bisphosphate carboxylase small chain SSU5A, chloroplastic OS=Lemna gibba GN=SSU5A PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.722e-20
Identity = 60/127 (47.24%), Postives = 70/127 (55.12%), Query Frame = 3
Query:   30 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFACLN*RXXXXXXXXXXXXXXXXACMLQVWPPTGLKKFETLSYLPPLSDESFAQ 410
            MASSM++S   A   RA  AQ+SMVAPF GL+SS AFPAT+K NND++++ SNGGRV CM                                        QVWPP GLKKFETLSYLPPLS E  A+
Sbjct:    1 MASSMMAST--AAVARAGPAQSSMVAPFNGLRSSVAFPATRKANNDLSTLPSNGGRVSCM----------------------------------------QVWPPEGLKKFETLSYLPPLSVEDLAK 85          
BLAST of EY665438 vs. ExPASy Swiss-Prot
Match: RBS2_SPIOL (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Spinacia oleracea GN=RBCS2 PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.722e-20
Identity = 66/150 (44.00%), Postives = 81/150 (54.00%), Query Frame = 3
Query:   30 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFACLN*RXXXXXXXXXXXXXXXXACMLQVWPPTGLKKFETLSYLPPLSDESFAQGKSITLIPPAGIPGWKFEVGGAF 479
            MASS++SSA VAT +R   AQASMVAPFTGLKS+  FPATKK N+DITS+ASNGGRVQCMK                                        VWP   +K++ETLSYLPPL+ +  A+     L+    +P  +FE    F
Sbjct:    1 MASSVLSSAAVATVSRTP-AQASMVAPFTGLKSTVGFPATKK-NDDITSLASNGGRVQCMK----------------------------------------VWPTQNMKRYETLSYLPPLTTDQLARQVDY-LLNNKWVPCLEFETDHGF 107          
BLAST of EY665438 vs. ExPASy Swiss-Prot
Match: RBS_GLYTO (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Glycine tomentella GN=RBCS PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.249e-20
Identity = 69/150 (46.00%), Postives = 75/150 (50.00%), Query Frame = 3
Query:   30 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFACLN*RXXXXXXXXXXXXXXXXACMLQVWPPTGLKKFETLSYLPPLSDESFAQGKSITLIPPAGIPGWKFEVGGAF 479
            MASSMISS  V T NRA    A  VAPFTGLKS + FP T+KTNNDI SIASNGGRVQCM                                        QVWP TG KKFETLSYLP L D   A+     L+    IP  +FE+   F
Sbjct:    1 MASSMISSPAVTTVNRAG---AGTVAPFTGLKSMAGFP-TRKTNNDIASIASNGGRVQCM----------------------------------------QVWPTTGKKKFETLSYLPDLDDAQLAKEVEY-LLRKGWIPCLEFELEHGF 105          
BLAST of EY665438 vs. ExPASy Swiss-Prot
Match: RBS_GLYTA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Glycine tabacina GN=RBCS PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.249e-20
Identity = 69/150 (46.00%), Postives = 75/150 (50.00%), Query Frame = 3
Query:   30 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFACLN*RXXXXXXXXXXXXXXXXACMLQVWPPTGLKKFETLSYLPPLSDESFAQGKSITLIPPAGIPGWKFEVGGAF 479
            MASSMISS  V T NRA    A  VAPFTGLKS + FP T+KTNNDI SIASNGGRVQCM                                        QVWP TG KKFETLSYLP L D   A+     L+    IP  +FE+   F
Sbjct:    1 MASSMISSPAVTTVNRAG---AGTVAPFTGLKSMAGFP-TRKTNNDIASIASNGGRVQCM----------------------------------------QVWPTTGKKKFETLSYLPDLDDAQLAKEVEY-LLRKGWIPCLEFELEHGF 105          
BLAST of EY665438 vs. ExPASy Swiss-Prot
Match: RBS2_AMAHP (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Amaranthus hypochondriacus GN=RBCS2 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 8.548e-20
Identity = 62/124 (50.00%), Postives = 70/124 (56.45%), Query Frame = 3
Query:   30 MASSMISSATVATANRASL--AQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFACLN*RXXXXXXXXXXXXXXXXACMLQVWPPTGLKKFETLSYLPPLSD 395
            MASSM+S+A  A A  A+   AQA+MVAPF GLKS ++FP T+K +NDITSIASNGGRVQCM                                        QVWPP G KKFETLSYLPPLSD
Sbjct:    1 MASSMMSNAATAVAVAATSGGAQANMVAPFNGLKSIASFPVTRK-SNDITSIASNGGRVQCM----------------------------------------QVWPPVGKKKFETLSYLPPLSD 83          
BLAST of EY665438 vs. ExPASy Swiss-Prot
Match: RBS6_LEMGI (Ribulose bisphosphate carboxylase small chain SSU5B, chloroplastic OS=Lemna gibba GN=SSU5B PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.458e-19
Identity = 58/127 (45.67%), Postives = 68/127 (53.54%), Query Frame = 3
Query:   30 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFACLN*RXXXXXXXXXXXXXXXXACMLQVWPPTGLKKFETLSYLPPLSDESFAQ 410
            MASSM++S   A   R   AQ +MVAPF GL+SS AFPAT+K NND++++ SNGGRV CM                                        QVWPP GLKKFETLSYLPPLS E  A+
Sbjct:    1 MASSMMAST--AAVARVGPAQTNMVAPFNGLRSSVAFPATRKANNDLSTLPSNGGRVSCM----------------------------------------QVWPPEGLKKFETLSYLPPLSVEDLAK 85          
BLAST of EY665438 vs. ExPASy Swiss-Prot
Match: RBS3_AMAHP (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Amaranthus hypochondriacus GN=RBCS3 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.458e-19
Identity = 61/122 (50.00%), Postives = 69/122 (56.56%), Query Frame = 3
Query:   30 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFACLN*RXXXXXXXXXXXXXXXXACMLQVWPPTGLKKFETLSYLPPLSD 395
            MASS++S+A  A    AS AQA+MVAPF GLKS ++FP T+K +NDITSIASNGGRVQCM                                        QVWPP G KKFETLSYLPPLSD
Sbjct:    1 MASSLMSNAITAVVG-ASGAQANMVAPFNGLKSIASFPVTRK-SNDITSIASNGGRVQCM----------------------------------------QVWPPVGKKKFETLSYLPPLSD 80          
BLAST of EY665438 vs. ExPASy Swiss-Prot
Match: RBS1_SOLTU (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Solanum tuberosum GN=RBCS-1 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.458e-19
Identity = 64/151 (42.38%), Postives = 80/151 (52.98%), Query Frame = 3
Query:   30 MASSMISSATVATANRASLAQA-SMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFACLN*RXXXXXXXXXXXXXXXXACMLQVWPPTGLKKFETLSYLPPLSDESFAQGKSITLIPPAGIPGWKFEVGGAF 479
            MASS+ISSA VAT  R ++ QA SM+APFTGLKS++ FP ++K N DITSIASNGGRV+CM                                        QVWPP  +KK+ETLSYLP L+DE   +     L+    +P  +FE    F
Sbjct:    1 MASSVISSAAVAT--RTNVTQAGSMIAPFTGLKSAATFPVSRKQNLDITSIASNGGRVRCM----------------------------------------QVWPPINMKKYETLSYLPDLTDEQLLKEVEY-LLKNGWVPCLEFETEHGF 108          
The following BLAST results are available for this feature:
BLAST of EY665438 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
RBS3A_SOLLC1.010e-2044.00Ribulose bisphosphate carboxylase small chain 3A/3... [more]
RBS1_NICSY1.010e-2043.33Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS5_LEMGI1.722e-2047.24Ribulose bisphosphate carboxylase small chain SSU5... [more]
RBS2_SPIOL1.722e-2044.00Ribulose bisphosphate carboxylase small chain 2, c... [more]
RBS_GLYTO2.249e-2046.00Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_GLYTA2.249e-2046.00Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS2_AMAHP8.548e-2050.00Ribulose bisphosphate carboxylase small chain 2, c... [more]
RBS6_LEMGI1.458e-1945.67Ribulose bisphosphate carboxylase small chain SSU5... [more]
RBS3_AMAHP1.458e-1950.00Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS1_SOLTU1.458e-1942.38Ribulose bisphosphate carboxylase small chain 1, c... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-102-002-A09-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665438 ID=EY665438; Name=EY665438; organism=Citrus sinensis; type=EST; length=885bp
TGCAAAGCTAGAAGAACGAGCAAGTACCAATGGCTTCCTCAATGATCTCA
TCGGCCACCGTTGCCACCGCGAACCGCGCCAGCCTTGCTCAGGCCAGCAT
GGTCGCCCCCTTCACCGGCCTCAAGTCTTCTTCTGCTTTCCCAGCAACCA
AGAAGACCAACAATGACATTACTTCCATTGCAAGCAACGGCGGAAGAGTC
CAATGCATGAAGGTCATCATCATAATCATACAAGAATTCATTTCTTCTTT
TGCTTGTTTAAATTGACGGCTTTCTTCTTTTAGCTCTCAATTATGTTTTT
AATTAATTTTCTTGTGAGCTTGTATGTTACAGGTGTGGCCACCAACTGGC
TTGAAGAAGTTCGAGACTCTCTCATACCTCCCGCCACTGTCCGATGAAAG
CTTTGCTCAAGGGAAATCAATTACCTTAATCCCTCCGGCTGGGATCCCTG
GTTGGAAATTCGAAGTTGGAGGGGCTTTTCTCTCTCTCTCTCTCTGGCTT
CTCTTAATAAATACTATTTATTTTGGAGGAAACCTAATCTTTGTGCTTTA
AGAAAAAAAATTACAACTTGTCCTGAATTCTATTGGGCACAAAAAAATCC
ATTTCAAAATCCAAAAACCTGGATTAAAACAATTGGTTTAATTTAAATAC
TAAAGCCTTTTGGGGTAAAAAACGGGAATTTTTACCAGGCAAAAGGGGGG
GGGGAATTTTTGTGTTTTTTTCTTTTTTTTTTTTTTTTTTTCTTTTGGGG
GGCGGGGGAACTGGCAAAAAGAAGGGGGGGGGAACCGGGGAACCCCCCCC
AATTTCCCCCCAGAATATTTTCACACAGGGGACCCTCTCGTGGTAAAATG
GGAAAAACACTCCCCCTCTTCGGGGGGGGGCCAAC
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