EY665388
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY665388 vs. ExPASy Swiss-Prot
Match: RS13_STAMF (30S ribosomal protein S13P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rps13p PE=3 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 7.926e-20 Identity = 43/121 (35.54%), Postives = 75/121 (61.98%), Query Frame = 1 Query: 91 DFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLEKIRNHRGLRHYWG 453 ++++I+R+ T++DG K ++ L IKG+G LA +C++ +D R G L+ E+ + +++NP + IP W LNR+KDY GK ++ L ++ D+ER +KI++ RG+RH G Sbjct: 6 NYRYIVRIAGTDIDGSLKTVYGLAEIKGVGVNLAYGICRRLGIDPEMRIGYLTDEEIKRIEDLLSNPSAYDIPSWMLNRRKDYVTGKDMHLIGAELIFYVKQDIEREKKIKSWRGIRHALG 126 HSP 2 Score: 22.3274 bits (46), Expect = 7.926e-20 Identity = 9/11 (81.82%), Postives = 9/11 (81.82%), Query Frame = 3 Query: 468 GQHTRTTGRRG 500 GQ TRTTGR G Sbjct: 131 GQRTRTTGRLG 141
BLAST of EY665388 vs. ExPASy Swiss-Prot
Match: RS18_ENCCU (40S ribosomal protein S18 OS=Encephalitozoon cuniculi GN=RPS18 PE=1 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 1.803e-19 Identity = 46/117 (39.32%), Postives = 73/117 (62.39%), Query Frame = 1 Query: 91 DFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLEKIRNHRGLR 441 + Q+I+R+ NTN+DG ++I FALT I+GIG R+A +CK+ +D+ KRAGE+ E+ + + +P IP+ ++N Q+D DG S ++ LD LR +ER +K + R R Sbjct: 9 EVQYIVRIHNTNIDGTKRIPFALTKIRGIGIRIATAICKRLGIDLRKRAGEMGEDEMKRISDAILDPASVGIPESYMNHQRDIIDGTTSHLIGTRLDADLRMMIERGKKNKRIRAYR 125
BLAST of EY665388 vs. ExPASy Swiss-Prot
Match: RS13_THEVO (30S ribosomal protein S13P OS=Thermoplasma volcanium GN=rps13p PE=3 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 3.075e-19 Identity = 43/123 (34.96%), Postives = 83/123 (67.48%), Query Frame = 1 Query: 85 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLEKIRNHRGLRHYWG 453 N+DFQ+I+R+ N +++G++ I AL+ +KGIG RL + ++ ++ K+ GEL E++ L V N +++ +PDW LN +++ GK +V+ LD+++++D+ ++KIR+++G+RH G Sbjct: 25 NKDFQYIVRIANKDLNGERPIPLALSDLKGIGLRLGYAIAERLNLQPTKKIGELKEDEIEKLKEYVEN-KEYDLPDWLLNHRREPVTGKNLNLVTTDLDVQVQEDINLMKKIRSYKGIRHEKG 146
BLAST of EY665388 vs. ExPASy Swiss-Prot
Match: RS13_THEAC (30S ribosomal protein S13P OS=Thermoplasma acidophilum GN=rps13p PE=3 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 3.075e-19 Identity = 41/123 (33.33%), Postives = 85/123 (69.11%), Query Frame = 1 Query: 85 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLEKIRNHRGLRHYWG 453 N+DFQ+I+R+ N +++G++ + AL+ +KGIG RL ++ ++ D+ ++K+ GEL +L+ L V +++ +P+W LN +++ GK +VS L++++++D+ ++KIR+++G+RH G Sbjct: 25 NKDFQYIVRIANKDLNGERLLPLALSDLKGIGERLGYVIAERLDLPIDKKIGELKEEQLEKLREYV-EAKEYDLPEWLLNHRREPVTGKNLNLVSTDLEIQVQEDINLMKKIRSYKGIRHEKG 146
BLAST of EY665388 vs. ExPASy Swiss-Prot
Match: RS13_SULSO (30S ribosomal protein S13P OS=Sulfolobus solfataricus GN=rps13p PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 6.462e-19 Identity = 45/123 (36.59%), Postives = 76/123 (61.79%), Query Frame = 1 Query: 85 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLEKIRNHRGLRHYWG 453 ++ F++++R+ +VDG K+ +AL +KGIG A + +K +D N R GELS AE+ + V+++ +P W NR+KDY+ G +V++ L +R+D+ER +K R+ RG+RH G Sbjct: 2 SQQFKYVVRIFGQDVDGTMKLPYALAMVKGIGYNTAKAIIRKLGMDPNARLGELSDAEVKKVESVISDHTIKGLPSWLYNRRKDYESGLDLHLVTSDLIFYVRNDIEREKKSRSWRGVRHSLG 124 HSP 2 Score: 22.7126 bits (47), Expect = 6.462e-19 Identity = 9/11 (81.82%), Postives = 9/11 (81.82%), Query Frame = 3 Query: 468 GQHTRTTGRRG 500 GQ TRTTGR G Sbjct: 129 GQRTRTTGRTG 139
BLAST of EY665388 vs. ExPASy Swiss-Prot
Match: RS13_METAC (30S ribosomal protein S13P OS=Methanosarcina acetivorans GN=rps13p PE=3 SV=2) HSP 1 Score: 92.0485 bits (227), Expect = 1.094e-18 Identity = 43/123 (34.96%), Postives = 72/123 (58.54%), Query Frame = 1 Query: 85 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLEKIRNHRGLRHYWG 453 NE+ +H++R++NT++ G + + +ALT + G+GRR A ++ K A VD + G L E+ L + +P W LNRQKD G+ ++ + + R+D+ L+K+R +RGLRH G Sbjct: 17 NEELRHLVRIMNTDLQGAKPVQYALTGLPGVGRRTAKLIAKGAGVDPSAILGYLPEEEVAKLDTAIGKFEDI-VPSWMLNRQKDLATGQDKHLLGTDILLTFREDINNLKKVRAYRGLRHERG 138 HSP 2 Score: 23.0978 bits (48), Expect = 1.094e-18 Identity = 11/20 (55.00%), Postives = 15/20 (75.00%), Query Frame = 3 Query: 468 GQHTRTTGRRGKGMLGSSQK 527 GQ T++TGRRG +G S+K Sbjct: 143 GQRTKSTGRRG-STVGVSRK 161
BLAST of EY665388 vs. ExPASy Swiss-Prot
Match: RS13_UNCMA (30S ribosomal protein S13P OS=Uncultured methanogenic archaeon RC-I GN=rps13p PE=3 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 1.526e-18 Identity = 44/122 (36.07%), Postives = 78/122 (63.93%), Query Frame = 1 Query: 88 EDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLEKIRNHRGLRHYWG 453 ++ ++I+R+ NT++DG Q + FALT IKGIG R++ I+ ++A VD + G L ++D L V+ N + +P W LNR++D G+ + L M +++D+ ++KIR+++G+RH G Sbjct: 67 DEIKYIVRIANTDLDGTQTVEFALTGIKGIGNRISKIIARQAQVDPHATMGYLPPEQVDKLRAVIDN-LEANVPVWMLNRRRDIYTGEDKHLYGVDLTMAVKEDINIMKKIRSYKGIRHERG 187
BLAST of EY665388 vs. ExPASy Swiss-Prot
Match: RS13_SULAC (30S ribosomal protein S13P OS=Sulfolobus acidocaldarius GN=rps13p PE=3 SV=2) HSP 1 Score: 91.6633 bits (226), Expect = 1.845e-18 Identity = 45/125 (36.00%), Postives = 78/125 (62.40%), Query Frame = 1 Query: 79 VANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLEKIRNHRGLRHYWG 453 ++ + F++I+R+ +VDG K+ +AL IKGIG A I+ +K ++D +KR GE+S ++ + ++ N + P+W NRQKDY+ G +V++ L +R+D+ER + R+ RG+RH G Sbjct: 1 MSQQQFKYIVRLFGQDVDGTMKLPYALAMIKGIGYNTAMIIIRKLNLDKDKRLGEISDEDIKKIENLLNNKIIPESPNWIYNRQKDYESGADMHLVTSDLIFYVRNDIERERRSRSWRGVRHSLG 125 HSP 2 Score: 22.7126 bits (47), Expect = 1.845e-18 Identity = 9/11 (81.82%), Postives = 9/11 (81.82%), Query Frame = 3 Query: 468 GQHTRTTGRRG 500 GQ TRTTGR G Sbjct: 130 GQRTRTTGRTG 140
BLAST of EY665388 vs. ExPASy Swiss-Prot
Match: RS13_METTP (30S ribosomal protein S13P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rps13p PE=3 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 1.993e-18 Identity = 47/121 (38.84%), Postives = 76/121 (62.81%), Query Frame = 1 Query: 91 DFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLEKIRNHRGLRHYWG 453 + +HI+R+ NT++DGK+++ ALT IKG+GRRLA + KA VD G+L +++ L V+ + R IP W +NR+KD G V+ + LR+DL+ ++K R+++G+RH G Sbjct: 11 ELRHIVRIYNTDLDGKKQVQMALTGIKGVGRRLARVFAVKAGVDPCATLGKLPEEQIEALKNVIESVRD-NIPAWMMNRRKDIITGVDKHVMGAEVLTTLREDLDIMKKTRSYKGIRHELG 130
BLAST of EY665388 vs. ExPASy Swiss-Prot
Match: RS13_METMA (30S ribosomal protein S13P OS=Methanosarcina mazei GN=rps13p PE=3 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 2.407e-18 Identity = 44/123 (35.77%), Postives = 72/123 (58.54%), Query Frame = 1 Query: 85 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLEKIRNHRGLRHYWG 453 NE+ +H++R++NT++ G + + +ALT + GIGRR A ++ K A VD G L E+ L + + +P W LNRQKD G+ ++ + + R+D+ L+K+R +RGLRH G Sbjct: 17 NEELRHLVRIMNTDLKGAKPVEYALTGLPGIGRRTAILIAKGAGVDPTATLGYLPDEEVAKLDAAIGKFEEI-VPSWMLNRQKDLTTGQDKHLLGTDILLTFREDINNLKKVRAYRGLRHERG 138 HSP 2 Score: 23.0978 bits (48), Expect = 2.407e-18 Identity = 11/20 (55.00%), Postives = 15/20 (75.00%), Query Frame = 3 Query: 468 GQHTRTTGRRGKGMLGSSQK 527 GQ T++TGRRG +G S+K Sbjct: 143 GQRTKSTGRRG-STVGVSRK 161 The following BLAST results are available for this feature:
BLAST of EY665388 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 60
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Sequences
The
following sequences are available for this feature:
EST sequence >EY665388 ID=EY665388; Name=EY665388; organism=Citrus sinensis; type=EST; length=1022bpback to top |