CX043276
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_ACICA (Tryptophan synthase beta chain OS=Acinetobacter calcoaceticus GN=trpB PE=3 SV=2) HSP 1 Score: 263.462 bits (672), Expect = 1.049e-69 Identity = 120/220 (54.55%), Postives = 166/220 (75.45%), Query Frame = -1 Query: 144 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTV 803 K+A +EA+R+WV N++ +YY+ GTV GPHP P +VR+FQSIIG+E R+Q E+ G PD L+ACVG GSNA+GLF+ F+ND+DV++ GVEAAG G+++GKH+A L G VGV HG +YL+ D +GQI+ THS+ GL+YPGVGPE SFL+D R E+ D EA+Q ++ L R+EGI PA+E++HA+A++ KL PT+ ++ N SG GDKD+ TV Sbjct: 173 KDAMNEAMRDWVTNVDSTYYVIGTVAGPHPYPQLVRDFQSIIGREARRQIQEQAGRLPDALVACVGGGSNAIGLFYPFLNDQDVKMYGVEAAGHGIETGKHSAPLNAGHVGVLHGNRTYLMSDPQGQIIETHSISAGLDYPGVGPEHSFLKDMHRVEYVPIDDNEALQGFRDLTRIEGIIPAIESAHAMAYVTKLAPTMDKDQIIIANVSGRGDKDLMTV 392
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_ACIAD (Tryptophan synthase beta chain OS=Acinetobacter sp. (strain ADP1) GN=trpB PE=3 SV=1) HSP 1 Score: 263.462 bits (672), Expect = 1.049e-69 Identity = 120/220 (54.55%), Postives = 166/220 (75.45%), Query Frame = -1 Query: 144 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTV 803 K+A +EA+R+WV N++ +YY+ GTV GPHP P +VR+FQSIIG+E R+Q E+ G PD L+ACVG GSNA+GLF+ F+ND+DV++ GVEAAG G+++GKH+A L G VGV HG +YL+ D +GQI+ THS+ GL+YPGVGPE SFL+D R E+ D EA+Q ++ L R+EGI PA+E++HA+A++ KL PT+ ++ N SG GDKD+ TV Sbjct: 173 KDAMNEAMRDWVTNVDSTYYVIGTVAGPHPYPQLVRDFQSIIGREARRQIQEQAGRLPDALVACVGGGSNAIGLFYPFLNDQDVKMYGVEAAGHGIETGKHSAPLNAGHVGVLHGNRTYLMSDPQGQIIETHSISAGLDYPGVGPEHSFLKDMHRVEYVPIDDNEALQGFRDLTRIEGIIPAIESAHAMAYVTKLAPTMDKDQIIIANVSGRGDKDLMTV 392
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_THIDA (Tryptophan synthase beta chain OS=Thiobacillus denitrificans (strain ATCC 25259) GN=trpB PE=3 SV=1) HSP 1 Score: 263.077 bits (671), Expect = 1.369e-69 Identity = 125/220 (56.82%), Postives = 162/220 (73.64%), Query Frame = -1 Query: 144 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTV 803 K+A +EA+R+WV N+E ++Y+ GT GPHP P++VR+FQ +IG+E Q E G +PD ++ACVG GSNA+G+FH +I E+VRLIGVEA G G+ SGKHAA L G GV HG SYL+QDE GQI+ THSV GL+YPGVGPE S+L+D GRAE+ D EA+ A+ LCR EGI PALE+SHA+A +KL PT+ ++VN SG GDKD++TV Sbjct: 172 KDALNEAMRDWVTNVESTFYILGTAAGPHPYPMLVRDFQCVIGRECIAQMPELVGRQPDAVVACVGGGSNAIGIFHPYIPHENVRLIGVEAGGSGVASGKHAAPLTAGTPGVLHGFRSYLMQDENGQIIETHSVSAGLDYPGVGPEHSYLKDAGRAEYVPINDDEALAAFHDLCRFEGIIPALESSHAVAQAKKLAPTMKKDQVILVNLSGRGDKDINTV 391
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_NITMU (Tryptophan synthase beta chain OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=trpB PE=3 SV=1) HSP 1 Score: 262.307 bits (669), Expect = 2.336e-69 Identity = 121/220 (55.00%), Postives = 169/220 (76.82%), Query Frame = -1 Query: 144 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTV 803 K+A +EA+R+WV N+ ++Y+ GTV GPHP P+MVR+FQ+IIG+E Q E +G +PD L+ACVG GSNA+GLF+ ++ D +R+IGVEAAG G+++ +HAATL KG GV HG +YL+QDE GQI+ THS+ GL+YPGVGPE ++L+D+GRAE++ TD++A++A+ LC EGI PALE+SHALA+ +L P L + ++VN SG GDKD+ TV Sbjct: 172 KDALNEAMRDWVTNVADTFYIIGTVAGPHPYPMMVRDFQAIIGREAITQMQEDYGRQPDALIACVGGGSNAIGLFYPYL-DSSIRMIGVEAAGHGVETDQHAATLTKGRPGVLHGNRTYLIQDENGQIVETHSISAGLDYPGVGPEHAWLKDSGRAEYFGITDEQALEAFHALCHYEGIIPALESSHALAYAARLAPALTSDKLLLVNLSGRGDKDMPTV 390
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_CAUCR (Tryptophan synthase beta chain OS=Caulobacter crescentus GN=trpB PE=3 SV=1) HSP 1 Score: 261.536 bits (667), Expect = 3.984e-69 Identity = 124/223 (55.61%), Postives = 162/223 (72.65%), Query Frame = -1 Query: 144 GCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTV 812 G K+A +EA+R+WV N+ +YYL GT GPHP P+MVR+FQS+IG E R+Q +E G PD ++AC+G GSNA+GLFH F+ DE VRLIGVEAAG G+ + KHAA+L G GV HG +YLLQD++GQI+ HS+ GL+YPG+GPE SFL D GRAE+ + TD EA++A++ LEGI PALE +HALA + ++ L G VV+N G GDKD+ TV Sbjct: 176 GTLKDAMNEAMRDWVTNVHDTYYLIGTAAGPHPYPVMVRDFQSVIGAEAREQILEMEGRLPDAVVACIGGGSNAIGLFHPFLGDEGVRLIGVEAAGHGVSTDKHAASLTGGRPGVLHGNRTYLLQDDDGQIIDAHSISAGLDYPGIGPEHSFLHDIGRAEYVSTTDTEALEAFKLCSTLEGIIPALEPAHALARVGEIAQELGKGKIVVMNLCGRGDKDIFTV 398
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_POLNA (Tryptophan synthase beta chain OS=Polaromonas naphthalenivorans (strain CJ2) GN=trpB PE=3 SV=1) HSP 1 Score: 259.996 bits (663), Expect = 1.159e-68 Identity = 122/223 (54.71%), Postives = 168/223 (75.34%), Query Frame = -1 Query: 138 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGK-PDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVN 803 K+A +EA+R+WV N++ ++Y+ GTV GPHP P+MVR+FQS+IG E Q E G+ PD ++ACVG GSNA+G+FH +I E+ RLIGVEAAG GLDSGKH+A+L +G GV HG +Y+LQ+++GQ+ THS+ GL+YPGVGPE ++L+D GRAE+ TD EA+QA+ LCR EGI PALE++HA+A+ KL T+ + ++VN SG GDKD+ TV + Sbjct: 172 KDALNEAMRDWVANVDNTFYIIGTVAGPHPYPMMVRDFQSVIGTECLSQMPEMNAGRQPDAVVACVGGGSNAMGIFHPYIAHENTRLIGVEAAGEGLDSGKHSASLQRGLPGVLHGNRTYVLQNDDGQVTETHSISAGLDYPGVGPEHAYLKDIGRAEYVGITDTEALQAFHYLCRTEGIIPALESAHAVAYAMKLAKTMRSDQSILVNLSGRGDKDIGTVAD 394
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_RHOFD (Tryptophan synthase beta chain OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=trpB PE=3 SV=1) HSP 1 Score: 259.61 bits (662), Expect = 1.514e-68 Identity = 124/228 (54.39%), Postives = 165/228 (72.37%), Query Frame = -1 Query: 138 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGG------KPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVN 803 K+A +EA+R+WV N++ ++Y+ GTV GPHP P+MVR+FQS+IGKE Q E +PD ++ACVG GSNA+G+FH +I E RLIGVEAAG G+DSGKH+A+L +G GV HG +Y+LQD+ GQ+ THS+ GL+YPGVGPE +FL+D GRAE+ TDQEA+ A+ LCR EGI PALE+SHA+A+ KL T+ ++VN SG GDKD+ TV + Sbjct: 172 KDALNEAMRDWVANVDNTFYIIGTVAGPHPYPMMVRDFQSVIGKECLVQMPEMLQAAGCHTTQPDAVVACVGGGSNAMGIFHPYIAHEATRLIGVEAAGLGMDSGKHSASLQRGSPGVLHGNRTYVLQDDNGQVTETHSISAGLDYPGVGPEHAFLKDIGRAEYVGITDQEALAAFHYLCRTEGIIPALESSHAVAYAMKLAKTMRPDQSILVNLSGRGDKDIGTVAD 399
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_METFK (Tryptophan synthase beta chain OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=trpB PE=3 SV=1) HSP 1 Score: 259.61 bits (662), Expect = 1.514e-68 Identity = 122/223 (54.71%), Postives = 167/223 (74.89%), Query Frame = -1 Query: 138 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATL-AKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVN 803 K+A +EA+R+WV N+ ++Y+ GTV GPHP P+MVR+FQ++IG E ++Q E G +PD ++ACVG GSNA+G+F+ +I+ E VRLIGVEAAG G+D+G+HAA L A GV HG +YL+QDE GQI+ THS+ GL+YPGVGPE ++L+D RAE+ TD EA++A+ LCR EGI PALE+SHALA+ KL T+ ++VN SG GDKD++TV + Sbjct: 172 KDALNEAMRDWVTNISNTFYIIGTVAGPHPYPMMVRDFQAVIGTEAKQQMQELIGRQPDAVIACVGGGSNAMGIFYPYIDVEGVRLIGVEAAGHGIDTGRHAAPLTANSPAGVLHGNRTYLMQDENGQIIETHSISAGLDYPGVGPEHAWLKDIKRAEYVAVTDDEAMEAFHTLCRTEGIIPALESSHALAYAMKLAETMSPDQALLVNLSGRGDKDINTVAS 394
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_EXIS2 (Tryptophan synthase beta chain OS=Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15) GN=trpB PE=3 SV=1) HSP 1 Score: 259.225 bits (661), Expect = 1.977e-68 Identity = 123/222 (55.41%), Postives = 168/222 (75.68%), Query Frame = -1 Query: 138 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVN 803 K+A +EA+R WV +++ ++YL G+V+GPHP P +VR+FQ++IG+ETR Q +EK G P+ ++ACVG GSNA+G+FH FI+DE+V L G+EAAG GL++ KHAAT++KGEVGV HG+M YLLQDE GQ+ HS+ GL+YPGVGPE S L+D GR ++ TDQ+A+ A Q LC+ EGI PALE++HA+A ++L + VV+ SG GDKDV TV N Sbjct: 172 KDAVNEALRYWVKHVDDTHYLMGSVLGPHPFPEIVRDFQAVIGQETRTQILEKEGKLPEAIVACVGGGSNAIGMFHPFIDDEEVALYGIEAAGSGLETEKHAATMSKGEVGVLHGSMMYLLQDEHGQVTEAHSISAGLDYPGVGPEHSLLKDIGRVQYEAVTDQQALDALQLLCQKEGIIPALESAHAVAHAKELARGMQPEEVVVICLSGRGDKDVMTVRN 393
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_LISW6 (Tryptophan synthase beta chain OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=trpB PE=3 SV=1) HSP 1 Score: 258.455 bits (659), Expect = 3.373e-68 Identity = 122/218 (55.96%), Postives = 166/218 (76.15%), Query Frame = -1 Query: 150 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVD 803 K+A +EA+R WV N+E ++Y+ G+V+GPHP P +VR++QS+IG E RKQ MEK G P+ ++ACVG GSNA+GLF+ F++D V++ GVEAAG GL++ HAAT++KGE+G+ HGAM +LQDE GQIL S+ GL+YPG+GPE SF RD GRAE+++ TD EAV+A+Q LCR EGI PALE+SHA+++ KL + +VV SG GDKDV+ Sbjct: 171 KDAVNEALRFWVANVEDTHYIMGSVLGPHPFPEIVRDYQSVIGIEARKQHMEKEGKLPEAIVACVGGGSNAMGLFYPFVDDSSVQMHGVEAAGHGLETEFHAATISKGEIGILHGAMMDVLQDENGQILEAFSISAGLDYPGIGPEHSFFRDLGRAEYHSVTDDEAVEAFQLLCRTEGIIPALESSHAISYAVKLASKMRPEESMVVCLSGRGDKDVN 388 The following BLAST results are available for this feature:
BLAST of CX043276 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 441
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Sequences
The
following sequences are available for this feature:
EST sequence >CX043276 ID=CX043276; Name=CX043276; organism=Citrus sinensis; type=EST; length=821bpback to top |