EY665388

Overview
NameEY665388
Unique NameEY665388
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1022
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY665388 vs. ExPASy Swiss-Prot
Match: RS18_CANFA (40S ribosomal protein S18 OS=Canis familiaris GN=RPS18 PE=1 SV=3)

HSP 1 Score: 194.512 bits (493), Expect = 8.148e-51
Identity = 88/128 (68.75%), Postives = 112/128 (87.50%), Query Frame = 1 
Query:   70 MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLEKIRNHRGLRHYWG 453
            MSLV  E FQHILRVLNTN+DG++KI FA+T+IKG+GRR A++V +KAD+D+ KRAGEL+  E++ ++ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++N LD KLR+DLERL+KIR HRGLRH+WG
Sbjct:    1 MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWG 128

HSP 2 Score: 28.4906 bits (62), Expect = 8.148e-51
Identity = 13/20 (65.00%), Postives = 17/20 (85.00%), Query Frame = 3 
Query:  468 GQHTRTTGRRGKGMLGSSQK 527
            GQHT+TTGRRG+  +G S+K
Sbjct:  133 GQHTKTTGRRGR-TVGVSKK 151
[Close]
BLAST of EY665388 vs. ExPASy Swiss-Prot
Match: RS18_BOVIN (40S ribosomal protein S18 OS=Bos taurus GN=RPS18 PE=2 SV=3)

HSP 1 Score: 194.512 bits (493), Expect = 8.148e-51
Identity = 88/128 (68.75%), Postives = 112/128 (87.50%), Query Frame = 1 
Query:   70 MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLEKIRNHRGLRHYWG 453
            MSLV  E FQHILRVLNTN+DG++KI FA+T+IKG+GRR A++V +KAD+D+ KRAGEL+  E++ ++ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++N LD KLR+DLERL+KIR HRGLRH+WG
Sbjct:    1 MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWG 128

HSP 2 Score: 28.4906 bits (62), Expect = 8.148e-51
Identity = 13/20 (65.00%), Postives = 17/20 (85.00%), Query Frame = 3 
Query:  468 GQHTRTTGRRGKGMLGSSQK 527
            GQHT+TTGRRG+  +G S+K
Sbjct:  133 GQHTKTTGRRGR-TVGVSKK 151
[Close]
BLAST of EY665388 vs. ExPASy Swiss-Prot
Match: RS18_CHLRE (40S ribosomal protein S18 OS=Chlamydomonas reinhardtii GN=RPS18 PE=2 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 1.805e-50
Identity = 89/127 (70.08%), Postives = 110/127 (86.61%), Query Frame = 1 
Query:   73 SLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLEKIRNHRGLRHYWG 453
            SLV  +DFQHILR+LNTNVDGK KIM+A+T+I+GIGRR +N+VCKKA+VD+ K AGE SA EL+ +M +VANPR +KIPDWFLNRQKD+K G++SQ+ S+ LD  +RDDLERL+KIR HRGLRHYWG
Sbjct:    3 SLVQGDDFQHILRLLNTNVDGKNKIMYAMTAIRGIGRRFSNLVCKKAEVDLRKAAGECSADELERMMGIVANPRAYKIPDWFLNRQKDHKTGRFSQLTSSQLDTVMRDDLERLKKIRGHRGLRHYWG 129

HSP 2 Score: 26.5646 bits (57), Expect = 1.805e-50
Identity = 10/12 (83.33%), Postives = 11/12 (91.67%), Query Frame = 3 
Query:  468 GQHTRTTGRRGK 503
            GQHT+TTGR GK
Sbjct:  134 GQHTKTTGRAGK 145
[Close]
BLAST of EY665388 vs. ExPASy Swiss-Prot
Match: RS18_SPOFR (40S ribosomal protein S18 OS=Spodoptera frugiperda GN=RpS18 PE=2 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 2.353e-50
Identity = 85/128 (66.41%), Postives = 112/128 (87.50%), Query Frame = 1 
Query:   70 MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLEKIRNHRGLRHYWG 453
            MSLV  + FQHILR++NTN+DGK+K+MFA+T+IKG+GRR +NIV KKAD+D++KRAGE +  E++ ++ +++NPRQ+KIPDWFLNRQKD  DGKYSQ+ S+ LD KLR+DLERL+KIR HRG+RHYWG
Sbjct:    1 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKIVTIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWG 128

HSP 2 Score: 28.4906 bits (62), Expect = 2.353e-50
Identity = 13/20 (65.00%), Postives = 17/20 (85.00%), Query Frame = 3 
Query:  468 GQHTRTTGRRGKGMLGSSQK 527
            GQHT+TTGRRG+  +G S+K
Sbjct:  133 GQHTKTTGRRGR-TVGVSKK 151
[Close]
BLAST of EY665388 vs. ExPASy Swiss-Prot
Match: RS18_DROME (40S ribosomal protein S18 OS=Drosophila melanogaster GN=RpS18 PE=1 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 2.775e-48
Identity = 84/128 (65.62%), Postives = 108/128 (84.38%), Query Frame = 1 
Query:   70 MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLEKIRNHRGLRHYWG 453
            MSLV  E FQHILR++NTN+DGK+K+  A+T+IKG+GRR +NIV KKADVD+ KRAGE +  E+D ++ +++NP Q+K+P+WFLNRQKD  DGKY Q+ S+ LD KLRDDLERL+KIR+HRGLRHYWG
Sbjct:    1 MSLVIPEKFQHILRIMNTNIDGKRKVGIAMTAIKGVGRRYSNIVLKKADVDLTKRAGECTEEEVDKVVTIISNPLQYKVPNWFLNRQKDIIDGKYWQLTSSNLDSKLRDDLERLKKIRSHRGLRHYWG 128

HSP 2 Score: 28.4906 bits (62), Expect = 2.775e-48
Identity = 13/20 (65.00%), Postives = 17/20 (85.00%), Query Frame = 3 
Query:  468 GQHTRTTGRRGKGMLGSSQK 527
            GQHT+TTGRRG+  +G S+K
Sbjct:  133 GQHTKTTGRRGR-TVGVSKK 151
[Close]
BLAST of EY665388 vs. ExPASy Swiss-Prot
Match: RS18_SCHPO (40S ribosomal protein S18 OS=Schizosaccharomyces pombe GN=rps18a PE=1 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 2.775e-48
Identity = 85/125 (68.00%), Postives = 106/125 (84.80%), Query Frame = 1 
Query:   70 MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLEKIRNHRGLRH 444
            MSLV  ++FQHILR+LNTNVDGK K+MFA+T IKG+GRR ANIVCKKAD+DM+KRAGEL+  EL+ ++ ++ NP QFKIP WFLNRQKD  DGK  Q+++N +D KLR+DLERL+KI+ HRGLRH
Sbjct:    1 MSLVVPDNFQHILRLLNTNVDGKVKVMFAMTQIKGVGRRYANIVCKKADIDMSKRAGELTTEELERIVTIIQNPSQFKIPSWFLNRQKDINDGKSFQLLANNVDSKLREDLERLKKIQTHRGLRH 125

HSP 2 Score: 29.6462 bits (65), Expect = 2.775e-48
Identity = 14/20 (70.00%), Postives = 17/20 (85.00%), Query Frame = 3 
Query:  468 GQHTRTTGRRGKGMLGSSQK 527
            GQHT+TTGRRGK  +G S+K
Sbjct:  133 GQHTKTTGRRGK-TVGVSKK 151
[Close]
BLAST of EY665388 vs. ExPASy Swiss-Prot
Match: RS18_DICDI (40S ribosomal protein S18 OS=Dictyostelium discoideum GN=rps18 PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 1.736e-44
Identity = 79/127 (62.20%), Postives = 105/127 (82.68%), Query Frame = 1 
Query:   73 SLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLEKIRNHRGLRHYWG 453
            SLV   +FQHI+R+ NTNVDG++KI +ALT +KG+GRR AN+VCKKAD+D +KRAGELS  E++ L  ++ +PRQ+ IP WFLNRQKD KDGKYS  ++N +D+K R+DLERL+KIR HRG+RH++G
Sbjct:    4 SLVFQGEFQHIIRIYNTNVDGRRKIQYALTCVKGVGRRFANLVCKKADIDTSKRAGELSKDEVERLTTIMNHPRQYNIPTWFLNRQKDIKDGKYSHCLANQIDVKFREDLERLKKIRAHRGVRHHFG 130

HSP 2 Score: 24.2534 bits (51), Expect = 1.736e-44
Identity = 9/12 (75.00%), Postives = 11/12 (91.67%), Query Frame = 3 
Query:  468 GQHTRTTGRRGK 503
            GQ T+TTGRRG+
Sbjct:  135 GQKTKTTGRRGR 146
[Close]
BLAST of EY665388 vs. ExPASy Swiss-Prot
Match: RS18_YEAST (40S ribosomal protein S18 OS=Saccharomyces cerevisiae GN=RPS18A PE=1 SV=4)

HSP 1 Score: 172.17 bits (435), Expect = 5.441e-43
Identity = 81/130 (62.31%), Postives = 104/130 (80.00%), Query Frame = 1 
Query:   70 MSLVANED--FQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLEKIRNHRGLRHYWG 453
            MSLV  E   FQHILR+LNTNVDG  KI++ALT+IKG+GRR +N+VCKKADVD++KRAGEL+  EL+ ++ ++ NP  +KIP WFLNRQ D  DGK    ++N ++ KLRDDLERL+KIR HRG+RH+WG
Sbjct:    1 MSLVVQEQGSFQHILRLLNTNVDGNIKIVYALTTIKGVGRRYSNLVCKKADVDLHKRAGELTQEELERIVQIMQNPTHYKIPAWFLNRQNDITDGKDYHTLANNVESKLRDDLERLKKIRAHRGIRHFWG 130

HSP 2 Score: 24.6386 bits (52), Expect = 5.441e-43
Identity = 9/10 (90.00%), Postives = 10/10 (100.00%), Query Frame = 3 
Query:  468 GQHTRTTGRR 497
            GQHT+TTGRR
Sbjct:  135 GQHTKTTGRR 144
[Close]
BLAST of EY665388 vs. ExPASy Swiss-Prot
Match: RS18_ENTHI (40S ribosomal protein S18 OS=Entamoeba histolytica GN=RPS18 PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 1.171e-39
Identity = 71/135 (52.59%), Postives = 104/135 (77.04%), Query Frame = 1 
Query:   73 SLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLEKIRNHRGLRHYWGPSCPWDNT 477
            ++ +  +FQH+LRV NTN+DG++K+ +ALT IKG GRR A +VCK+A +D+NKRAG ++ AE++ ++ ++     +KIP WFLNRQKD KDGK SQ+++NA++ +LR+D+E L+K+R HRGLRHYWG      NT
Sbjct:    3 TVTSESEFQHMLRVCNTNLDGRRKVPYALTGIKGCGRRYAYLVCKRAGIDVNKRAGLMTPAEIEKIVDILTTQLNYKIPVWFLNRQKDNKDGKDSQLIANAVETRLREDIEALKKMRAHRGLRHYWGLRVRGQNT 137

HSP 2 Score: 25.0238 bits (53), Expect = 1.171e-39
Identity = 9/12 (75.00%), Postives = 12/12 (100.00%), Query Frame = 3 
Query:  468 GQHTRTTGRRGK 503
            GQ+T+TTGRRG+
Sbjct:  134 GQNTKTTGRRGR 145
[Close]
BLAST of EY665388 vs. ExPASy Swiss-Prot
Match: RS13_METST (30S ribosomal protein S13P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rps13p PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 5.416e-24
Identity = 49/125 (39.20%), Postives = 82/125 (65.60%), Query Frame = 1 
Query:   79 VANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLEKIRNHRGLRHYWG 453
            +A ++F+H++R+   +VDG   I  ALT I+GIG+  A  +CK  D+D + + G +    +  +  V+ NP++F IP+WFLNR+ DY+ G+   ++ + L+M LRDDL R++ IR+++G RH  G
Sbjct:    1 MAEQEFRHMVRITRKDVDGNSTIATALTEIRGIGKAFAIAICKVLDLDQDAQIGYIDDESVKQIEAVLENPQEFGIPEWFLNRRNDYETGETKHLIESDLNMTLRDDLNRMKMIRSYKGKRHEVG 125
The following BLAST results are available for this feature:
BLAST of EY665388 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
RS18_CANFA8.148e-5168.7540S ribosomal protein S18 OS=Canis familiaris GN=R... [more]
RS18_BOVIN8.148e-5168.7540S ribosomal protein S18 OS=Bos taurus GN=RPS18 P... [more]
RS18_CHLRE1.805e-5070.0840S ribosomal protein S18 OS=Chlamydomonas reinhar... [more]
RS18_SPOFR2.353e-5066.4140S ribosomal protein S18 OS=Spodoptera frugiperda... [more]
RS18_DROME2.775e-4865.6340S ribosomal protein S18 OS=Drosophila melanogast... [more]
RS18_SCHPO2.775e-4868.0040S ribosomal protein S18 OS=Schizosaccharomyces p... [more]
RS18_DICDI1.736e-4462.2040S ribosomal protein S18 OS=Dictyostelium discoid... [more]
RS18_YEAST5.441e-4362.3140S ribosomal protein S18 OS=Saccharomyces cerevis... [more]
RS18_ENTHI1.171e-3952.5940S ribosomal protein S18 OS=Entamoeba histolytica... [more]
RS13_METST5.416e-2439.2030S ribosomal protein S13P OS=Methanosphaera stadt... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-007-D01-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665388 ID=EY665388; Name=EY665388; organism=Citrus sinensis; type=EST; length=1022bp
ACTTGCTGCAGCTTCATTTGCACGCCGAAGAGCCTCTCTTCTCTTCATCA
TCAATCCTCACAATCGAAAATGTCTCTGGTGGCGAACGAAGATTTTCAGC
ACATTTTGCGTGTGCTGAACACTAACGTCGACGGGAAGCAGAAGATTATG
TTTGCTCTTACTTCAATTAAGGGTATTGGAAGGCGACTGGCTAACATCGT
TTGCAAGAAAGCTGATGTTGACATGAACAAGAGGGCCGGTGAACTATCTG
CTGCTGAACTTGACAATCTCATGGTCGTTGTTGCAAATCCCCGACAGTTT
AAAATCCCTGATTGGTTCTTGAACAGACAGAAGGATTACAAAGATGGAAA
GTATTCTCAGGTTGTATCCAATGCACTGGACATGAAGTTGAGAGATGATT
TGGAGCGTCTGGAAAAGATCAGGAACCACCGTGGTCTCAGGCACTACTGG
GGTCCTTCGTGTCCGTGGGACAACACACCAGGACCACGGGTCGTCGTGGG
AAAGGAATGTTGGGGTCCTCCCAAAAACCGTTGAACCTGTCCCGTAATAA
ATGGGTTTAGAAAAATACTAAAAACCAAGGTTCAAGAAAAAAATTTGGAA
ATGGCTATTGCTAAAATTTTTCGAAACCGAAAAAAGTGGAATTATTTTTT
CTTTCATAAGACAGGGGGATTTAGCGAGTAAGAAAGGGAGAGGGCCTAAA
TACAAACGATGATGGCGACGAGGGAGAGAGAGTAAGCGAGAACGACAGGC
CGGGGACGCACAAAAGAGAAAAACGAGAGAGAGAACAAAAAGGGAGGGGG
GGCGGGCCAAAAAAGAAGCCTACCAGACACACAAGGAACGCCAATCGACG
TGAACTAAAAAAAGGCAGAAAAGAGACATAACAGAGAGAGAAACAGGCAA
ACAAACCACACGGCCCCAAAGCCAGGAAAAATCAACAATAAATAGGAACG
GAACAGACACGAGAAAAGAAGAAACCTAGAGAATCACAGGCGCAGAGCTA
CGACGACAGGGCGGGAGAACTA
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