CX043276

Overview
NameCX043276
Unique NameCX043276
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length821
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2462 contig Csv1_Contig2462:113..935. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_DECAR (Tryptophan synthase beta chain OS=Dechloromonas aromatica (strain RCB) GN=trpB PE=3 SV=1)

HSP 1 Score: 266.159 bits (679), Expect = 1.618e-70
Identity = 126/220 (57.27%), Postives = 167/220 (75.91%), Query Frame = -1
Query:  144 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTV 803
            K+A +EA+R+WV N+  ++Y+ GTV GPHP P++VR+FQ IIG+E   Q  E  G +PD ++ACVG GSNA+G+F+ +IN E VRLIGVEAAG G+++G+H+A+L  G  GV HG  +YLLQDE+GQI+ THSV  GL+YPGVGPE ++L+D GRAE+   TD EA+ A+  LCR+EGI PALE+SHALA+  KL PTL     ++VN SG GDKD+ TV
Sbjct:  172 KDALNEAMRDWVTNIHNTFYIIGTVAGPHPYPMLVRDFQKIIGEECLVQMPEMTGRQPDAVIACVGGGSNAMGIFYPYINVEGVRLIGVEAAGDGMETGRHSASLTAGVPGVLHGNRTYLLQDEDGQIIETHSVSAGLDYPGVGPEHAWLKDLGRAEYQPVTDSEALAAFHTLCRIEGIIPALESSHALAYAAKLAPTLAKDKILLVNLSGRGDKDMHTV 391          
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_PSEPU (Tryptophan synthase beta chain OS=Pseudomonas putida GN=trpB PE=3 SV=1)

HSP 1 Score: 265.774 bits (678), Expect = 2.113e-70
Identity = 129/226 (57.08%), Postives = 163/226 (72.12%), Query Frame = -1
Query:  135 GCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNY 812
            G  K+A +EA+R+WV N+E ++YL GTV GPHP P MVR+FQSIIGKETR Q  EK G  PD L+ACVG GSNA+GLFHEF+ +  V++IGVEA G G+ + KHAA+L  G  GV HG  +YLLQDE+GQI   HS+  GL+YPG+GPE ++L +  R E+ + TD EA+ A+   CRLEGI PALE+SHALA   K  P LP    +VV  SG GDKD+ TV+N+
Sbjct:  172 GTLKDAMNEALRDWVTNVEDTFYLIGTVAGPHPYPAMVRDFQSIIGKETRAQLQEKEGRLPDSLVACVGGGSNAMGLFHEFLEEPSVQIIGVEAGGHGVHTDKHAASLNGGVPGVLHGNRTYLLQDEDGQITDAHSISAGLDYPGIGPEHAYLHEVKRVEYVSITDDEALDAFHATCRLEGIIPALESSHALAEAIKRAPKLPKDHLMVVCLSGRGDKDMQTVMNH 397          
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_PSEE4 (Tryptophan synthase beta chain OS=Pseudomonas entomophila (strain L48) GN=trpB PE=3 SV=1)

HSP 1 Score: 265.388 bits (677), Expect = 2.759e-70
Identity = 127/226 (56.19%), Postives = 164/226 (72.57%), Query Frame = -1
Query:  135 GCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNY 812
            G  K+A +EA+R+WV N+E ++YL GTV GPHP P MVR+FQSIIGKETR Q  EK G  PD L+ACVG GSNA+GLFH+F++D  V++IGVEA G G+ + KHAA+L  G  GV HG  +YLLQD++GQI   HS+  GL+YPG+GPE ++L +  R E+ + TD EA+ A+   CRLEGI PALE+SHALA   K  P LP    +V+  SG GDKD+ TV+N+
Sbjct:  172 GTLKDAMNEALRDWVTNVEDTFYLIGTVAGPHPYPAMVRDFQSIIGKETRAQLQEKEGRLPDSLIACVGGGSNAMGLFHDFLDDASVQIIGVEAGGHGVHTDKHAASLNGGVPGVLHGNRTYLLQDDDGQITDAHSISAGLDYPGIGPEHAYLHEVKRVEYVSITDDEALDAFHATCRLEGIIPALESSHALAEAIKRAPKLPKDHLMVICLSGRGDKDMQTVMNH 397          
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB1_PYRFU (Tryptophan synthase beta chain 1 OS=Pyrococcus furiosus GN=trpB1 PE=1 SV=1)

HSP 1 Score: 265.003 bits (676), Expect = 3.604e-70
Identity = 123/226 (54.42%), Postives = 170/226 (75.22%), Query Frame = -1
Query:  126 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNYRYN 803
            K+A +EA+R+WV   E ++YL G+VVGPHP P +VR+FQS+IG+E + Q +E  G  PDV++ACVG GSNA+G+F+ F+ND+ V+L+GVEA G GL+SGKH+A+L  G+VGV+HG +SY LQDEEGQI  THS+  GL+YPGVGPE ++L+   RAE+ T TD+EA++A+  L R EGI PALE++HA+A+  KL   +     ++VN SG GDKD+D V+    N
Sbjct:  162 KDAINEALRDWVATFEYTHYLIGSVVGPHPYPTIVRDFQSVIGREAKAQILEAEGQLPDVIVACVGGGSNAMGIFYPFVNDKKVKLVGVEAGGKGLESGKHSASLNAGQVGVFHGMLSYFLQDEEGQIKPTHSIAPGLDYPGVGPEHAYLKKIQRAEYVTVTDEEALKAFHELSRTEGIIPALESAHAVAYAMKLAKEMSRDEIIIVNLSGRGDKDLDIVLKVSGN 387          
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_PSEPK (Tryptophan synthase beta chain OS=Pseudomonas putida (strain KT2440) GN=trpB PE=3 SV=1)

HSP 1 Score: 264.618 bits (675), Expect = 4.707e-70
Identity = 128/226 (56.64%), Postives = 163/226 (72.12%), Query Frame = -1
Query:  135 GCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNY 812
            G  K+A +EA+R+WV N+E ++YL GTV GPHP P MVR+FQSIIGKETR Q  EK G  PD L+ACVG GSNA+GLFHEF+ +  V++IGVEA G G+ + KHAA+L  G  GV HG  +YLLQD++GQI   HS+  GL+YPG+GPE ++L +  R E+ + TD EA+ A+   CRLEGI PALE+SHALA   K  P LP    +VV  SG GDKD+ TV+N+
Sbjct:  172 GTLKDAMNEALRDWVTNVEDTFYLIGTVAGPHPYPAMVRDFQSIIGKETRAQLQEKEGRLPDSLVACVGGGSNAMGLFHEFLEEPSVQIIGVEAGGHGVHTDKHAASLNGGVPGVLHGNRTYLLQDQDGQITDAHSISAGLDYPGIGPEHAYLHEVKRVEYVSITDDEALDAFHATCRLEGIIPALESSHALAEAIKRAPKLPKDHLMVVCLSGRGDKDMQTVMNH 397          
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_PSEP1 (Tryptophan synthase beta chain OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=trpB PE=3 SV=1)

HSP 1 Score: 264.618 bits (675), Expect = 4.707e-70
Identity = 128/226 (56.64%), Postives = 163/226 (72.12%), Query Frame = -1
Query:  135 GCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNY 812
            G  K+A +EA+R+WV N+E ++YL GTV GPHP P MVR+FQSIIGKETR Q  EK G  PD L+ACVG GSNA+GLFHEF+ +  V++IGVEA G G+ + KHAA+L  G  GV HG  +YLLQD++GQI   HS+  GL+YPG+GPE ++L +  R E+ + TD EA+ A+   CRLEGI PALE+SHALA   K  P LP    +VV  SG GDKD+ TV+N+
Sbjct:  172 GTLKDAMNEALRDWVTNVEDTFYLIGTVAGPHPYPAMVRDFQSIIGKETRAQLQEKEGRLPDSLVACVGGGSNAMGLFHEFLEEPSVQIIGVEAGGHGVHTDKHAASLNGGVPGVLHGNRTYLLQDQDGQITDAHSISAGLDYPGIGPEHAYLHEVKRVEYVSITDDEALDAFHATCRLEGIIPALESSHALAEAIKRAPKLPKDHLMVVCLSGRGDKDMQTVMNH 397          
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_ALKMQ (Tryptophan synthase beta chain OS=Alkaliphilus metalliredigens (strain QYMF) GN=trpB PE=3 SV=1)

HSP 1 Score: 264.618 bits (675), Expect = 4.707e-70
Identity = 123/220 (55.91%), Postives = 166/220 (75.45%), Query Frame = -1
Query:  144 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTV 803
            K+A++EAIR+WV N++ +YY+ G+VVGPHP P MVR+FQ IIG E ++Q +EK G  P+ L+ACVG GSNA+GLF+ F  DE V L GVEAAG G+++ +HAAT+ KG +GV HG M+YLLQDE+GQI   HS+  GL+YPG+GPE ++   TGRA +   TD+EA++A+Q L RLEGI PALE++HA+A+L KL P       +V+N SG GDKD+ T+
Sbjct:  170 KDATNEAIRDWVANVKDTYYVIGSVVGPHPYPTMVRDFQRIIGDEVKEQILEKEGRLPNYLVACVGGGSNAMGLFYPFYEDEAVALYGVEAAGLGVETDQHAATITKGSMGVIHGMMTYLLQDEQGQITPVHSISAGLDYPGIGPEHAYYHHTGRANYVAITDEEALEAFQLLTRLEGIIPALESAHAIAYLMKLAPKTKGDDIIVLNLSGRGDKDIHTI 389          
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_METCA (Tryptophan synthase beta chain OS=Methylococcus capsulatus GN=trpB PE=3 SV=1)

HSP 1 Score: 264.233 bits (674), Expect = 6.147e-70
Identity = 120/220 (54.55%), Postives = 170/220 (77.27%), Query Frame = -1
Query:  144 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTV 803
            K+A +EA+R+WV N++ ++Y+ GTV GPHP P MVR+FQ++IG+E R+Q +E  G  PD L+ACVG GSNA+GLFH F++D +V + GVEAAG G+++G+H+A L+ G  GV HG  +YL++DE+G+I+ THS+  GL+YPGVGPE ++L+D GRA + +ATD EA++A+  L R EGI PALE+SHA+A+  KL PTL +   V+VN SG GDKD+ T+
Sbjct:  178 KDALNEAMRDWVTNVDDTFYIIGTVAGPHPYPAMVRDFQAVIGREARRQMLEMTGRLPDALVACVGGGSNAIGLFHPFVDDREVAMYGVEAAGDGIETGRHSAPLSAGRPGVLHGNRTYLMEDEDGEIIETHSISAGLDYPGVGPEHAWLKDCGRASYVSATDAEALEAFHILTRSEGIIPALESSHAVAYALKLAPTLSSDKIVLVNLSGRGDKDIHTI 397          
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_PSEPG (Tryptophan synthase beta chain OS=Pseudomonas putida (strain GB-1) GN=trpB PE=3 SV=1)

HSP 1 Score: 263.462 bits (672), Expect = 1.049e-69
Identity = 128/226 (56.64%), Postives = 162/226 (71.68%), Query Frame = -1
Query:  135 GCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNY 812
            G  K+A +EA+R+WV N+E ++YL GTV GPHP P MVR+FQSIIGKETR Q  EK G  PD L+ACVG GSNA+GLFHEF+ +  V++IGVEA G G+ + KHAA+L  G  GV HG  +YLLQD +GQI   HS+  GL+YPG+GPE ++L +  R E+ + TD EA+ A+   CRLEGI PALE+SHALA   K  P LP    +VV  SG GDKD+ TV+N+
Sbjct:  172 GTLKDAMNEALRDWVTNVEDTFYLIGTVAGPHPYPAMVRDFQSIIGKETRAQLQEKEGRLPDSLVACVGGGSNAMGLFHEFLEEPSVQIIGVEAGGHGVHTDKHAASLNGGVPGVLHGNRTYLLQDADGQITDAHSISAGLDYPGIGPEHAYLHEVKRVEYVSITDDEALDAFHATCRLEGIIPALESSHALAEAIKRAPKLPKDHLMVVCLSGRGDKDMQTVMNH 397          
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_ACICJ (Tryptophan synthase beta chain OS=Acidiphilium cryptum (strain JF-5) GN=trpB PE=3 SV=1)

HSP 1 Score: 263.462 bits (672), Expect = 1.049e-69
Identity = 125/223 (56.05%), Postives = 164/223 (73.54%), Query Frame = -1
Query:  135 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNY 803
            K+A +EA+R+WV N+  ++Y+ GT  GPHP P MVR+FQS+IG E R Q ME  G  PDV +A +G GSNA+GLFH F+ DE V+LIGVEAAG GLDSG+HAA+L++G  GV HG  +YLLQD++GQIL  HS+  GL+YPG+GPE S+L D GR E+ +ATD EA+ A+Q  CR EGI PALE SHALA + K+ P +   + +++N  G GDKD+ TV  +
Sbjct:  178 KDAMNEALRDWVANVRDTFYIIGTAAGPHPYPAMVRDFQSVIGVEARAQMMEAEGRLPDVAIAAIGGGSNAIGLFHAFL-DEQVKLIGVEAAGRGLDSGEHAASLSRGRPGVLHGNRTYLLQDDDGQILEAHSISAGLDYPGIGPEHSYLHDIGRVEYVSATDDEALAAFQLCCRTEGIIPALEPSHALAHVAKIAPGMDKESIILMNLCGRGDKDIFTVARH 399          
The following BLAST results are available for this feature:
BLAST of CX043276 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 441
Match NameE-valueIdentityDescription
TRPB_DECAR1.618e-7057.27Tryptophan synthase beta chain OS=Dechloromonas ar... [more]
TRPB_PSEPU2.113e-7057.08Tryptophan synthase beta chain OS=Pseudomonas puti... [more]
TRPB_PSEE42.759e-7056.19Tryptophan synthase beta chain OS=Pseudomonas ento... [more]
TRPB1_PYRFU3.604e-7054.42Tryptophan synthase beta chain 1 OS=Pyrococcus fur... [more]
TRPB_PSEPK4.707e-7056.64Tryptophan synthase beta chain OS=Pseudomonas puti... [more]
TRPB_PSEP14.707e-7056.64Tryptophan synthase beta chain OS=Pseudomonas puti... [more]
TRPB_ALKMQ4.707e-7055.91Tryptophan synthase beta chain OS=Alkaliphilus met... [more]
TRPB_METCA6.147e-7054.55Tryptophan synthase beta chain OS=Methylococcus ca... [more]
TRPB_PSEPG1.049e-6956.64Tryptophan synthase beta chain OS=Pseudomonas puti... [more]
TRPB_ACICJ1.049e-6956.05Tryptophan synthase beta chain OS=Acidiphilium cry... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_10A07_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-10A07-B14-1-7.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043276 ID=CX043276; Name=CX043276; organism=Citrus sinensis; type=EST; length=821bp
TTTTTTGAGAAAAATAGGTCTTAAATTAATAGATTTCTCGGGTTGCTGCT
AAATTGACGGGAACCCTTAAATATTGTGGTCACCACTTCTTCGATCCATT
ACAATTTCTACGTCGATAATTATTGATTGTATCTGTAATTGACGACCGTG
TCGACGTCCTTATCCCCACCTCCACTACAGTTGACAACAACTTTTGCACC
ATTAGGTAAAGTAGGGCAAAGTTTCTCTAGAAATGCTAATGCATGAGATG
CCTCAAGGGCCGGAAATATGCCTTCTAATCTGCACAGCCGTTGATATGCT
TGGACAGCTTCTTGGTCAGTCGCAGTGTAGAACTCCGCACGCCCAGTGTC
CCTAAGAAAGCTTATCTCCGGGCCAACTCCTGGATACTCTAGCCCTACAC
CGACAGAATGAGTCCCCAAGATTTGGCCTTCTTCATCTTGCAACAAGTAG
CTCATGGCTCCATGATAAACACCCACTTCCCCTTTAGCCAGAGTTGCAGC
GTGTTTGCCGCTGTCCAAGCCAAATCCAGCAGCCTCCACTCCAATCAATC
TCACATCTTCATCATTTATGAATTCATGAAACAAACCCAACGCATTTGAT
CCACTGCCCACACAAGCCAGCAATACATCAGGCTTGCCTCCCCATTTTTC
CATTGCTTGTTTTCTCGTTTCTTTGCCTATGATTGATTGAAATTCTCGTA
CCATTATTGGACACGGGTGAGGCCCCACCACCGTACCCGTTAAATAATAG
CTTTTTTCTAAGTTCCCCACCCAATTTCTGATAGCTTCTGAGCTTGCTTC
TTTGAAACATCCATCCACTGC
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