EY665438

Overview
NameEY665438
Unique NameEY665438
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length885
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY665438_ssr479 microsatellite EY665438_ssr479:479..494. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY665438 vs. ExPASy Swiss-Prot
Match: RBS_TRIRP (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Trifolium repens GN=RBCS PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.904e-19
Identity = 63/147 (42.86%), Postives = 75/147 (51.02%), Query Frame = 3
Query:   39 SMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFACLN*RXXXXXXXXXXXXXXXXACMLQVWPPTGLKKFETLSYLPPLSDESFAQGKSITLIPPAGIPGWKFEVGGAF 479
            ++ISSA V T NRA + QA++  PFTGLKSS+ FP TKK NNDITSI SNG RV CM                                        QVWPP G KKFETLSYLPPL+DE   +     L+    +P  +FE+   F
Sbjct:    2 ALISSAAVTTINRAPV-QANLATPFTGLKSSAGFPVTKK-NNDITSITSNGSRVNCM----------------------------------------QVWPPVGKKKFETLSYLPPLTDEQLLKEVEY-LLRKGWVPCVEFELEKGF 105          
BLAST of EY665438 vs. ExPASy Swiss-Prot
Match: RBS_HELAN (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Helianthus annuus GN=RBCS PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 4.242e-19
Identity = 59/143 (41.26%), Postives = 77/143 (53.85%), Query Frame = 3
Query:   51 SATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFACLN*RXXXXXXXXXXXXXXXXACMLQVWPPTGLKKFETLSYLPPLSDESFAQGKSITLIPPAGIPGWKFEVGGAF 479
            S++VAT +R + AQA+MVAPFTGLKS++AFP TKK  ND +++ SNGGRVQCMK                                        VWPP GLKK+ETLSYLPPL++   A+     L+    +P  +FE+   F
Sbjct:    5 SSSVATVSRTAPAQANMVAPFTGLKSNAAFPTTKKA-NDFSTLPSNGGRVQCMK----------------------------------------VWPPLGLKKYETLSYLPPLTETQLAKEVDY-LLRKKWVPCLEFELEHGF 105          
BLAST of EY665438 vs. ExPASy Swiss-Prot
Match: RBS_MUSAC (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Musa acuminata GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 7.236e-19
Identity = 57/127 (44.88%), Postives = 70/127 (55.12%), Query Frame = 3
Query:   30 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFACLN*RXXXXXXXXXXXXXXXXACMLQVWPPTGLKKFETLSYLPPLSDESFAQ 410
            ++S M+SSA  AT  RAS AQ+SMVAPFTGLKS+SAFP T+K N D++ + SNGGRVQCMK                                        VWP  G+KKFETLSYLP + DE+  +
Sbjct:    2 VSSMMVSSA--ATFTRASPAQSSMVAPFTGLKSASAFPVTRKPNADLSHLPSNGGRVQCMK----------------------------------------VWPIEGVKKFETLSYLPTMKDEALVK 86          
BLAST of EY665438 vs. ExPASy Swiss-Prot
Match: RBS_CAPAN (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Capsicum annuum GN=RBCS PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.234e-18
Identity = 62/150 (41.33%), Postives = 79/150 (52.67%), Query Frame = 3
Query:   30 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFACLN*RXXXXXXXXXXXXXXXXACMLQVWPPTGLKKFETLSYLPPLSDESFAQGKSITLIPPAGIPGWKFEVGGAF 479
            MASS++S+ATVAT   A+ AQASM+A F GLKS+++FP T+K + DITSIASNGGRV+CM                                         VWPP   KK+ETLSYLP LSDE   + +   L+    +P  +FE    F
Sbjct:    1 MASSVMSTATVATG--ANAAQASMIASFNGLKSAASFPVTRKQDLDITSIASNGGRVECM----------------------------------------LVWPPINKKKYETLSYLPDLSDEQLLK-EIEYLLQKGWVPCLEFETEHGF 107          
BLAST of EY665438 vs. ExPASy Swiss-Prot
Match: RBS4_FLAPR (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Flaveria pringlei GN=RBCS4 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.234e-18
Identity = 60/143 (41.96%), Postives = 77/143 (53.85%), Query Frame = 3
Query:   51 SATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFACLN*RXXXXXXXXXXXXXXXXACMLQVWPPTGLKKFETLSYLPPLSDESFAQGKSITLIPPAGIPGWKFEVGGAF 479
            S+TVAT +RA+ AQA+MVAPFTGLKS++AFPATKK  ND +++ SNGGRVQCMK                                        VWPP G KK+ETLSYLP L++   A+     L+    +P  +FE+   F
Sbjct:    5 SSTVATVSRAAPAQANMVAPFTGLKSNAAFPATKKA-NDFSTLPSNGGRVQCMK----------------------------------------VWPPLGKKKYETLSYLPNLTEAQLAKEVDY-LLRNKWVPCLEFELEHGF 105          
BLAST of EY665438 vs. ExPASy Swiss-Prot
Match: RBS3_FRIAG (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Fritillaria agrestis GN=RBCS3 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.612e-18
Identity = 63/148 (42.57%), Postives = 77/148 (52.03%), Query Frame = 3
Query:   30 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFACLN*RXXXXXXXXXXXXXXXXACMLQVWPPTGLKKFETLSYLPPLSDESFAQGKSITLIPPAGIPGWKFEVGG 473
            MASS    ++VATA RA+ AQASMVAPF GLKS+SAFP T+K    ++++ SNGGRVQCMK                                        VWP  GLKKFETLSYLP LS ES  + +   LI    +P  +F + G
Sbjct:    1 MASSATMLSSVATAARAAPAQASMVAPFVGLKSASAFPVTQKPATGLSTLPSNGGRVQCMK----------------------------------------VWPIVGLKKFETLSYLPTLSVESLLK-QIEYLIRNGWVPCLEFSLEG 107          
BLAST of EY665438 vs. ExPASy Swiss-Prot
Match: RBS2_NICSY (Ribulose bisphosphate carboxylase small chain S41, chloroplastic OS=Nicotiana sylvestris PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.612e-18
Identity = 61/146 (41.78%), Postives = 74/146 (50.68%), Query Frame = 3
Query:   42 MISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFACLN*RXXXXXXXXXXXXXXXXACMLQVWPPTGLKKFETLSYLPPLSDESFAQGKSITLIPPAGIPGWKFEVGGAF 479
            M S+A VAT   A  AQASM+APFTGLKS+++FP ++K N DITSIASNGGRVQCM                                        QVWPP   KK+ETLSYLP LS+E   +     L+    +P  +FE    F
Sbjct:    6 MSSAAAVATGTNA--AQASMIAPFTGLKSATSFPVSRKQNLDITSIASNGGRVQCM----------------------------------------QVWPPINKKKYETLSYLPDLSEEQLLREVEY-LLKNGWVPCLEFETEHGF 108          
BLAST of EY665438 vs. ExPASy Swiss-Prot
Match: RBS2_LEMGI (Ribulose bisphosphate carboxylase small chain SSU26, chloroplastic OS=Lemna gibba GN=SSU26 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.612e-18
Identity = 56/127 (44.09%), Postives = 69/127 (54.33%), Query Frame = 3
Query:   30 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFACLN*RXXXXXXXXXXXXXXXXACMLQVWPPTGLKKFETLSYLPPLSDESFAQ 410
            MASSM++S   A   RA  AQ++MVAPF GL+SS AFPAT+K N +++++ SNGG+V CM                                        QVWPP GLKKFETLSYLPPLS E  A+
Sbjct:    1 MASSMMAST--AAVARAGPAQSNMVAPFNGLRSSVAFPATRKANKNLSTLPSNGGKVSCM----------------------------------------QVWPPEGLKKFETLSYLPPLSVEDLAK 85          
BLAST of EY665438 vs. ExPASy Swiss-Prot
Match: RBS5_FRIAG (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Fritillaria agrestis GN=RBCS5 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.750e-18
Identity = 63/148 (42.57%), Postives = 77/148 (52.03%), Query Frame = 3
Query:   30 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFACLN*RXXXXXXXXXXXXXXXXACMLQVWPPTGLKKFETLSYLPPLSDESFAQGKSITLIPPAGIPGWKFEVGG 473
            MASS    ++VATA  A+ AQASMVAPF GLKS+SAFP T+KT   ++++ SNGGRVQCMK                                        VWP  GLKKFETLSYLP LS ES  + +   LI    +P  +F + G
Sbjct:    1 MASSATMLSSVATAACAAPAQASMVAPFVGLKSASAFPVTQKTATGLSTLPSNGGRVQCMK----------------------------------------VWPIVGLKKFETLSYLPTLSVESLLK-QIEYLIRNGWVPCLEFSLEG 107          
BLAST of EY665438 vs. ExPASy Swiss-Prot
Match: RBS3_PEA (Ribulose bisphosphate carboxylase small chain 3A, chloroplastic OS=Pisum sativum GN=RBCS-3A PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.750e-18
Identity = 60/148 (40.54%), Postives = 74/148 (50.00%), Query Frame = 3
Query:   36 SSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFACLN*RXXXXXXXXXXXXXXXXACMLQVWPPTGLKKFETLSYLPPLSDESFAQGKSITLIPPAGIPGWKFEVGGAF 479
            +SMISS+ V T +RAS  Q++ VAPF GLKS + FP  KK N DITSI SNGGRV+CM                                        QVWPP G KKFETLSYLPPL+ +   +     L+    +P  +FE+   F
Sbjct:    2 ASMISSSAVTTVSRASTVQSAAVAPFGGLKSMTGFP-VKKVNTDITSITSNGGRVKCM----------------------------------------QVWPPIGKKKFETLSYLPPLTRDQLLKEVEY-LLRKGWVPCLEFELEKGF 107          
The following BLAST results are available for this feature:
BLAST of EY665438 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
RBS_TRIRP1.904e-1942.86Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_HELAN4.242e-1941.26Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_MUSAC7.236e-1944.88Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_CAPAN1.234e-1841.33Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS4_FLAPR1.234e-1841.96Ribulose bisphosphate carboxylase small chain 4, c... [more]
RBS3_FRIAG1.612e-1842.57Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS2_NICSY1.612e-1841.78Ribulose bisphosphate carboxylase small chain S41,... [more]
RBS2_LEMGI1.612e-1844.09Ribulose bisphosphate carboxylase small chain SSU2... [more]
RBS5_FRIAG2.750e-1842.57Ribulose bisphosphate carboxylase small chain 5, c... [more]
RBS3_PEA2.750e-1840.54Ribulose bisphosphate carboxylase small chain 3A, ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-102-002-A09-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665438 ID=EY665438; Name=EY665438; organism=Citrus sinensis; type=EST; length=885bp
TGCAAAGCTAGAAGAACGAGCAAGTACCAATGGCTTCCTCAATGATCTCA
TCGGCCACCGTTGCCACCGCGAACCGCGCCAGCCTTGCTCAGGCCAGCAT
GGTCGCCCCCTTCACCGGCCTCAAGTCTTCTTCTGCTTTCCCAGCAACCA
AGAAGACCAACAATGACATTACTTCCATTGCAAGCAACGGCGGAAGAGTC
CAATGCATGAAGGTCATCATCATAATCATACAAGAATTCATTTCTTCTTT
TGCTTGTTTAAATTGACGGCTTTCTTCTTTTAGCTCTCAATTATGTTTTT
AATTAATTTTCTTGTGAGCTTGTATGTTACAGGTGTGGCCACCAACTGGC
TTGAAGAAGTTCGAGACTCTCTCATACCTCCCGCCACTGTCCGATGAAAG
CTTTGCTCAAGGGAAATCAATTACCTTAATCCCTCCGGCTGGGATCCCTG
GTTGGAAATTCGAAGTTGGAGGGGCTTTTCTCTCTCTCTCTCTCTGGCTT
CTCTTAATAAATACTATTTATTTTGGAGGAAACCTAATCTTTGTGCTTTA
AGAAAAAAAATTACAACTTGTCCTGAATTCTATTGGGCACAAAAAAATCC
ATTTCAAAATCCAAAAACCTGGATTAAAACAATTGGTTTAATTTAAATAC
TAAAGCCTTTTGGGGTAAAAAACGGGAATTTTTACCAGGCAAAAGGGGGG
GGGGAATTTTTGTGTTTTTTTCTTTTTTTTTTTTTTTTTTTCTTTTGGGG
GGCGGGGGAACTGGCAAAAAGAAGGGGGGGGGAACCGGGGAACCCCCCCC
AATTTCCCCCCAGAATATTTTCACACAGGGGACCCTCTCGTGGTAAAATG
GGAAAAACACTCCCCCTCTTCGGGGGGGGGCCAAC
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