CX043276

Overview
NameCX043276
Unique NameCX043276
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length821
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2462 contig Csv1_Contig2462:113..935. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_ACICA (Tryptophan synthase beta chain OS=Acinetobacter calcoaceticus GN=trpB PE=3 SV=2)

HSP 1 Score: 263.462 bits (672), Expect = 1.049e-69
Identity = 120/220 (54.55%), Postives = 166/220 (75.45%), Query Frame = -1
Query:  144 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTV 803
            K+A +EA+R+WV N++ +YY+ GTV GPHP P +VR+FQSIIG+E R+Q  E+ G  PD L+ACVG GSNA+GLF+ F+ND+DV++ GVEAAG G+++GKH+A L  G VGV HG  +YL+ D +GQI+ THS+  GL+YPGVGPE SFL+D  R E+    D EA+Q ++ L R+EGI PA+E++HA+A++ KL PT+     ++ N SG GDKD+ TV
Sbjct:  173 KDAMNEAMRDWVTNVDSTYYVIGTVAGPHPYPQLVRDFQSIIGREARRQIQEQAGRLPDALVACVGGGSNAIGLFYPFLNDQDVKMYGVEAAGHGIETGKHSAPLNAGHVGVLHGNRTYLMSDPQGQIIETHSISAGLDYPGVGPEHSFLKDMHRVEYVPIDDNEALQGFRDLTRIEGIIPAIESAHAMAYVTKLAPTMDKDQIIIANVSGRGDKDLMTV 392          
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_ACIAD (Tryptophan synthase beta chain OS=Acinetobacter sp. (strain ADP1) GN=trpB PE=3 SV=1)

HSP 1 Score: 263.462 bits (672), Expect = 1.049e-69
Identity = 120/220 (54.55%), Postives = 166/220 (75.45%), Query Frame = -1
Query:  144 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTV 803
            K+A +EA+R+WV N++ +YY+ GTV GPHP P +VR+FQSIIG+E R+Q  E+ G  PD L+ACVG GSNA+GLF+ F+ND+DV++ GVEAAG G+++GKH+A L  G VGV HG  +YL+ D +GQI+ THS+  GL+YPGVGPE SFL+D  R E+    D EA+Q ++ L R+EGI PA+E++HA+A++ KL PT+     ++ N SG GDKD+ TV
Sbjct:  173 KDAMNEAMRDWVTNVDSTYYVIGTVAGPHPYPQLVRDFQSIIGREARRQIQEQAGRLPDALVACVGGGSNAIGLFYPFLNDQDVKMYGVEAAGHGIETGKHSAPLNAGHVGVLHGNRTYLMSDPQGQIIETHSISAGLDYPGVGPEHSFLKDMHRVEYVPIDDNEALQGFRDLTRIEGIIPAIESAHAMAYVTKLAPTMDKDQIIIANVSGRGDKDLMTV 392          
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_THIDA (Tryptophan synthase beta chain OS=Thiobacillus denitrificans (strain ATCC 25259) GN=trpB PE=3 SV=1)

HSP 1 Score: 263.077 bits (671), Expect = 1.369e-69
Identity = 125/220 (56.82%), Postives = 162/220 (73.64%), Query Frame = -1
Query:  144 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTV 803
            K+A +EA+R+WV N+E ++Y+ GT  GPHP P++VR+FQ +IG+E   Q  E  G +PD ++ACVG GSNA+G+FH +I  E+VRLIGVEA G G+ SGKHAA L  G  GV HG  SYL+QDE GQI+ THSV  GL+YPGVGPE S+L+D GRAE+    D EA+ A+  LCR EGI PALE+SHA+A  +KL PT+     ++VN SG GDKD++TV
Sbjct:  172 KDALNEAMRDWVTNVESTFYILGTAAGPHPYPMLVRDFQCVIGRECIAQMPELVGRQPDAVVACVGGGSNAIGIFHPYIPHENVRLIGVEAGGSGVASGKHAAPLTAGTPGVLHGFRSYLMQDENGQIIETHSVSAGLDYPGVGPEHSYLKDAGRAEYVPINDDEALAAFHDLCRFEGIIPALESSHAVAQAKKLAPTMKKDQVILVNLSGRGDKDINTV 391          
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_NITMU (Tryptophan synthase beta chain OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=trpB PE=3 SV=1)

HSP 1 Score: 262.307 bits (669), Expect = 2.336e-69
Identity = 121/220 (55.00%), Postives = 169/220 (76.82%), Query Frame = -1
Query:  144 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTV 803
            K+A +EA+R+WV N+  ++Y+ GTV GPHP P+MVR+FQ+IIG+E   Q  E +G +PD L+ACVG GSNA+GLF+ ++ D  +R+IGVEAAG G+++ +HAATL KG  GV HG  +YL+QDE GQI+ THS+  GL+YPGVGPE ++L+D+GRAE++  TD++A++A+  LC  EGI PALE+SHALA+  +L P L +   ++VN SG GDKD+ TV
Sbjct:  172 KDALNEAMRDWVTNVADTFYIIGTVAGPHPYPMMVRDFQAIIGREAITQMQEDYGRQPDALIACVGGGSNAIGLFYPYL-DSSIRMIGVEAAGHGVETDQHAATLTKGRPGVLHGNRTYLIQDENGQIVETHSISAGLDYPGVGPEHAWLKDSGRAEYFGITDEQALEAFHALCHYEGIIPALESSHALAYAARLAPALTSDKLLLVNLSGRGDKDMPTV 390          
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_CAUCR (Tryptophan synthase beta chain OS=Caulobacter crescentus GN=trpB PE=3 SV=1)

HSP 1 Score: 261.536 bits (667), Expect = 3.984e-69
Identity = 124/223 (55.61%), Postives = 162/223 (72.65%), Query Frame = -1
Query:  144 GCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTV 812
            G  K+A +EA+R+WV N+  +YYL GT  GPHP P+MVR+FQS+IG E R+Q +E  G  PD ++AC+G GSNA+GLFH F+ DE VRLIGVEAAG G+ + KHAA+L  G  GV HG  +YLLQD++GQI+  HS+  GL+YPG+GPE SFL D GRAE+ + TD EA++A++    LEGI PALE +HALA + ++   L  G  VV+N  G GDKD+ TV
Sbjct:  176 GTLKDAMNEAMRDWVTNVHDTYYLIGTAAGPHPYPVMVRDFQSVIGAEAREQILEMEGRLPDAVVACIGGGSNAIGLFHPFLGDEGVRLIGVEAAGHGVSTDKHAASLTGGRPGVLHGNRTYLLQDDDGQIIDAHSISAGLDYPGIGPEHSFLHDIGRAEYVSTTDTEALEAFKLCSTLEGIIPALEPAHALARVGEIAQELGKGKIVVMNLCGRGDKDIFTV 398          
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_POLNA (Tryptophan synthase beta chain OS=Polaromonas naphthalenivorans (strain CJ2) GN=trpB PE=3 SV=1)

HSP 1 Score: 259.996 bits (663), Expect = 1.159e-68
Identity = 122/223 (54.71%), Postives = 168/223 (75.34%), Query Frame = -1
Query:  138 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGK-PDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVN 803
            K+A +EA+R+WV N++ ++Y+ GTV GPHP P+MVR+FQS+IG E   Q  E   G+ PD ++ACVG GSNA+G+FH +I  E+ RLIGVEAAG GLDSGKH+A+L +G  GV HG  +Y+LQ+++GQ+  THS+  GL+YPGVGPE ++L+D GRAE+   TD EA+QA+  LCR EGI PALE++HA+A+  KL  T+ +   ++VN SG GDKD+ TV +
Sbjct:  172 KDALNEAMRDWVANVDNTFYIIGTVAGPHPYPMMVRDFQSVIGTECLSQMPEMNAGRQPDAVVACVGGGSNAMGIFHPYIAHENTRLIGVEAAGEGLDSGKHSASLQRGLPGVLHGNRTYVLQNDDGQVTETHSISAGLDYPGVGPEHAYLKDIGRAEYVGITDTEALQAFHYLCRTEGIIPALESAHAVAYAMKLAKTMRSDQSILVNLSGRGDKDIGTVAD 394          
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_RHOFD (Tryptophan synthase beta chain OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=trpB PE=3 SV=1)

HSP 1 Score: 259.61 bits (662), Expect = 1.514e-68
Identity = 124/228 (54.39%), Postives = 165/228 (72.37%), Query Frame = -1
Query:  138 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGG------KPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVN 803
            K+A +EA+R+WV N++ ++Y+ GTV GPHP P+MVR+FQS+IGKE   Q  E          +PD ++ACVG GSNA+G+FH +I  E  RLIGVEAAG G+DSGKH+A+L +G  GV HG  +Y+LQD+ GQ+  THS+  GL+YPGVGPE +FL+D GRAE+   TDQEA+ A+  LCR EGI PALE+SHA+A+  KL  T+     ++VN SG GDKD+ TV +
Sbjct:  172 KDALNEAMRDWVANVDNTFYIIGTVAGPHPYPMMVRDFQSVIGKECLVQMPEMLQAAGCHTTQPDAVVACVGGGSNAMGIFHPYIAHEATRLIGVEAAGLGMDSGKHSASLQRGSPGVLHGNRTYVLQDDNGQVTETHSISAGLDYPGVGPEHAFLKDIGRAEYVGITDQEALAAFHYLCRTEGIIPALESSHAVAYAMKLAKTMRPDQSILVNLSGRGDKDIGTVAD 399          
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_METFK (Tryptophan synthase beta chain OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=trpB PE=3 SV=1)

HSP 1 Score: 259.61 bits (662), Expect = 1.514e-68
Identity = 122/223 (54.71%), Postives = 167/223 (74.89%), Query Frame = -1
Query:  138 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATL-AKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVN 803
            K+A +EA+R+WV N+  ++Y+ GTV GPHP P+MVR+FQ++IG E ++Q  E  G +PD ++ACVG GSNA+G+F+ +I+ E VRLIGVEAAG G+D+G+HAA L A    GV HG  +YL+QDE GQI+ THS+  GL+YPGVGPE ++L+D  RAE+   TD EA++A+  LCR EGI PALE+SHALA+  KL  T+     ++VN SG GDKD++TV +
Sbjct:  172 KDALNEAMRDWVTNISNTFYIIGTVAGPHPYPMMVRDFQAVIGTEAKQQMQELIGRQPDAVIACVGGGSNAMGIFYPYIDVEGVRLIGVEAAGHGIDTGRHAAPLTANSPAGVLHGNRTYLMQDENGQIIETHSISAGLDYPGVGPEHAWLKDIKRAEYVAVTDDEAMEAFHTLCRTEGIIPALESSHALAYAMKLAETMSPDQALLVNLSGRGDKDINTVAS 394          
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_EXIS2 (Tryptophan synthase beta chain OS=Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15) GN=trpB PE=3 SV=1)

HSP 1 Score: 259.225 bits (661), Expect = 1.977e-68
Identity = 123/222 (55.41%), Postives = 168/222 (75.68%), Query Frame = -1
Query:  138 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVN 803
            K+A +EA+R WV +++ ++YL G+V+GPHP P +VR+FQ++IG+ETR Q +EK G  P+ ++ACVG GSNA+G+FH FI+DE+V L G+EAAG GL++ KHAAT++KGEVGV HG+M YLLQDE GQ+   HS+  GL+YPGVGPE S L+D GR ++   TDQ+A+ A Q LC+ EGI PALE++HA+A  ++L   +     VV+  SG GDKDV TV N
Sbjct:  172 KDAVNEALRYWVKHVDDTHYLMGSVLGPHPFPEIVRDFQAVIGQETRTQILEKEGKLPEAIVACVGGGSNAIGMFHPFIDDEEVALYGIEAAGSGLETEKHAATMSKGEVGVLHGSMMYLLQDEHGQVTEAHSISAGLDYPGVGPEHSLLKDIGRVQYEAVTDQQALDALQLLCQKEGIIPALESAHAVAHAKELARGMQPEEVVVICLSGRGDKDVMTVRN 393          
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_LISW6 (Tryptophan synthase beta chain OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=trpB PE=3 SV=1)

HSP 1 Score: 258.455 bits (659), Expect = 3.373e-68
Identity = 122/218 (55.96%), Postives = 166/218 (76.15%), Query Frame = -1
Query:  150 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVD 803
            K+A +EA+R WV N+E ++Y+ G+V+GPHP P +VR++QS+IG E RKQ MEK G  P+ ++ACVG GSNA+GLF+ F++D  V++ GVEAAG GL++  HAAT++KGE+G+ HGAM  +LQDE GQIL   S+  GL+YPG+GPE SF RD GRAE+++ TD EAV+A+Q LCR EGI PALE+SHA+++  KL   +     +VV  SG GDKDV+
Sbjct:  171 KDAVNEALRFWVANVEDTHYIMGSVLGPHPFPEIVRDYQSVIGIEARKQHMEKEGKLPEAIVACVGGGSNAMGLFYPFVDDSSVQMHGVEAAGHGLETEFHAATISKGEIGILHGAMMDVLQDENGQILEAFSISAGLDYPGIGPEHSFFRDLGRAEYHSVTDDEAVEAFQLLCRTEGIIPALESSHAISYAVKLASKMRPEESMVVCLSGRGDKDVN 388          
The following BLAST results are available for this feature:
BLAST of CX043276 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 441
Match NameE-valueIdentityDescription
TRPB_ACICA1.049e-6954.55Tryptophan synthase beta chain OS=Acinetobacter ca... [more]
TRPB_ACIAD1.049e-6954.55Tryptophan synthase beta chain OS=Acinetobacter sp... [more]
TRPB_THIDA1.369e-6956.82Tryptophan synthase beta chain OS=Thiobacillus den... [more]
TRPB_NITMU2.336e-6955.00Tryptophan synthase beta chain OS=Nitrosospira mul... [more]
TRPB_CAUCR3.984e-6955.61Tryptophan synthase beta chain OS=Caulobacter cres... [more]
TRPB_POLNA1.159e-6854.71Tryptophan synthase beta chain OS=Polaromonas naph... [more]
TRPB_RHOFD1.514e-6854.39Tryptophan synthase beta chain OS=Rhodoferax ferri... [more]
TRPB_METFK1.514e-6854.71Tryptophan synthase beta chain OS=Methylobacillus ... [more]
TRPB_EXIS21.977e-6855.41Tryptophan synthase beta chain OS=Exiguobacterium ... [more]
TRPB_LISW63.373e-6855.96Tryptophan synthase beta chain OS=Listeria welshim... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_10A07_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-10A07-B14-1-7.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043276 ID=CX043276; Name=CX043276; organism=Citrus sinensis; type=EST; length=821bp
TTTTTTGAGAAAAATAGGTCTTAAATTAATAGATTTCTCGGGTTGCTGCT
AAATTGACGGGAACCCTTAAATATTGTGGTCACCACTTCTTCGATCCATT
ACAATTTCTACGTCGATAATTATTGATTGTATCTGTAATTGACGACCGTG
TCGACGTCCTTATCCCCACCTCCACTACAGTTGACAACAACTTTTGCACC
ATTAGGTAAAGTAGGGCAAAGTTTCTCTAGAAATGCTAATGCATGAGATG
CCTCAAGGGCCGGAAATATGCCTTCTAATCTGCACAGCCGTTGATATGCT
TGGACAGCTTCTTGGTCAGTCGCAGTGTAGAACTCCGCACGCCCAGTGTC
CCTAAGAAAGCTTATCTCCGGGCCAACTCCTGGATACTCTAGCCCTACAC
CGACAGAATGAGTCCCCAAGATTTGGCCTTCTTCATCTTGCAACAAGTAG
CTCATGGCTCCATGATAAACACCCACTTCCCCTTTAGCCAGAGTTGCAGC
GTGTTTGCCGCTGTCCAAGCCAAATCCAGCAGCCTCCACTCCAATCAATC
TCACATCTTCATCATTTATGAATTCATGAAACAAACCCAACGCATTTGAT
CCACTGCCCACACAAGCCAGCAATACATCAGGCTTGCCTCCCCATTTTTC
CATTGCTTGTTTTCTCGTTTCTTTGCCTATGATTGATTGAAATTCTCGTA
CCATTATTGGACACGGGTGAGGCCCCACCACCGTACCCGTTAAATAATAG
CTTTTTTCTAAGTTCCCCACCCAATTTCTGATAGCTTCTGAGCTTGCTTC
TTTGAAACATCCATCCACTGC
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