CX043276
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_PSEAE (Tryptophan synthase beta chain OS=Pseudomonas aeruginosa GN=trpB PE=3 SV=2) HSP 1 Score: 275.404 bits (703), Expect = 2.666e-73 Identity = 128/226 (56.64%), Postives = 173/226 (76.55%), Query Frame = -1 Query: 135 GCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNY 812 G K+A +EA+R+WV N++ ++YL GTV GPHP P MVR+FQ++IGKETR+Q EK G PD L+AC+G GSNA+GLFH F++D V+++GVEAAG G+D+GKHAA+L G GV HG ++LLQD +GQI+ HS+ GL+YPG+GPE ++L DTGR E+ + TD EA++A+ CRLEGI PALE+SHALA + K P+LP +VVN SG GDKD+ TV+++ Sbjct: 170 GTLKDAMNEALRDWVTNVDSTFYLIGTVAGPHPYPAMVRDFQAVIGKETREQLAEKEGRLPDSLVACIGGGSNAMGLFHPFLDDAGVQIVGVEAAGHGIDTGKHAASLNGGVPGVLHGNRTFLLQDADGQIIDAHSISAGLDYPGIGPEHAWLHDTGRVEYTSITDDEALEAFHTCCRLEGIIPALESSHALAEVFKRAPSLPKEHIMVVNLSGRGDKDMQTVMHH 395
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_NITEC (Tryptophan synthase beta chain OS=Nitrosomonas eutropha (strain C91) GN=trpB PE=3 SV=1) HSP 1 Score: 275.404 bits (703), Expect = 2.666e-73 Identity = 129/220 (58.64%), Postives = 169/220 (76.82%), Query Frame = -1 Query: 144 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTV 803 K+A +EA+R+WV N+ +YY+ GTV GPHP P+MVR+FQ++IG E R+Q E++G +PD L+ACVG GSNA+GLF+ +I +E+VR+IGVEAAG G+D+ KHAATL G GV HG +YL+QDE GQI+ THS+ GL+YPGVGPE ++L+D GRAE+ TD EA+ A+ LCR EGI PALE+SHALA+ KL PTL ++VN SG GDKD+ TV Sbjct: 172 KDALNEAMRDWVTNVGNTYYIIGTVAGPHPYPMMVRDFQAVIGNEARQQMQEEYGRQPDALIACVGGGSNAIGLFYPYIGEENVRMIGVEAAGKGIDTQKHAATLVTGRPGVLHGNRTYLIQDENGQIIETHSISAGLDYPGVGPEHAWLKDCGRAEYVAITDGEALAAFHALCRFEGIMPALESSHALAYAAKLAPTLRKDQLLLVNLSGRGDKDMATV 391
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB1_PYRAB (Tryptophan synthase beta chain 1 OS=Pyrococcus abyssi GN=trpB1 PE=3 SV=1) HSP 1 Score: 274.248 bits (700), Expect = 5.940e-73 Identity = 127/226 (56.19%), Postives = 174/226 (76.99%), Query Frame = -1 Query: 126 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNYRYN 803 K+A +EA+R+WV E S+YL G+VVGPHP PI+VR+FQS+IG+E R+Q +E G PDV++ACVG GSNA+G+F+ F+ D+ VRLIGVEA G G++SGKH+A+L GE+GV+HG +SY LQDEEGQI THS+ GL+YPGVGPE ++L+++GRAE+ T TD+EA++A+ L R EGI PALE++HA+A+ KL + ++VN SG GDKD+D V+ N Sbjct: 162 KDAINEALRDWVATFEYSHYLIGSVVGPHPYPIIVRDFQSVIGREAREQILEAEGDLPDVIVACVGGGSNAMGIFYPFVKDKSVRLIGVEAGGKGIESGKHSASLNAGEIGVFHGMLSYFLQDEEGQIRTTHSIAPGLDYPGVGPEHAYLKESGRAEYVTVTDEEALRAFHELSRTEGIIPALESAHAVAYAIKLAREMSRDDVIIVNLSGRGDKDLDIVLKVSGN 387
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_ACIF5 (Tryptophan synthase beta chain OS=Acidithiobacillus ferrooxidans (strain ATCC 53993) GN=trpB PE=3 SV=1) HSP 1 Score: 273.863 bits (699), Expect = 7.758e-73 Identity = 127/220 (57.73%), Postives = 166/220 (75.45%), Query Frame = -1 Query: 144 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTV 803 K+A +EA+R+WV N+E ++Y+ GTV GPHP P+MVR+F +IG E R Q +E G PD L+ACVG GSNA+GLF+ FI D VR+IGVEA G GL +G+HAA L G GV HG +YL++DE+GQIL THS+ GL+YPGVGPE ++L+DTGRAE+ ATD+EA+ A+ RLCR EGI PALE++HALA +L PT+ + ++VN SG GDKD+ TV Sbjct: 172 KDALNEALRDWVTNVESTFYVIGTVAGPHPYPVMVRDFHRVIGDEARAQCLELTGRLPDCLIACVGGGSNAIGLFYPFIEDRAVRMIGVEAGGLGLGTGQHAAPLTTGRPGVLHGNRTYLMEDEDGQILPTHSISAGLDYPGVGPEHAYLKDTGRAEYVAATDEEALAAFHRLCRTEGIIPALESAHALAHAFRLAPTMRSDQTIIVNLSGRGDKDIHTV 391
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_ACIF2 (Tryptophan synthase beta chain OS=Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / NCIB 8455) GN=trpB PE=3 SV=1) HSP 1 Score: 273.863 bits (699), Expect = 7.758e-73 Identity = 127/220 (57.73%), Postives = 166/220 (75.45%), Query Frame = -1 Query: 144 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTV 803 K+A +EA+R+WV N+E ++Y+ GTV GPHP P+MVR+F +IG E R Q +E G PD L+ACVG GSNA+GLF+ FI D VR+IGVEA G GL +G+HAA L G GV HG +YL++DE+GQIL THS+ GL+YPGVGPE ++L+DTGRAE+ ATD+EA+ A+ RLCR EGI PALE++HALA +L PT+ + ++VN SG GDKD+ TV Sbjct: 172 KDALNEALRDWVTNVESTFYVIGTVAGPHPYPVMVRDFHRVIGDEARAQCLELTGRLPDCLIACVGGGSNAIGLFYPFIEDRAVRMIGVEAGGLGLGTGQHAAPLTTGRPGVLHGNRTYLMEDEDGQILPTHSISAGLDYPGVGPEHAYLKDTGRAEYVAATDEEALAAFHRLCRTEGIIPALESAHALAHAFRLAPTMRSDQTIIVNLSGRGDKDIHTV 391
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_THETN (Tryptophan synthase beta chain OS=Thermoanaerobacter tengcongensis GN=trpB PE=3 SV=1) HSP 1 Score: 273.478 bits (698), Expect = 1.013e-72 Identity = 129/220 (58.64%), Postives = 172/220 (78.18%), Query Frame = -1 Query: 144 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTV 803 K+A +EAIR+WV N+E ++Y+ G+VVGPHP P MVR+FQ +IG ET++Q +EK G PD ++ACVG GSNA+G+F+ FI D+ V+L+GVEAAG G+++GKHA+ +AKG VGV HG M+YLLQDEEG+IL HS+ GL+YPGVGPE ++L++ GRAE+ ATD+EA+ A+ L R EGI PALE++HALA+ KL L +VVN SG GDKDV+TV Sbjct: 164 KDAVNEAIRDWVTNIETTFYVIGSVVGPHPYPTMVRDFQRVIGDETKEQILEKEGRLPDYVVACVGGGSNAMGIFYPFIEDKGVKLVGVEAAGEGIETGKHASAMAKGSVGVLHGMMTYLLQDEEGKILPVHSISAGLDYPGVGPEHAYLKEIGRAEYVYATDEEALAAFMDLSRTEGIIPALESAHALAYAMKLAKKLDEDKIIVVNLSGRGDKDVNTV 383
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_CLOK5 (Tryptophan synthase beta chain OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) GN=trpB PE=3 SV=1) HSP 1 Score: 273.478 bits (698), Expect = 1.013e-72 Identity = 130/220 (59.09%), Postives = 171/220 (77.73%), Query Frame = -1 Query: 144 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTV 803 K+A +EA+R WV N+E ++Y+ G+VVGPHP P MVR+FQ IIG ET++Q ++K G P+ ++ACVG GSN++G+F+ F+ D+ V+LIGVEAAG G+D+ KHAA++AKG VGV HG M+YL+QD+EGQIL +SV GL+YPGVGPE ++L+DT RAE+ TDQEA+ A+ L R EGI PALE+SHALA+ KL P L VVVN SG GDKDVDT+ Sbjct: 170 KDAVNEALRKWVENIEDTFYVMGSVVGPHPYPTMVRDFQRIIGDETKEQILKKEGKLPNYIIACVGGGSNSMGIFYPFVEDKSVKLIGVEAAGLGVDTDKHAASMAKGSVGVLHGMMTYLIQDDEGQILPVYSVSAGLDYPGVGPEHAYLKDTKRAEYTYVTDQEALDAFGYLSRCEGIIPALESSHALAYTMKLAPELSKEEIVVVNISGRGDKDVDTI 389
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_CLOK1 (Tryptophan synthase beta chain OS=Clostridium kluyveri (strain NBRC 12016) GN=trpB PE=3 SV=1) HSP 1 Score: 273.478 bits (698), Expect = 1.013e-72 Identity = 130/220 (59.09%), Postives = 171/220 (77.73%), Query Frame = -1 Query: 144 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTV 803 K+A +EA+R WV N+E ++Y+ G+VVGPHP P MVR+FQ IIG ET++Q ++K G P+ ++ACVG GSN++G+F+ F+ D+ V+LIGVEAAG G+D+ KHAA++AKG VGV HG M+YL+QD+EGQIL +SV GL+YPGVGPE ++L+DT RAE+ TDQEA+ A+ L R EGI PALE+SHALA+ KL P L VVVN SG GDKDVDT+ Sbjct: 170 KDAVNEALRKWVENIEDTFYVMGSVVGPHPYPTMVRDFQRIIGDETKEQILKKEGKLPNYIIACVGGGSNSMGIFYPFVEDKSVKLIGVEAAGLGVDTDKHAASMAKGSVGVLHGMMTYLIQDDEGQILPVYSVSAGLDYPGVGPEHAYLKDTKRAEYTYVTDQEALDAFGYLSRCEGIIPALESSHALAYTMKLAPELSKEEIVVVNISGRGDKDVDTI 389
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_AZOVD (Tryptophan synthase beta chain OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=trpB PE=3 SV=1) HSP 1 Score: 273.092 bits (697), Expect = 1.323e-72 Identity = 127/226 (56.19%), Postives = 172/226 (76.11%), Query Frame = -1 Query: 135 GCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNY 812 G K+A +EA+R+WV N+E ++YL GTV GPHP P MVR+FQ++IGKETR+Q +EK G PD L+AC+G GSNA+GLFH F+++ V+++GVEAAG G+++GKHAA+L G GV HG ++LLQD +GQI+ HS+ GL+YPG+GPE ++L D GR E+ + TD EA+QA+ CRLEGI PALE+SHALA + K P LP +VVN SG GDKD+ TV+++ Sbjct: 172 GTLKDAMNEALRDWVTNVETTFYLIGTVAGPHPYPAMVRDFQAVIGKETREQLIEKEGRLPDSLVACIGGGSNAMGLFHPFLDEPGVKIVGVEAAGHGIETGKHAASLNGGVPGVLHGNRTFLLQDADGQIIDAHSISAGLDYPGIGPEHAWLHDIGRVEYSSITDHEALQAFHTCCRLEGIIPALESSHALAEVFKRAPRLPKDHLMVVNLSGRGDKDMQTVMHH 397
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_METPP (Tryptophan synthase beta chain OS=Methylibium petroleiphilum (strain PM1) GN=trpB PE=3 SV=1) HSP 1 Score: 272.322 bits (695), Expect = 2.257e-72 Identity = 129/222 (58.11%), Postives = 169/222 (76.13%), Query Frame = -1 Query: 138 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVN 803 K+A +EA+R+WV N+E ++Y+ GTV GP P P MVR+FQS+IG+E +Q E G +PD ++ACVG GSNA+G+F+ +I E VRLIGVEAAG GLDSGKHAA+L+ G GV HG +YLLQD GQI+ THS+ GL+YPGVGPE ++L+D GRAE+ TD EA+QA+ RLCR EGI PALE+SHA+A+ KL PT+ + ++VN SG GDKD+ TV + Sbjct: 172 KDALNEALRDWVTNVENTFYIIGTVAGPAPYPEMVRDFQSVIGEECLRQMPEMAGRQPDAVIACVGGGSNAMGIFYPYIRHEGVRLIGVEAAGHGLDSGKHAASLSAGSPGVLHGNRTYLLQDANGQIIETHSISAGLDYPGVGPEHAYLKDIGRAEYVGITDDEALQAFHRLCRTEGIIPALESSHAVAYAMKLAPTMRSDQSLLVNLSGRGDKDIGTVAD 393 The following BLAST results are available for this feature:
BLAST of CX043276 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 441
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Sequences
The
following sequences are available for this feature:
EST sequence >CX043276 ID=CX043276; Name=CX043276; organism=Citrus sinensis; type=EST; length=821bpback to top |