CX043276

Overview
NameCX043276
Unique NameCX043276
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length821
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2462 contig Csv1_Contig2462:113..935. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_LISIN (Tryptophan synthase beta chain OS=Listeria innocua GN=trpB PE=3 SV=1)

HSP 1 Score: 258.455 bits (659), Expect = 3.373e-68
Identity = 121/218 (55.50%), Postives = 166/218 (76.15%), Query Frame = -1
Query:  150 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVD 803
            K+A +EA+R WV N+E ++Y+ G+V+GPHP P +VR++QS+IG E RKQ +EK G  P+ ++ACVG GSNA+GLF+ F++D  V++ GVEAAG GL++  HAAT++KGE+G+ HGAM  +LQDE GQIL   S+  GL+YPG+GPE SF RD GRAE+++ TD EAV+A+Q LCR EGI PALE+SHA+++  KL   +     +VV  SG GDKDV+
Sbjct:  171 KDAVNEALRFWVANVEDTHYIMGSVLGPHPFPEIVRDYQSVIGTEARKQHLEKEGKLPEAIVACVGGGSNAMGLFYPFVDDSSVQMHGVEAAGHGLETEFHAATISKGEIGILHGAMMDVLQDENGQILEAFSISAGLDYPGIGPEHSFFRDLGRAEYHSVTDDEAVEAFQLLCRTEGIIPALESSHAISYAVKLASQMRPDESMVVCLSGRGDKDVN 388          
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_RUTMC (Tryptophan synthase beta chain OS=Ruthia magnifica subsp. Calyptogena magnifica GN=trpB PE=3 SV=1)

HSP 1 Score: 258.07 bits (658), Expect = 4.405e-68
Identity = 121/222 (54.50%), Postives = 167/222 (75.23%), Query Frame = -1
Query:  144 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSG--KHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTV 803
            K++ +EA+R+WV N++ ++Y+ GTVVGPHP P+MVR+FQSIIGKET+ Q   + GG PDVL+ACVG GSNA+GLFH FI+D  V + GVEAAG+GL+ G   H+A L  G VGV HG  +YL++DE GQI+  HS+  GL+YPGVGPE ++L+D+GRA +   TD+EA++A+  L ++EGI PALE+SHA+A+  KL   L     +++N SG GDKD+ T+
Sbjct:  172 KDSINEAMRDWVTNIDDTFYIIGTVVGPHPYPMMVRDFQSIIGKETKVQFAAQVGGLPDVLVACVGGGSNAIGLFHAFIDDASVEIYGVEAAGYGLEKGPTAHSAPLCAGSVGVLHGNRTYLMEDENGQIIEGHSISAGLDYPGVGPEHAYLKDSGRARYVAITDKEALEAFHVLTKVEGILPALESSHAVAYGIKLAKELGKDKHIIINLSGRGDKDIHTI 393          
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_PHEZH (Tryptophan synthase beta chain OS=Phenylobacterium zucineum (strain HLK1) GN=trpB PE=3 SV=1)

HSP 1 Score: 257.684 bits (657), Expect = 5.753e-68
Identity = 122/223 (54.71%), Postives = 165/223 (73.99%), Query Frame = -1
Query:  135 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNY 803
            K+A +EA+R+WV N+  +YYL G+  G HP P+MVR+FQ++IG+ETR+Q +E  G  PD L+ACVG GSNA+GLFH F+ND  V++ GVEAAG G+++G+HAA +  G  GV HG M+YLLQD  GQI   HS+  GL+YPG+GPE ++L D GRA + TATD EA++A++ L  LEGI PA+E+SHALA L ++   +     VV+N SG GDKDV+TV +Y
Sbjct:  179 KDAMNEALRDWVTNVHDTYYLIGSAAGMHPYPMMVRDFQAVIGRETREQILELEGRLPDALVACVGGGSNAIGLFHPFLNDSSVKIFGVEAAGEGVETGRHAAAINGGRPGVLHGNMTYLLQDRVGQIEEAHSISAGLDYPGIGPEHAWLHDVGRATYLTATDTEALEAFRLLSELEGILPAIESSHALARLPEITREVGKDGIVVLNLSGRGDKDVNTVASY 401          
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_BACWK (Tryptophan synthase beta chain OS=Bacillus weihenstephanensis (strain KBAB4) GN=trpB PE=3 SV=1)

HSP 1 Score: 257.299 bits (656), Expect = 7.514e-68
Identity = 121/229 (52.84%), Postives = 169/229 (73.80%), Query Frame = -1
Query:  135 AVDGCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNY 821
            A  G  K+A +EA+R WV ++  ++Y+ G+V+GPHP P +VR+FQS+IGKET+KQ     G  P+ ++AC+G GSNA+G+F+ F++DE+V L GVEAAG G+ + KHAATL KG VGV HG+M YLLQ+EEGQI   HS+  GL+YPGVGPE S L+D GR  +++ TD+EA++A+Q L + EGI PALE+SHA+A+  KL P +     +V+  SG GDKDV+++  Y
Sbjct:  165 AGSGTLKDAVNEALRYWVSHVHDTHYIMGSVLGPHPFPQIVRDFQSVIGKETKKQYEALEGKLPEAVVACIGGGSNAMGMFYPFVHDEEVALYGVEAAGKGVHTEKHAATLTKGSVGVLHGSMMYLLQNEEGQIQEAHSISAGLDYPGVGPEHSLLKDIGRVSYHSITDEEALEAFQLLTKKEGIIPALESSHAVAYALKLAPQMKKDEGLVICLSGRGDKDVESIKRY 393          
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_BACC3 (Tryptophan synthase beta chain OS=Bacillus cereus (strain 03BB102) GN=trpB PE=3 SV=1)

HSP 1 Score: 256.914 bits (655), Expect = 9.814e-68
Identity = 121/229 (52.84%), Postives = 168/229 (73.36%), Query Frame = -1
Query:  135 AVDGCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNY 821
            A  G  K+A +EA+R WV ++  ++Y+ G+V+GPHP P +VR+FQS+IG ET+KQ  E  G  P+ ++AC+G GSNA+G+F+ F++DE+V L GVEAAG G+ + KHAATL KG VGV HG+M YLLQ+EEGQI   HS+  GL+YPGVGPE S L+D GR  +++ TD EA++A+Q L + EGI PALE+SHA+A+  KL P +     +V+  SG GDKDV+++  Y
Sbjct:  165 AGSGTLKDAVNEALRYWVSHVHDTHYIMGSVLGPHPFPQIVRDFQSVIGNETKKQYEELEGKLPEAVVACIGGGSNAMGMFYPFVHDEEVALYGVEAAGKGVHTEKHAATLTKGSVGVLHGSMMYLLQNEEGQIQEAHSISAGLDYPGVGPEHSLLKDIGRVSYHSITDDEALEAFQLLTKKEGIIPALESSHAVAYALKLAPQMKEDEGLVICLSGRGDKDVESIKRY 393          
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_BACAH (Tryptophan synthase beta chain OS=Bacillus thuringiensis (strain Al Hakam) GN=trpB PE=3 SV=1)

HSP 1 Score: 256.914 bits (655), Expect = 9.814e-68
Identity = 121/229 (52.84%), Postives = 168/229 (73.36%), Query Frame = -1
Query:  135 AVDGCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNY 821
            A  G  K+A +EA+R WV ++  ++Y+ G+V+GPHP P +VR+FQS+IG ET+KQ  E  G  P+ ++AC+G GSNA+G+F+ F++DE+V L GVEAAG G+ + KHAATL KG VGV HG+M YLLQ+EEGQI   HS+  GL+YPGVGPE S L+D GR  +++ TD EA++A+Q L + EGI PALE+SHA+A+  KL P +     +V+  SG GDKDV+++  Y
Sbjct:  165 AGSGTLKDAVNEALRYWVSHVHDTHYIMGSVLGPHPFPQIVRDFQSVIGNETKKQYEELEGKLPEAVVACIGGGSNAMGMFYPFVHDEEVALYGVEAAGKGVHTEKHAATLTKGSVGVLHGSMMYLLQNEEGQIQEAHSISAGLDYPGVGPEHSLLKDIGRVSYHSITDDEALEAFQLLTKKEGIIPALESSHAVAYALKLAPQMKEDEGLVICLSGRGDKDVESIKRY 393          
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_METJA (Tryptophan synthase beta chain OS=Methanocaldococcus jannaschii GN=trpB PE=3 SV=1)

HSP 1 Score: 256.529 bits (654), Expect = 1.282e-67
Identity = 124/220 (56.36%), Postives = 163/220 (74.09%), Query Frame = -1
Query:  144 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTV 803
            K+A +EA+R+W  N+  +YYL G+ +GPHP P+MVREFQ +IGKE ++Q +EK G  PDV++ACVG GSNA+G F+EF+ D+DV L  VEA G G+++G H A+L  GEVGV HGA  Y+ +DE GQI  ++S+  GL+YPGVGPE+SFL+D GR +    TD EA++A+Q LCRLEGI PALE+SHALA+  KL   L     +V+N SG GDKDV TV
Sbjct:  178 KDAVNEALRDWTTNVRTTYYLLGSALGPHPYPMMVREFQRVIGKELKEQILEKEGRLPDVIVACVGGGSNAIGAFYEFL-DDDVELYAVEAGGKGIETGMHGASLCAGEVGVLHGAKIYVKEDEFGQIEESYSISAGLDYPGVGPELSFLKDEGRIKAVCVTDDEALEAFQLLCRLEGILPALESSHALAYAVKLADKLDKDDIMVINLSGRGDKDVQTV 396          
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_BACCZ (Tryptophan synthase beta chain OS=Bacillus cereus (strain ZK / E33L) GN=trpB PE=3 SV=1)

HSP 1 Score: 256.529 bits (654), Expect = 1.282e-67
Identity = 121/229 (52.84%), Postives = 168/229 (73.36%), Query Frame = -1
Query:  135 AVDGCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNY 821
            A  G  K+A +EA+R WV ++  ++Y+ G+V+GPHP P +VR+FQS+IGKET+KQ     G  P+ ++AC+G GSNA+G+F+ F++DE+V L GVEAAG G+ + KHAATL KG VGV HG+M YLLQ+EEGQI   HS+  GL+YPGVGPE S L+D GR  +++ TD EA++A+Q L + EGI PALE+SHA+A+  KL P +     +V+  SG GDKDV+++  Y
Sbjct:  165 AGSGTLKDAVNEALRYWVSHVHDTHYIMGSVLGPHPFPQIVRDFQSVIGKETKKQYEALEGKLPEAVVACIGGGSNAMGMFYPFVHDEEVALYGVEAAGKGVHTEKHAATLTKGSVGVLHGSMMYLLQNEEGQIQEAHSISAGLDYPGVGPEHSLLKDIGRVSYHSITDDEALEAFQLLTKKEGIIPALESSHAVAYALKLAPKMKEDEGLVICLSGRGDKDVESIKRY 393          
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_PSESM (Tryptophan synthase beta chain OS=Pseudomonas syringae pv. tomato GN=trpB PE=3 SV=1)

HSP 1 Score: 256.144 bits (653), Expect = 1.674e-67
Identity = 122/226 (53.98%), Postives = 162/226 (71.68%), Query Frame = -1
Query:  135 GCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNY 812
            G  K+A +EA+R+WV N++ ++YL GTV GPHP P MVR+FQS+IGKET++Q  EK G  PD L+ACVG GSNA+GLFH F++D  V +IGVEA G G+D+ KHAA+L  G  GV HG  +YLLQD +GQI   HS+  GL+YPG+GPE ++L +  R E+ + TD+EA+ A+ + C LEGI PALE +HALA   K    L +   +VV  SG GDKD+ TV+N+
Sbjct:  172 GTLKDAMNEALRDWVTNVDDTFYLIGTVAGPHPYPAMVRDFQSVIGKETKEQMQEKEGRLPDSLIACVGGGSNAMGLFHPFLDDASVEIIGVEAGGHGVDTDKHAASLNGGVPGVLHGNRTYLLQDNDGQITDAHSISAGLDYPGIGPEHAYLHEVKRVEYVSITDEEALDAFHQCCLLEGIIPALETAHALAEAMKRATNLRDDHLMVVCLSGRGDKDMQTVMNH 397          
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_LISMO (Tryptophan synthase beta chain OS=Listeria monocytogenes GN=trpB PE=3 SV=1)

HSP 1 Score: 256.144 bits (653), Expect = 1.674e-67
Identity = 121/218 (55.50%), Postives = 165/218 (75.69%), Query Frame = -1
Query:  150 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVD 803
            K+A +EA+R WV N+E ++Y+ G+V+GPHP P +VR++QS+IG E RKQ +EK G  PD ++ACVG GSNA+GLF+ F++D  V++ GVEAAG GL++  HAAT++KGE+G+ HGAM  +LQDE GQIL   S+  GL+YPG+GPE SF RD GRA +++ TD EAV+A+Q LCR EGI PALE+SHA+++  KL   +     +VV  SG GDKDV+
Sbjct:  171 KDAVNEALRFWVANVEDTHYIMGSVLGPHPFPEIVRDYQSVIGIEARKQHLEKEGKLPDAIVACVGGGSNAMGLFYPFVDDASVQMHGVEAAGHGLETEFHAATISKGEIGILHGAMMDVLQDENGQILEAFSISAGLDYPGIGPEHSFFRDLGRAAYHSVTDDEAVEAFQLLCRTEGIIPALESSHAISYAVKLASKMRPEESMVVCLSGRGDKDVN 388          
The following BLAST results are available for this feature:
BLAST of CX043276 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 441
Match NameE-valueIdentityDescription
TRPB_LISIN3.373e-6855.50Tryptophan synthase beta chain OS=Listeria innocua... [more]
TRPB_RUTMC4.405e-6854.50Tryptophan synthase beta chain OS=Ruthia magnifica... [more]
TRPB_PHEZH5.753e-6854.71Tryptophan synthase beta chain OS=Phenylobacterium... [more]
TRPB_BACWK7.514e-6852.84Tryptophan synthase beta chain OS=Bacillus weihens... [more]
TRPB_BACC39.814e-6852.84Tryptophan synthase beta chain OS=Bacillus cereus ... [more]
TRPB_BACAH9.814e-6852.84Tryptophan synthase beta chain OS=Bacillus thuring... [more]
TRPB_METJA1.282e-6756.36Tryptophan synthase beta chain OS=Methanocaldococc... [more]
TRPB_BACCZ1.282e-6752.84Tryptophan synthase beta chain OS=Bacillus cereus ... [more]
TRPB_PSESM1.674e-6753.98Tryptophan synthase beta chain OS=Pseudomonas syri... [more]
TRPB_LISMO1.674e-6755.50Tryptophan synthase beta chain OS=Listeria monocyt... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS07_10A07_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-10A07-B14-1-7.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043276 ID=CX043276; Name=CX043276; organism=Citrus sinensis; type=EST; length=821bp
TTTTTTGAGAAAAATAGGTCTTAAATTAATAGATTTCTCGGGTTGCTGCT
AAATTGACGGGAACCCTTAAATATTGTGGTCACCACTTCTTCGATCCATT
ACAATTTCTACGTCGATAATTATTGATTGTATCTGTAATTGACGACCGTG
TCGACGTCCTTATCCCCACCTCCACTACAGTTGACAACAACTTTTGCACC
ATTAGGTAAAGTAGGGCAAAGTTTCTCTAGAAATGCTAATGCATGAGATG
CCTCAAGGGCCGGAAATATGCCTTCTAATCTGCACAGCCGTTGATATGCT
TGGACAGCTTCTTGGTCAGTCGCAGTGTAGAACTCCGCACGCCCAGTGTC
CCTAAGAAAGCTTATCTCCGGGCCAACTCCTGGATACTCTAGCCCTACAC
CGACAGAATGAGTCCCCAAGATTTGGCCTTCTTCATCTTGCAACAAGTAG
CTCATGGCTCCATGATAAACACCCACTTCCCCTTTAGCCAGAGTTGCAGC
GTGTTTGCCGCTGTCCAAGCCAAATCCAGCAGCCTCCACTCCAATCAATC
TCACATCTTCATCATTTATGAATTCATGAAACAAACCCAACGCATTTGAT
CCACTGCCCACACAAGCCAGCAATACATCAGGCTTGCCTCCCCATTTTTC
CATTGCTTGTTTTCTCGTTTCTTTGCCTATGATTGATTGAAATTCTCGTA
CCATTATTGGACACGGGTGAGGCCCCACCACCGTACCCGTTAAATAATAG
CTTTTTTCTAAGTTCCCCACCCAATTTCTGATAGCTTCTGAGCTTGCTTC
TTTGAAACATCCATCCACTGC
back to top