CX043273

Overview
NameCX043273
Unique NameCX043273
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length842
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig259 contig Csv1_Contig259:325..1166. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043273 vs. ExPASy Swiss-Prot
Match: EI3F2_DROAN (Eukaryotic translation initiation factor 3 subunit F-2 OS=Drosophila ananassae GN=eIF3-S5-2 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 9.627e-18
Identity = 57/208 (27.40%), Postives = 101/208 (48.56%), Query Frame = -1
Query:  243 YHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPN--PVHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQFQEIPLDLRMIEAERVGFDILKSTSVDK--------LPSDLEGMEVLMERLLTLINDIYKYVDDTVEGHAVPDNSVGRILSETVASLPKLSPPAFDKLVNXXXXXXXXXXXXXSITRTQLSLAEKL 836
            Y + ML+ +    PQE ++GWFSTG  V+  + L+H++Y RE  +  P+HL VD   +    + + Y  V + +        F  +PL++    AE V   +++  ++          LP  ++ +E   E  L L + + +Y++D +     PDN VGR L +T+ S+P +    F  + N             ++ +TQL ++EKL
Sbjct:   73 YANDMLELNQLTYPQEKVLGWFSTGKSVSRSALLLHDYYSRECSDGQPLHLLVDATLKGQRLSTRLYCGVEMGVPGGTKGLMFSLVPLEMASDSAEMVALRLMQKQNLQPGAKQVGRILPELVQVVEATRELQLRL-DLVLRYINDVLARKRRPDNVVGRALHDTLTSVPLVDTDNFKLMFNANVRDMLMAITLSTMIKTQLQISEKL 279          
BLAST of CX043273 vs. ExPASy Swiss-Prot
Match: EIF3F_BOMMO (Eukaryotic translation initiation factor 3 subunit F OS=Bombyx mori GN=eIF3-S5 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.257e-17
Identity = 63/208 (30.29%), Postives = 92/208 (44.23%), Query Frame = -1
Query:  243 IEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNPVHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQFQEIPLDLRMIEAERVGFDILKST--------SVDKLPSDLEGMEVLMERLLTLINDIYKYVDDTVEGHAVPDNSVGRILSETVASLPKLSPPAFDKLVNXXXXXXXXXXXXXSITRTQLSLAEKL 842
            + Y   + + + +VN  E IVGW++TG  VT  S++IHE+Y RE   PVH+T+DT    G   ++AYV V L + + +    F  + + L   E E VG  + + T        S     SDL  +      L +L+    +Y D    G A  D   GR L +   S P L+   F                   + +TQL L EKL
Sbjct:   65 LNYAMDVYELNRRVNSSESIVGWWATGNEVTNHSSVIHEYYSRECREPVHVTLDTSLAGGRMGLRAYVCVPLGVPNGKQGCMFTPVDVTLTCYEPEIVGLQVCQKTVSGGGRGSSGVAAGSDLAQVMSAASSLESLLEQALQYADGAAAG-APADAEAGRALLQLAHSAPDLAKDTFSDAFASSVKDLLMVVTLAQLIKTQLQLNEKL 271          
BLAST of CX043273 vs. ExPASy Swiss-Prot
Match: EI3F2_DROWI (Eukaryotic translation initiation factor 3 subunit F-2 OS=Drosophila willistoni GN=eIF3-S5-2 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.658e-17
Identity = 50/208 (24.04%), Postives = 104/208 (50.00%), Query Frame = -1
Query:  243 IEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVP--NPVHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQFQEIPLDLRMIEAERVGFDILKSTS------VDKLPSDLEGMEVLMERLLTLINDIYKYVDDTVEGHAVPDNSVGRILSETVASLPKLSPPAFDKLVNXXXXXXXXXXXXXSITRTQLSLAEKL 842
            ++Y + M + +    PQE I+GW++TG  V+  +  +HE+Y RE    NP+HL +DT  R     ++ Y +V + + +      F  +P+++     E V  +++K  +      V ++  +L  +  +   L T ++ + +YV++T+     P+N+VGR L + + S+P +   +F  + N             ++ + QL ++E +
Sbjct:   73 LQYANDMYELNQLTYPQEKIIGWYATGKEVSRSAVNLHEYYARECADGNPMHLLIDTSLRGQRMMMRLYTAVVMGVPNGTKGLMFSLLPVEMSSGNPESVALNLMKKNALQPTKQVGRILPELVQVVDITRDLQTKLDLVLRYVNETLARKRTPNNTVGRALHDALTSVPLVDAESFRMMFNANVRDMLMSITLATMIKAQLKISESV 280          
BLAST of CX043273 vs. ExPASy Swiss-Prot
Match: EIF3F_USTMA (Eukaryotic translation initiation factor 3 subunit F OS=Ustilago maydis GN=UM00175 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.778e-17
Identity = 58/206 (28.16%), Postives = 100/206 (48.54%), Query Frame = -1
Query:  243 IEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVP--NPVHLTVDT---GFRNGEGTVKAYVSVNLSLGDRQLAAQFQEIPLDLRMIEAERVGFDILKSTSVDKLPSDLEGMEVLMERLLTLINDIYKYVDDTVEGHAVPDNSVGRILSETVASLPK-LSPPAFDKLVNXXXXXXXXXXXXXSITRTQLSLAEKL 842
            +EYH +M +   KV P EVIVGW++T   +   SALI +FY RE      VHLT+DT   G +     +K+Y+S  L    +     F  +P +L     E     +L S ++    +DL+ + V ++++ + ++ +  YV   + G    D +VGR L++T++ +P  L     + L N             ++ R Q  ++ +L
Sbjct:   92 MEYHRSMYELCQKVRPDEVIVGWYATSPELNTYSALIQDFYSRETAPHQAVHLTMDTTIDGSKPSGLGIKSYISSPLGATPKAENCVFLPLPTNLLHSTPEHSSLSLLASQNISSPLTDLDALAVSLKQVQSQLDRVLTYVRAVISGEKEGDKAVGRFLNDTISVVPAGLDDNKLETLFNAHLQDVLMVSYLANVVRAQAEVSSRL 297          
BLAST of CX043273 vs. ExPASy Swiss-Prot
Match: EIF3F_SCHPO (Eukaryotic translation initiation factor 3 subunit F OS=Schizosaccharomyces pombe GN=eif3f PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.371e-16
Identity = 63/218 (28.90%), Postives = 103/218 (47.25%), Query Frame = -1
Query:  240 IEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREV----------PNP-VHLTVDTGFRNGEGTVKAYVSVNLSLGDRQL-AAQFQEIPLDLRMIEAERVGFDILKSTSVD-----KLPSDLEGMEVLMERLLTLINDIYKYVDDTVEGHAVPDNSVGRILSETVASLPKLSPPAFDKLVNXXXXXXXXXXXXXSITRTQLSLAEKLN 842
            +EYH  M   HLK NP+EV+VGW++T   +   SALI   Y              P+P VHLTV+T   +    +K YVS  + + +R   +  F   P  +R  EA R G   + +   D      L +DL+ +      LL++I  +  YV + ++G +  + +VGR L +  + +P +    F+K+ +             +  RTQ+ +A +LN
Sbjct:   83 MEYHRAMYHLHLKANPREVVVGWYATSPDLDAFSALIQNLYASPAEPGTAPLGTYPHPCVHLTVNTDV-SSPLAIKTYVSSPVGITERLADSCAFVPTPFTIRDDEAVRSGLKAVAAPKNDPSRLASLFTDLQQLRRSTLELLSMIERVSDYVQNVIDGSSPANVAVGRYLMKCFSLIPCVEGQDFEKIFSSHLQDVLVVVYLANTLRTQVDIASRLN 299          
BLAST of CX043273 vs. ExPASy Swiss-Prot
Match: EIF3F_MALGO (Eukaryotic translation initiation factor 3 subunit F OS=Malassezia globosa (strain ATCC 96807 / CBS 7966) GN=MGL_1945 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.899e-16
Identity = 58/172 (33.72%), Postives = 85/172 (49.42%), Query Frame = -1
Query:  357 EYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVP--NPVHLTVDTGF---RNGEGTVKAYVSVNLSLGDRQLAAQFQEIPLDLRMIEAERVGFDILKS------TSVDKLPSDLEGMEVLMERLLTLINDIYKYVDDTVEGHAVPDNSVGRILSETVASLP 839
            E+H  ML  HL+V P EV++GW+ST   +   SALI + Y RE      +HLT++T      NG G V+ YVS  L    +     F  +P  L M   E+     L +      T +D L + LE ++  ++R+LT       YV   + G    D +VGR LS+T+  +P
Sbjct:   94 EHHRRMLDLHLRVRPDEVVLGWYSTNTELNSNSALIQDHYSRETAPHQAIHLTLNTNVADEANGLG-VQCYVSALLGAMAKPEDCAFLSLPTHLLMSTPEQTALRHLAAPKPQNITDLDALKASLEDVQAKLDRVLT-------YVRRVLAGEVEGDKAVGRYLSDTIGVVP 257          
BLAST of CX043273 vs. ExPASy Swiss-Prot
Match: EI3F2_DROVI (Eukaryotic translation initiation factor 3 subunit F-2 OS=Drosophila virilis GN=eIF3-S5-2 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.899e-16
Identity = 58/210 (27.62%), Postives = 99/210 (47.14%), Query Frame = -1
Query:  240 EYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPN--PVHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQFQEIPL-DLRMIEAERVGFDILKSTSVDK-------LPSDLEGMEVLMERLLTLINDIYKYVDDTVEGHAVPDNSVGRILSETVASLPKLSPPAFDKLVNXXXXXXXXXXXXXSITRTQLSLAEKLN 839
            +Y   M + +    PQE I+GW+STG  ++  +A +H +Y RE  +  P+HL VDT  R G  + + Y  V + +        F  +PL  L     E V   +++  ++         LP  +  ME   E L   +  + +Y++D +     PDNS+GR L + + S+P L   +F  + N             ++ +TQ+ L+EKL+
Sbjct:   77 QYASEMFELNQITYPQEKIIGWYSTGKSLSRSAAALHAYYSRECGDVQPLHLLVDTTLRGGHLSTRLYCGVTMGVPGGTRGLLFTLLPLLKLNTDGDESVALRLMQKQALHPTKQLGRMLPELVHVMEATRE-LEQKLELVMRYINDVLARKRRPDNSIGRALHDALTSVPLLDAESFRLMFNANVRNMLMSITLSTMIKTQMELSEKLS 285          
BLAST of CX043273 vs. ExPASy Swiss-Prot
Match: EI3F2_DROMO (Eukaryotic translation initiation factor 3 subunit F-2 OS=Drosophila mojavensis GN=eIF3-S5-2 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.899e-16
Identity = 59/210 (28.10%), Postives = 100/210 (47.62%), Query Frame = -1
Query:  240 EYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPN--PVHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQFQEIPLDLRMIEA-ERVGFDILKSTSVDK-------LPSDLEGMEVLMERLLTLINDIYKYVDDTVEGHAVPDNSVGRILSETVASLPKLSPPAFDKLVNXXXXXXXXXXXXXSITRTQLSLAEKLN 839
            +Y   M + +    PQE I+GW+ TG  ++  +A +H +Y RE  +  P+HL VDT  R G  T + Y +V + +        F  +PL     E  E V   +++  ++         LP  +  ME   E L   ++ + +Y++D +     PDNS+GR L + + S+P L   +F  + N             S+ +TQ+ L+EKL+
Sbjct:   77 QYASEMFELNQVTYPQEKIIGWYCTGKTLSRSAAALHGYYSRECGDMQPLHLLVDTSLRGGRLTTRLYCAVTMGVPGGTRGLLFTLLPLLKVNAEGDEAVALRLMQKQALHPTKQLGRMLPELVHVMEATRE-LEQKLDLVMRYINDVLTRKRRPDNSIGRALHDALTSVPLLDADSFRAMFNANVRNMLMSITLSSMIKTQMELSEKLS 285          
BLAST of CX043273 vs. ExPASy Swiss-Prot
Match: EI3F2_DROER (Eukaryotic translation initiation factor 3 subunit F-2 OS=Drosophila erecta GN=eIF3-S5-2 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.177e-15
Identity = 50/210 (23.81%), Postives = 99/210 (47.14%), Query Frame = -1
Query:  240 IEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREV--PNPVHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQFQEIPLDLRMIEAERVGFDILKSTSVDKLPSDLEGMEVLMERLLTLINDI-------YKYVDDTVEGHAVPDNSVGRILSETVASLPKLSPPAFDKLVNXXXXXXXXXXXXXSITRTQLSLAEKLN 842
            I Y   +L+ ++   P E ++GWF TG  V+  ++L+H++Y RE     P+HL VD   ++   + + Y +V + +        F  +PL++    ++ V    ++  S+ +    L+     + +++    DI        +Y+ D ++    PDN VGR L   + ++P + P  F  + N             ++ +TQL ++EKL+
Sbjct:   71 IAYASEILELNMLTYPNERVLGWFCTGKSVSRSASLLHDYYARECGEVQPLHLVVDATLKSQRLSTRLYCAVEIGVPGGTKGLMFSLVPLEISNGNSDLVALRSIEKQSLQQGTKQLDRFIPELVQVVDATRDIQQRLDLVLRYIKDVLDRKRKPDNVVGRALHAALTAVPVMDPDKFRLMFNTNLRDMLMAITLSTMIKTQLEISEKLS 280          
BLAST of CX043273 vs. ExPASy Swiss-Prot
Match: EI3F2_DROSI (Eukaryotic translation initiation factor 3 subunit F-2 OS=Drosophila simulans GN=eIF3-S5-2 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.537e-15
Identity = 50/208 (24.04%), Postives = 96/208 (46.15%), Query Frame = -1
Query:  240 YHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREV--PNPVHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQFQEIPLDLRMIEAERVGFDILKSTSVDKLPSDLEGMEVLMERLLTLINDI-------YKYVDDTVEGHAVPDNSVGRILSETVASLPKLSPPAFDKLVNXXXXXXXXXXXXXSITRTQLSLAEKLN 836
            Y   +L+ ++   P E ++GWF TG  V+  ++LIH++Y RE     P+HL VD   +N   + + Y +V + +        F  +PL++    ++ +    ++  S  +    +E     + +++    DI        +Y++D +     PDN VGR L   + ++P L    F  + N             ++ +TQL ++EKL+
Sbjct:   73 YASEVLELNMFAYPNERVLGWFCTGKSVSRSASLIHDYYVRECGERQPLHLLVDASLKNQRLSTRLYCAVEMGVPGGTKGLMFSLVPLEISSENSDLLAMRCIEKQSQQQASKQMERFAPELVQVVDATRDIQQRLDLLLRYINDVLARKKKPDNVVGRSLQAALTAVPLLDSEKFRLMFNTNLRDMLMAITLSTMIKTQLEISEKLS 280          
The following BLAST results are available for this feature:
BLAST of CX043273 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
EI3F2_DROAN9.627e-1827.40Eukaryotic translation initiation factor 3 subunit... [more]
EIF3F_BOMMO1.257e-1730.29Eukaryotic translation initiation factor 3 subunit... [more]
EI3F2_DROWI3.658e-1724.04Eukaryotic translation initiation factor 3 subunit... [more]
EIF3F_USTMA4.778e-1728.16Eukaryotic translation initiation factor 3 subunit... [more]
EIF3F_SCHPO2.371e-1628.90Eukaryotic translation initiation factor 3 subunit... [more]
EIF3F_MALGO6.899e-1633.72Eukaryotic translation initiation factor 3 subunit... [more]
EI3F2_DROVI6.899e-1627.62Eukaryotic translation initiation factor 3 subunit... [more]
EI3F2_DROMO6.899e-1628.10Eukaryotic translation initiation factor 3 subunit... [more]
EI3F2_DROER1.177e-1523.81Eukaryotic translation initiation factor 3 subunit... [more]
EI3F2_DROSI1.537e-1524.04Eukaryotic translation initiation factor 3 subunit... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_10A05_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-10A05-B10-1-7.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043273 ID=CX043273; Name=CX043273; organism=Citrus sinensis; type=EST; length=842bp
AAAAAATTAATGCTAAATCTGACCAAAATGGATATTTGTTTCTCAATAGA
ACCCAAACCATTACAAAGCAATCTTGTTAAAATTGTGCAACTAATTTAAA
CTCTAGCTCATAAAATACAGCCTTTCCAGAAAGTAAATACGCACATTCCT
CAGAGTTTGTGATATATTAATTCAAACTCAAATCGCCTTAGCACATGAAT
TCATATGTCAGCGAGAAATTATGGCATCTGAGCAGCGGTGTTCAACTTTT
CTGCTAAGCTGAGCTGGGTCCTGGTGATACTTGACAAATATAGCAAGAGC
AACTGGTCCTGTAGGCTGTCATTTACAAGCTTGTCAAAAGCTGGAGGTGA
CAGTTTGGGAAGGGAGGCTACAGTCTCTGAAAGAATACGCCCTACACTAT
TATCAGGTACAGCATGCCCTTCCACAGTGTCATCAACATATTTGTAGATA
TCGTTAATAAGAGTTAGTAGCCGTTCCATCAGGACTTCCATTCCTTCCAA
ATCACTAGGGAGTTTGTCAACCGATGTTGACTTCAGAATATCGAATCCAA
CTCGCTCAGCTTCAATCATTCGAAGATCAAGAGGGATTTCTTGAAATTGT
GCAGCAAGCTGTCGATCTCCAAGAGACAAATTGACAGAAACATAAGCTTT
TACAGTACCCTCTCCATTTCTGAATCCTGTATCTACAGTCAGGTGGACAG
GATTAGGAACTTCGCGACAATAGAATTCATGGATCAAGGCACTGCCACCA
GTGACTCCCAACCCTGTAGAAAACCATCCAACAATCACTTCCTGAGGATT
CACCTTTAGGTGTGACTTTAACATGGTATGATGGTATTCAAT
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