CX043273

Overview
NameCX043273
Unique NameCX043273
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length842
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig259 contig Csv1_Contig259:325..1166. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX043273 vs. ExPASy Swiss-Prot
Match: EIF3F_CHAGB (Eukaryotic translation initiation factor 3 subunit F OS=Chaetomium globosum GN=CHGG_00662 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.543e-12
Identity = 57/215 (26.51%), Postives = 98/215 (45.58%), Query Frame = -1 
Query:  234 IEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCR----EVPNP-VHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQ--FQEIPLDLRMIEAERVGFDILKS---TSVDKLP--SDLEGMEVLMERLLTLINDIYKYVDDTVEGHAVPDNSVGRILSETVASLPKLSPPAFDKLVNXXXXXXXXXXXXXSITRTQLSLAEKLNTA 842
            +EY   ML   LK +P+E ++GW++T   +   SALI  F+        P+P VHLT+ T         KAY+S  +++   + A    F E+P  L   +AER       +   T     P  SD+E +   +E +  L+  +  +V + ++      +++G+ L   ++  PK+S    +   N             +  RTQ+ LA++L TA
Sbjct:   93 VEYQKNMLALTLKASPRETLLGWYTTSHELNSFSALIQNFFASPETGTFPHPAVHLTISTE-PGAPIATKAYISAPVAVSPERAAESCLFIEVPHKLLFSDAERAALGTATAAAETEARSAPVISDIETLAQSLESVSDLLERVSGFVGEVLDEERDGSHALGQYLMNALSLAPKVSATQIEADFNNHVQDVLMVSYLANTIRTQIDLAQRLATA 306
The following BLAST results are available for this feature:
BLAST of CX043273 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
EIF3F_CHAGB3.543e-1226.51Eukaryotic translation initiation factor 3 subunit... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_10A05_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-10A05-B10-1-7.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043273 ID=CX043273; Name=CX043273; organism=Citrus sinensis; type=EST; length=842bp
AAAAAATTAATGCTAAATCTGACCAAAATGGATATTTGTTTCTCAATAGA
ACCCAAACCATTACAAAGCAATCTTGTTAAAATTGTGCAACTAATTTAAA
CTCTAGCTCATAAAATACAGCCTTTCCAGAAAGTAAATACGCACATTCCT
CAGAGTTTGTGATATATTAATTCAAACTCAAATCGCCTTAGCACATGAAT
TCATATGTCAGCGAGAAATTATGGCATCTGAGCAGCGGTGTTCAACTTTT
CTGCTAAGCTGAGCTGGGTCCTGGTGATACTTGACAAATATAGCAAGAGC
AACTGGTCCTGTAGGCTGTCATTTACAAGCTTGTCAAAAGCTGGAGGTGA
CAGTTTGGGAAGGGAGGCTACAGTCTCTGAAAGAATACGCCCTACACTAT
TATCAGGTACAGCATGCCCTTCCACAGTGTCATCAACATATTTGTAGATA
TCGTTAATAAGAGTTAGTAGCCGTTCCATCAGGACTTCCATTCCTTCCAA
ATCACTAGGGAGTTTGTCAACCGATGTTGACTTCAGAATATCGAATCCAA
CTCGCTCAGCTTCAATCATTCGAAGATCAAGAGGGATTTCTTGAAATTGT
GCAGCAAGCTGTCGATCTCCAAGAGACAAATTGACAGAAACATAAGCTTT
TACAGTACCCTCTCCATTTCTGAATCCTGTATCTACAGTCAGGTGGACAG
GATTAGGAACTTCGCGACAATAGAATTCATGGATCAAGGCACTGCCACCA
GTGACTCCCAACCCTGTAGAAAACCATCCAACAATCACTTCCTGAGGATT
CACCTTTAGGTGTGACTTTAACATGGTATGATGGTATTCAAT
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