CX043276

Overview
NameCX043276
Unique NameCX043276
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length821
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2462 contig Csv1_Contig2462:113..935. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_PSEAE (Tryptophan synthase beta chain OS=Pseudomonas aeruginosa GN=trpB PE=3 SV=2)

HSP 1 Score: 275.404 bits (703), Expect = 2.666e-73
Identity = 128/226 (56.64%), Postives = 173/226 (76.55%), Query Frame = -1
Query:  135 GCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNY 812
            G  K+A +EA+R+WV N++ ++YL GTV GPHP P MVR+FQ++IGKETR+Q  EK G  PD L+AC+G GSNA+GLFH F++D  V+++GVEAAG G+D+GKHAA+L  G  GV HG  ++LLQD +GQI+  HS+  GL+YPG+GPE ++L DTGR E+ + TD EA++A+   CRLEGI PALE+SHALA + K  P+LP    +VVN SG GDKD+ TV+++
Sbjct:  170 GTLKDAMNEALRDWVTNVDSTFYLIGTVAGPHPYPAMVRDFQAVIGKETREQLAEKEGRLPDSLVACIGGGSNAMGLFHPFLDDAGVQIVGVEAAGHGIDTGKHAASLNGGVPGVLHGNRTFLLQDADGQIIDAHSISAGLDYPGIGPEHAWLHDTGRVEYTSITDDEALEAFHTCCRLEGIIPALESSHALAEVFKRAPSLPKEHIMVVNLSGRGDKDMQTVMHH 395          
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_NITEC (Tryptophan synthase beta chain OS=Nitrosomonas eutropha (strain C91) GN=trpB PE=3 SV=1)

HSP 1 Score: 275.404 bits (703), Expect = 2.666e-73
Identity = 129/220 (58.64%), Postives = 169/220 (76.82%), Query Frame = -1
Query:  144 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTV 803
            K+A +EA+R+WV N+  +YY+ GTV GPHP P+MVR+FQ++IG E R+Q  E++G +PD L+ACVG GSNA+GLF+ +I +E+VR+IGVEAAG G+D+ KHAATL  G  GV HG  +YL+QDE GQI+ THS+  GL+YPGVGPE ++L+D GRAE+   TD EA+ A+  LCR EGI PALE+SHALA+  KL PTL     ++VN SG GDKD+ TV
Sbjct:  172 KDALNEAMRDWVTNVGNTYYIIGTVAGPHPYPMMVRDFQAVIGNEARQQMQEEYGRQPDALIACVGGGSNAIGLFYPYIGEENVRMIGVEAAGKGIDTQKHAATLVTGRPGVLHGNRTYLIQDENGQIIETHSISAGLDYPGVGPEHAWLKDCGRAEYVAITDGEALAAFHALCRFEGIMPALESSHALAYAAKLAPTLRKDQLLLVNLSGRGDKDMATV 391          
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB1_PYRAB (Tryptophan synthase beta chain 1 OS=Pyrococcus abyssi GN=trpB1 PE=3 SV=1)

HSP 1 Score: 274.248 bits (700), Expect = 5.940e-73
Identity = 127/226 (56.19%), Postives = 174/226 (76.99%), Query Frame = -1
Query:  126 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNYRYN 803
            K+A +EA+R+WV   E S+YL G+VVGPHP PI+VR+FQS+IG+E R+Q +E  G  PDV++ACVG GSNA+G+F+ F+ D+ VRLIGVEA G G++SGKH+A+L  GE+GV+HG +SY LQDEEGQI  THS+  GL+YPGVGPE ++L+++GRAE+ T TD+EA++A+  L R EGI PALE++HA+A+  KL   +     ++VN SG GDKD+D V+    N
Sbjct:  162 KDAINEALRDWVATFEYSHYLIGSVVGPHPYPIIVRDFQSVIGREAREQILEAEGDLPDVIVACVGGGSNAMGIFYPFVKDKSVRLIGVEAGGKGIESGKHSASLNAGEIGVFHGMLSYFLQDEEGQIRTTHSIAPGLDYPGVGPEHAYLKESGRAEYVTVTDEEALRAFHELSRTEGIIPALESAHAVAYAIKLAREMSRDDVIIVNLSGRGDKDLDIVLKVSGN 387          
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_ACIF5 (Tryptophan synthase beta chain OS=Acidithiobacillus ferrooxidans (strain ATCC 53993) GN=trpB PE=3 SV=1)

HSP 1 Score: 273.863 bits (699), Expect = 7.758e-73
Identity = 127/220 (57.73%), Postives = 166/220 (75.45%), Query Frame = -1
Query:  144 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTV 803
            K+A +EA+R+WV N+E ++Y+ GTV GPHP P+MVR+F  +IG E R Q +E  G  PD L+ACVG GSNA+GLF+ FI D  VR+IGVEA G GL +G+HAA L  G  GV HG  +YL++DE+GQIL THS+  GL+YPGVGPE ++L+DTGRAE+  ATD+EA+ A+ RLCR EGI PALE++HALA   +L PT+ +   ++VN SG GDKD+ TV
Sbjct:  172 KDALNEALRDWVTNVESTFYVIGTVAGPHPYPVMVRDFHRVIGDEARAQCLELTGRLPDCLIACVGGGSNAIGLFYPFIEDRAVRMIGVEAGGLGLGTGQHAAPLTTGRPGVLHGNRTYLMEDEDGQILPTHSISAGLDYPGVGPEHAYLKDTGRAEYVAATDEEALAAFHRLCRTEGIIPALESAHALAHAFRLAPTMRSDQTIIVNLSGRGDKDIHTV 391          
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_ACIF2 (Tryptophan synthase beta chain OS=Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / NCIB 8455) GN=trpB PE=3 SV=1)

HSP 1 Score: 273.863 bits (699), Expect = 7.758e-73
Identity = 127/220 (57.73%), Postives = 166/220 (75.45%), Query Frame = -1
Query:  144 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTV 803
            K+A +EA+R+WV N+E ++Y+ GTV GPHP P+MVR+F  +IG E R Q +E  G  PD L+ACVG GSNA+GLF+ FI D  VR+IGVEA G GL +G+HAA L  G  GV HG  +YL++DE+GQIL THS+  GL+YPGVGPE ++L+DTGRAE+  ATD+EA+ A+ RLCR EGI PALE++HALA   +L PT+ +   ++VN SG GDKD+ TV
Sbjct:  172 KDALNEALRDWVTNVESTFYVIGTVAGPHPYPVMVRDFHRVIGDEARAQCLELTGRLPDCLIACVGGGSNAIGLFYPFIEDRAVRMIGVEAGGLGLGTGQHAAPLTTGRPGVLHGNRTYLMEDEDGQILPTHSISAGLDYPGVGPEHAYLKDTGRAEYVAATDEEALAAFHRLCRTEGIIPALESAHALAHAFRLAPTMRSDQTIIVNLSGRGDKDIHTV 391          
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_THETN (Tryptophan synthase beta chain OS=Thermoanaerobacter tengcongensis GN=trpB PE=3 SV=1)

HSP 1 Score: 273.478 bits (698), Expect = 1.013e-72
Identity = 129/220 (58.64%), Postives = 172/220 (78.18%), Query Frame = -1
Query:  144 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTV 803
            K+A +EAIR+WV N+E ++Y+ G+VVGPHP P MVR+FQ +IG ET++Q +EK G  PD ++ACVG GSNA+G+F+ FI D+ V+L+GVEAAG G+++GKHA+ +AKG VGV HG M+YLLQDEEG+IL  HS+  GL+YPGVGPE ++L++ GRAE+  ATD+EA+ A+  L R EGI PALE++HALA+  KL   L     +VVN SG GDKDV+TV
Sbjct:  164 KDAVNEAIRDWVTNIETTFYVIGSVVGPHPYPTMVRDFQRVIGDETKEQILEKEGRLPDYVVACVGGGSNAMGIFYPFIEDKGVKLVGVEAAGEGIETGKHASAMAKGSVGVLHGMMTYLLQDEEGKILPVHSISAGLDYPGVGPEHAYLKEIGRAEYVYATDEEALAAFMDLSRTEGIIPALESAHALAYAMKLAKKLDEDKIIVVNLSGRGDKDVNTV 383          
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_CLOK5 (Tryptophan synthase beta chain OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) GN=trpB PE=3 SV=1)

HSP 1 Score: 273.478 bits (698), Expect = 1.013e-72
Identity = 130/220 (59.09%), Postives = 171/220 (77.73%), Query Frame = -1
Query:  144 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTV 803
            K+A +EA+R WV N+E ++Y+ G+VVGPHP P MVR+FQ IIG ET++Q ++K G  P+ ++ACVG GSN++G+F+ F+ D+ V+LIGVEAAG G+D+ KHAA++AKG VGV HG M+YL+QD+EGQIL  +SV  GL+YPGVGPE ++L+DT RAE+   TDQEA+ A+  L R EGI PALE+SHALA+  KL P L     VVVN SG GDKDVDT+
Sbjct:  170 KDAVNEALRKWVENIEDTFYVMGSVVGPHPYPTMVRDFQRIIGDETKEQILKKEGKLPNYIIACVGGGSNSMGIFYPFVEDKSVKLIGVEAAGLGVDTDKHAASMAKGSVGVLHGMMTYLIQDDEGQILPVYSVSAGLDYPGVGPEHAYLKDTKRAEYTYVTDQEALDAFGYLSRCEGIIPALESSHALAYTMKLAPELSKEEIVVVNISGRGDKDVDTI 389          
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_CLOK1 (Tryptophan synthase beta chain OS=Clostridium kluyveri (strain NBRC 12016) GN=trpB PE=3 SV=1)

HSP 1 Score: 273.478 bits (698), Expect = 1.013e-72
Identity = 130/220 (59.09%), Postives = 171/220 (77.73%), Query Frame = -1
Query:  144 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTV 803
            K+A +EA+R WV N+E ++Y+ G+VVGPHP P MVR+FQ IIG ET++Q ++K G  P+ ++ACVG GSN++G+F+ F+ D+ V+LIGVEAAG G+D+ KHAA++AKG VGV HG M+YL+QD+EGQIL  +SV  GL+YPGVGPE ++L+DT RAE+   TDQEA+ A+  L R EGI PALE+SHALA+  KL P L     VVVN SG GDKDVDT+
Sbjct:  170 KDAVNEALRKWVENIEDTFYVMGSVVGPHPYPTMVRDFQRIIGDETKEQILKKEGKLPNYIIACVGGGSNSMGIFYPFVEDKSVKLIGVEAAGLGVDTDKHAASMAKGSVGVLHGMMTYLIQDDEGQILPVYSVSAGLDYPGVGPEHAYLKDTKRAEYTYVTDQEALDAFGYLSRCEGIIPALESSHALAYTMKLAPELSKEEIVVVNISGRGDKDVDTI 389          
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_AZOVD (Tryptophan synthase beta chain OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=trpB PE=3 SV=1)

HSP 1 Score: 273.092 bits (697), Expect = 1.323e-72
Identity = 127/226 (56.19%), Postives = 172/226 (76.11%), Query Frame = -1
Query:  135 GCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNY 812
            G  K+A +EA+R+WV N+E ++YL GTV GPHP P MVR+FQ++IGKETR+Q +EK G  PD L+AC+G GSNA+GLFH F+++  V+++GVEAAG G+++GKHAA+L  G  GV HG  ++LLQD +GQI+  HS+  GL+YPG+GPE ++L D GR E+ + TD EA+QA+   CRLEGI PALE+SHALA + K  P LP    +VVN SG GDKD+ TV+++
Sbjct:  172 GTLKDAMNEALRDWVTNVETTFYLIGTVAGPHPYPAMVRDFQAVIGKETREQLIEKEGRLPDSLVACIGGGSNAMGLFHPFLDEPGVKIVGVEAAGHGIETGKHAASLNGGVPGVLHGNRTFLLQDADGQIIDAHSISAGLDYPGIGPEHAWLHDIGRVEYSSITDHEALQAFHTCCRLEGIIPALESSHALAEVFKRAPRLPKDHLMVVNLSGRGDKDMQTVMHH 397          
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_METPP (Tryptophan synthase beta chain OS=Methylibium petroleiphilum (strain PM1) GN=trpB PE=3 SV=1)

HSP 1 Score: 272.322 bits (695), Expect = 2.257e-72
Identity = 129/222 (58.11%), Postives = 169/222 (76.13%), Query Frame = -1
Query:  138 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVN 803
            K+A +EA+R+WV N+E ++Y+ GTV GP P P MVR+FQS+IG+E  +Q  E  G +PD ++ACVG GSNA+G+F+ +I  E VRLIGVEAAG GLDSGKHAA+L+ G  GV HG  +YLLQD  GQI+ THS+  GL+YPGVGPE ++L+D GRAE+   TD EA+QA+ RLCR EGI PALE+SHA+A+  KL PT+ +   ++VN SG GDKD+ TV +
Sbjct:  172 KDALNEALRDWVTNVENTFYIIGTVAGPAPYPEMVRDFQSVIGEECLRQMPEMAGRQPDAVIACVGGGSNAMGIFYPYIRHEGVRLIGVEAAGHGLDSGKHAASLSAGSPGVLHGNRTYLLQDANGQIIETHSISAGLDYPGVGPEHAYLKDIGRAEYVGITDDEALQAFHRLCRTEGIIPALESSHAVAYAMKLAPTMRSDQSLLVNLSGRGDKDIGTVAD 393          
The following BLAST results are available for this feature:
BLAST of CX043276 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 441
Match NameE-valueIdentityDescription
TRPB_PSEAE2.666e-7356.64Tryptophan synthase beta chain OS=Pseudomonas aeru... [more]
TRPB_NITEC2.666e-7358.64Tryptophan synthase beta chain OS=Nitrosomonas eut... [more]
TRPB1_PYRAB5.940e-7356.19Tryptophan synthase beta chain 1 OS=Pyrococcus aby... [more]
TRPB_ACIF57.758e-7357.73Tryptophan synthase beta chain OS=Acidithiobacillu... [more]
TRPB_ACIF27.758e-7357.73Tryptophan synthase beta chain OS=Acidithiobacillu... [more]
TRPB_THETN1.013e-7258.64Tryptophan synthase beta chain OS=Thermoanaerobact... [more]
TRPB_CLOK51.013e-7259.09Tryptophan synthase beta chain OS=Clostridium kluy... [more]
TRPB_CLOK11.013e-7259.09Tryptophan synthase beta chain OS=Clostridium kluy... [more]
TRPB_AZOVD1.323e-7256.19Tryptophan synthase beta chain OS=Azotobacter vine... [more]
TRPB_METPP2.257e-7258.11Tryptophan synthase beta chain OS=Methylibium petr... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_10A07_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-10A07-B14-1-7.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043276 ID=CX043276; Name=CX043276; organism=Citrus sinensis; type=EST; length=821bp
TTTTTTGAGAAAAATAGGTCTTAAATTAATAGATTTCTCGGGTTGCTGCT
AAATTGACGGGAACCCTTAAATATTGTGGTCACCACTTCTTCGATCCATT
ACAATTTCTACGTCGATAATTATTGATTGTATCTGTAATTGACGACCGTG
TCGACGTCCTTATCCCCACCTCCACTACAGTTGACAACAACTTTTGCACC
ATTAGGTAAAGTAGGGCAAAGTTTCTCTAGAAATGCTAATGCATGAGATG
CCTCAAGGGCCGGAAATATGCCTTCTAATCTGCACAGCCGTTGATATGCT
TGGACAGCTTCTTGGTCAGTCGCAGTGTAGAACTCCGCACGCCCAGTGTC
CCTAAGAAAGCTTATCTCCGGGCCAACTCCTGGATACTCTAGCCCTACAC
CGACAGAATGAGTCCCCAAGATTTGGCCTTCTTCATCTTGCAACAAGTAG
CTCATGGCTCCATGATAAACACCCACTTCCCCTTTAGCCAGAGTTGCAGC
GTGTTTGCCGCTGTCCAAGCCAAATCCAGCAGCCTCCACTCCAATCAATC
TCACATCTTCATCATTTATGAATTCATGAAACAAACCCAACGCATTTGAT
CCACTGCCCACACAAGCCAGCAATACATCAGGCTTGCCTCCCCATTTTTC
CATTGCTTGTTTTCTCGTTTCTTTGCCTATGATTGATTGAAATTCTCGTA
CCATTATTGGACACGGGTGAGGCCCCACCACCGTACCCGTTAAATAATAG
CTTTTTTCTAAGTTCCCCACCCAATTTCTGATAGCTTCTGAGCTTGCTTC
TTTGAAACATCCATCCACTGC
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