CX043273

Overview
NameCX043273
Unique NameCX043273
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length842
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig259 contig Csv1_Contig259:325..1166. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043273 vs. ExPASy Swiss-Prot
Match: EIF3F_CULQU (Eukaryotic translation initiation factor 3 subunit F OS=Culex quinquefasciatus GN=eIF3-S5 PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.767e-25
Identity = 68/200 (34.00%), Postives = 101/200 (50.50%), Query Frame = -1
Query:  237 KVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNPVHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQFQEIPLDLRMIEAERVGFDI-LKSTSVDKLPS---------DLEGMEVLMERLLTLINDIYKYVDDTVEGHAVPDNSVGRILSETVASLPKLSPPAFDKLVNXXXXXXXXXXXXXSITRTQLSLAEKLNT 806
            +VNP E IVGW++TG  VT  S++IHE+Y RE  NP+HLT+DT        +KAYV V+L +   +    F  I +++   E E VG  +  K+  V   P+         DL  +     +L TL+ ++  YV+D +     PDN VGR L + + S+P +    F K+ N              + +TQL L EKL +
Sbjct:   82 RVNPSENIVGWWATGQEVTNHSSVIHEYYARECNNPIHLTLDTSLTAARMGIKAYVCVSLGVPGGKTGCMFTPINVEVTSYEPEVVGLSLCAKTIGVQSNPARPRTVSPMLDLAQVSEASGKLQTLLGEVLNYVEDVLAEKQQPDNFVGRALLDLIHSVPNMKHEEFAKMFNSNVKDLLMVVTLSQLIKTQLQLNEKLTS 281          
BLAST of CX043273 vs. ExPASy Swiss-Prot
Match: EIF3F_ASPCL (Eukaryotic translation initiation factor 3 subunit F OS=Aspergillus clavatus GN=ACLA_026150 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.535e-20
Identity = 67/215 (31.16%), Postives = 110/215 (51.16%), Query Frame = -1
Query:  234 IEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCRE----VPNP-VHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLA--AQFQEIPLDLRMIEAERVGFDILKS-----TSVDKLPSDLEGMEVLMERLLTLINDIYKYVDDTVEGHAVPDNSVGRILSETVASLPKLSPPAFDKLVNXXXXXXXXXXXXXSITRTQLSLAEKLNTA 842
            +EY   ML  HLK NP+EV+VGW++T   +   SALI  FY  +     P+P VHLTV T       T +AY+S  + +   + A  A F  +P ++R  EAE+ G + + S          + +D+E +E  +E +L +I+ + +YV+  ++  A    ++G+ L  T+A  PK+ P   ++  N             +  RTQ+ L+ +L TA
Sbjct:   90 MEYQKQMLALHLKANPKEVLVGWYATSSELNTFSALIQNFYSGQGDGTWPHPAVHLTVSTEAGKDIET-RAYISAPVGVTAERAADSAAFIPVPYEIRYGEAEKSGLEAISSARDAENRATNIFTDIEALERAIEDVLGMIDRVSRYVESVIDEEAPASTALGQFLLNTLALAPKVEPADIERDFNNHIQDVLVVSYLANTIRTQMELSNRLATA 303          
BLAST of CX043273 vs. ExPASy Swiss-Prot
Match: EIF3F_NEOFI (Eukaryotic translation initiation factor 3 subunit F OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=NFIA_016300 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.343e-19
Identity = 65/215 (30.23%), Postives = 110/215 (51.16%), Query Frame = -1
Query:  234 IEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCRE----VPNP-VHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLA--AQFQEIPLDLRMIEAERVGFDILKS-----TSVDKLPSDLEGMEVLMERLLTLINDIYKYVDDTVEGHAVPDNSVGRILSETVASLPKLSPPAFDKLVNXXXXXXXXXXXXXSITRTQLSLAEKLNTA 842
            +EY   ML  HLK NP+EV+VGW++T   +   SALI  FY  +     P+P VHLTV T     +   +AY+S  + +   + A  A F  +P ++R  EAE+ G + + S     +    + +D+E +E  +E +L +I+ + +YV+  ++  A    ++G+ L   +A  PK+ P   ++  N             +  RTQ+ L+ +L TA
Sbjct:   90 MEYQKQMLALHLKANPKEVLVGWYATSSELNTFSALIQNFYSGQGDGTWPHPAVHLTVSTE-PGKDIETRAYISAPVGVTAERAADSAAFIPVPYEIRYGEAEKSGLETIASAKDAESRATNIFTDIEALERAIEEVLGMIDRVSRYVESVIDEEAPASTALGQFLLNALALAPKVEPADIERDFNNHIQDVLVVSYLANTIRTQMELSNRLATA 303          
BLAST of CX043273 vs. ExPASy Swiss-Prot
Match: EIF3F_ASPFU (Eukaryotic translation initiation factor 3 subunit F OS=Aspergillus fumigatus GN=AFUA_1G09330 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.343e-19
Identity = 65/215 (30.23%), Postives = 110/215 (51.16%), Query Frame = -1
Query:  234 IEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCRE----VPNP-VHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLA--AQFQEIPLDLRMIEAERVGFDILKS-----TSVDKLPSDLEGMEVLMERLLTLINDIYKYVDDTVEGHAVPDNSVGRILSETVASLPKLSPPAFDKLVNXXXXXXXXXXXXXSITRTQLSLAEKLNTA 842
            +EY   ML  HLK NP+EV+VGW++T   +   SALI  FY  +     P+P VHLTV T     +   +AY+S  + +   + A  A F  +P ++R  EAE+ G + + S     +    + +D+E +E  +E +L +I+ + +YV+  ++  A    ++G+ L   +A  PK+ P   ++  N             +  RTQ+ L+ +L TA
Sbjct:   90 MEYQKQMLALHLKANPKEVLVGWYATSSELNTFSALIQNFYSGQGDGTWPHPAVHLTVSTE-PGKDIETRAYISAPVGVTAERAADSAAFIPVPYEIRYGEAEKSGLEAIASAKDAESRATNIFTDIEALERAIEEVLGMIDRVSRYVESVIDEEAPASTALGQFLLNALALAPKVEPADIERDFNNHIQDVLVVSYLANTIRTQMELSNRLATA 303          
BLAST of CX043273 vs. ExPASy Swiss-Prot
Match: EIF3F_ASPFC (Eukaryotic translation initiation factor 3 subunit F OS=Aspergillus fumigatus (strain CEA10 / CBS 144.89 / FGSC A1163) GN=AFUB_008750 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.343e-19
Identity = 65/215 (30.23%), Postives = 110/215 (51.16%), Query Frame = -1
Query:  234 IEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCRE----VPNP-VHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLA--AQFQEIPLDLRMIEAERVGFDILKS-----TSVDKLPSDLEGMEVLMERLLTLINDIYKYVDDTVEGHAVPDNSVGRILSETVASLPKLSPPAFDKLVNXXXXXXXXXXXXXSITRTQLSLAEKLNTA 842
            +EY   ML  HLK NP+EV+VGW++T   +   SALI  FY  +     P+P VHLTV T     +   +AY+S  + +   + A  A F  +P ++R  EAE+ G + + S     +    + +D+E +E  +E +L +I+ + +YV+  ++  A    ++G+ L   +A  PK+ P   ++  N             +  RTQ+ L+ +L TA
Sbjct:   90 MEYQKQMLALHLKANPKEVLVGWYATSSELNTFSALIQNFYSGQGDGTWPHPAVHLTVSTE-PGKDIETRAYISAPVGVTAERAADSAAFIPVPYEIRYGEAEKSGLEAIASAKDAESRATNIFTDIEALERAIEEVLGMIDRVSRYVESVIDEEAPASTALGQFLLNALALAPKVEPADIERDFNNHIQDVLVVSYLANTIRTQMELSNRLATA 303          
BLAST of CX043273 vs. ExPASy Swiss-Prot
Match: EIF3F_ASPOR (Eukaryotic translation initiation factor 3 subunit F OS=Aspergillus oryzae GN=AO090005001590 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.993e-19
Identity = 64/215 (29.77%), Postives = 109/215 (50.70%), Query Frame = -1
Query:  234 IEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCRE----VPNP-VHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLA--AQFQEIPLDLRMIEAERVGFDILKS-----TSVDKLPSDLEGMEVLMERLLTLINDIYKYVDDTVEGHAVPDNSVGRILSETVASLPKLSPPAFDKLVNXXXXXXXXXXXXXSITRTQLSLAEKLNTA 842
            +EY   ML  HLK NP+EV+VGW++T   +   SALI  FY  +     P+P VHLTV T     +   +AY+S  + +   + A  A F  +P ++R  E E+ G + + +     +    + +D+E +E  +E +L +I+ + KYV+  ++  A    ++G+ L   +A  PK+ P   ++  N             +  RTQ+ L+ +L TA
Sbjct:   90 MEYQKQMLALHLKANPKEVLVGWYATSSELNTFSALIQNFYSGQGDGTFPHPAVHLTVSTE-PGKDVETRAYISAPVGVTAERAADSAAFIPVPYEIRYGETEKSGLESIAAARDVESRAANIFTDIEALERAVEEVLGMIDRVSKYVESVIDEEAPASTALGQFLLNALALAPKVEPADIERDFNNHIQDVLVVSYLANTIRTQMELSNRLATA 303          
BLAST of CX043273 vs. ExPASy Swiss-Prot
Match: EIF3F_ASPNC (Eukaryotic translation initiation factor 3 subunit F OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=An08g00880 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.909e-19
Identity = 66/215 (30.70%), Postives = 111/215 (51.63%), Query Frame = -1
Query:  234 IEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCRE----VPNP-VHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLA--AQFQEIPLDLRMIEAERVGFDILKSTSVDK-----LPSDLEGMEVLMERLLTLINDIYKYVDDTVEGHAVPDNSVGRILSETVASLPKLSPPAFDKLVNXXXXXXXXXXXXXSITRTQLSLAEKLNTA 842
            +EY   ML  HLK NP+EV+VGW++T   +   SALI  FY  +     P+P VHLTV T       T +AY+S  + +   + A  A F  +P ++R  EAE+ G + + +    +     + +D+E +E  +E +L +I+ + +YV+  ++  A    ++G+ L  T+A  PK+ P   ++  N             +  RTQ+ L+ +L TA
Sbjct:   90 MEYQKQMLALHLKANPKEVLVGWYATSSELNTFSALIQNFYSGQGDGTWPHPAVHLTVSTEAGKDIET-RAYISAPVGVTAERAADSAAFIPVPYEIRYGEAEKSGLEAIGAARDAEERRANIFTDIEALERAIEDVLGMIDRVSRYVESVIDEEAPASTALGQYLLNTLALAPKVEPADIERDFNNHIQDVLVVSYLANTIRTQMELSNRLATA 303          
BLAST of CX043273 vs. ExPASy Swiss-Prot
Match: EIF3F_COCIM (Eukaryotic translation initiation factor 3 subunit F OS=Coccidioides immitis GN=CIMG_07134 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.105e-19
Identity = 66/215 (30.70%), Postives = 106/215 (49.30%), Query Frame = -1
Query:  234 IEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCRE----VPNP-VHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLA--AQFQEIPLDLRMIEAERVGFDILKST-----SVDKLPSDLEGMEVLMERLLTLINDIYKYVDDTVEGHAVPDNSVGRILSETVASLPKLSPPAFDKLVNXXXXXXXXXXXXXSITRTQLSLAEKLNTA 842
            +EY   ML  HLK NP+EV+VGW++T   +   SALI  FY  +     P+P VHLTV T     +   + Y+S  + +   + A  A F  +P ++R  EAER G + +            L +D+E +E  +E +L +I+ + KYV+  ++  A    ++G+ L   +A  PK+ P   +   N             +  RTQ+ L+ +L TA
Sbjct:   90 MEYQKQMLALHLKANPKEVLVGWYATSSELNTFSALIQNFYGGQGDGTWPHPAVHLTVSTE-PGKDIETRTYISAPVGVTAERAADSAAFIPVPYEIRYSEAERNGLEAIAQARDAEDRASSLFTDIETLEKSIEEVLGMIDRVSKYVESVIDEEAPASTALGQFLLNALALAPKVDPADIESDFNKHIQDVLVVSYLANTIRTQMELSNRLATA 303          
BLAST of CX043273 vs. ExPASy Swiss-Prot
Match: EIF3F_ASPTN (Eukaryotic translation initiation factor 3 subunit F OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=ATEG_08559 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 8.707e-19
Identity = 64/215 (29.77%), Postives = 108/215 (50.23%), Query Frame = -1
Query:  234 IEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCRE----VPNP-VHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLA--AQFQEIPLDLRMIEAERVGFDILKST-----SVDKLPSDLEGMEVLMERLLTLINDIYKYVDDTVEGHAVPDNSVGRILSETVASLPKLSPPAFDKLVNXXXXXXXXXXXXXSITRTQLSLAEKLNTA 842
            +EY   ML  HLK NP+EV+VGW++T   +   SALI  FY  +     P+P VHLTV T     +   +AY+S  + +   + A  A F  +P ++R  E E+ G + + +          L +D+E +E  +E +L +I+ + +YV+  ++  A    ++G+ L   +A  PK+ P   ++  N             +  RTQ+ L+ +L TA
Sbjct:   90 MEYQKQMLALHLKANPKEVLVGWYATSSELNTFSALIQNFYSGQGDGTFPHPAVHLTVSTE-PGKDIETRAYISAPVGVTAERAADSAAFIPVPHEIRYGETEKSGLEAIAAARDAEERAANLFTDIEALERAIEEVLGMIDRVSRYVESVIDEEAPASTALGQFLLNALALAPKVEPADIERDFNNHIQDVLVVSYLANTIRTQMELSNRLATA 303          
BLAST of CX043273 vs. ExPASy Swiss-Prot
Match: EIF3F_PHANO (Eukaryotic translation initiation factor 3 subunit F OS=Phaeosphaeria nodorum GN=SNOG_04858 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.485e-18
Identity = 59/216 (27.31%), Postives = 112/216 (51.85%), Query Frame = -1
Query:  231 IEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCRE----VPNP-VHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLA--AQFQEIPLDLRMIEAERVGFDILKSTS-----VDKLPSDLEGMEVLMERLLTLINDIYKYVDDTVEGHAVPDNSVGRILSETVASLPKLSPPAFDKLVNXXXXXXXXXXXXXSITRTQLSLAEKLNTAA 842
            ++Y   ML  HL+ NP+EV+VGW++T   +   SALI  FY ++     P+P VHLTV T     +   + Y+S  + +   + A    F  +P +++  EAE+ G +++ S         ++ +DL+ +E  ++ +L ++  +  YV++ ++  A P +++G+ L   ++  PK+ P   ++  N             +  RTQ+ L+ +L TAA
Sbjct:   90 MDYQKQMLALHLRANPREVLVGWYATSSDLNTFSALIQNFYSQQGDGTWPHPAVHLTVST-VPGQDIESRTYISAPIGVTAERAADSCLFIPVPHEIKYGEAEKSGLELISSAKDREDRSQEIMTDLDSLERAVQHVLDMLERVSNYVNNVLDEEAEPSSALGQFLMNALSLAPKVDPADIERDFNNHIQDVLVVSYLANTIRTQIDLSNRLATAA 304          
The following BLAST results are available for this feature:
BLAST of CX043273 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
EIF3F_CULQU4.767e-2534.00Eukaryotic translation initiation factor 3 subunit... [more]
EIF3F_ASPCL3.535e-2031.16Eukaryotic translation initiation factor 3 subunit... [more]
EIF3F_NEOFI1.343e-1930.23Eukaryotic translation initiation factor 3 subunit... [more]
EIF3F_ASPFU1.343e-1930.23Eukaryotic translation initiation factor 3 subunit... [more]
EIF3F_ASPFC1.343e-1930.23Eukaryotic translation initiation factor 3 subunit... [more]
EIF3F_ASPOR2.993e-1929.77Eukaryotic translation initiation factor 3 subunit... [more]
EIF3F_ASPNC3.909e-1930.70Eukaryotic translation initiation factor 3 subunit... [more]
EIF3F_COCIM5.105e-1930.70Eukaryotic translation initiation factor 3 subunit... [more]
EIF3F_ASPTN8.707e-1929.77Eukaryotic translation initiation factor 3 subunit... [more]
EIF3F_PHANO1.485e-1827.31Eukaryotic translation initiation factor 3 subunit... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_10A05_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-10A05-B10-1-7.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043273 ID=CX043273; Name=CX043273; organism=Citrus sinensis; type=EST; length=842bp
AAAAAATTAATGCTAAATCTGACCAAAATGGATATTTGTTTCTCAATAGA
ACCCAAACCATTACAAAGCAATCTTGTTAAAATTGTGCAACTAATTTAAA
CTCTAGCTCATAAAATACAGCCTTTCCAGAAAGTAAATACGCACATTCCT
CAGAGTTTGTGATATATTAATTCAAACTCAAATCGCCTTAGCACATGAAT
TCATATGTCAGCGAGAAATTATGGCATCTGAGCAGCGGTGTTCAACTTTT
CTGCTAAGCTGAGCTGGGTCCTGGTGATACTTGACAAATATAGCAAGAGC
AACTGGTCCTGTAGGCTGTCATTTACAAGCTTGTCAAAAGCTGGAGGTGA
CAGTTTGGGAAGGGAGGCTACAGTCTCTGAAAGAATACGCCCTACACTAT
TATCAGGTACAGCATGCCCTTCCACAGTGTCATCAACATATTTGTAGATA
TCGTTAATAAGAGTTAGTAGCCGTTCCATCAGGACTTCCATTCCTTCCAA
ATCACTAGGGAGTTTGTCAACCGATGTTGACTTCAGAATATCGAATCCAA
CTCGCTCAGCTTCAATCATTCGAAGATCAAGAGGGATTTCTTGAAATTGT
GCAGCAAGCTGTCGATCTCCAAGAGACAAATTGACAGAAACATAAGCTTT
TACAGTACCCTCTCCATTTCTGAATCCTGTATCTACAGTCAGGTGGACAG
GATTAGGAACTTCGCGACAATAGAATTCATGGATCAAGGCACTGCCACCA
GTGACTCCCAACCCTGTAGAAAACCATCCAACAATCACTTCCTGAGGATT
CACCTTTAGGTGTGACTTTAACATGGTATGATGGTATTCAAT
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