EY665388

Overview
NameEY665388
Unique NameEY665388
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1022
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665388 vs. ExPASy Swiss-Prot
Match: RS13_STAMF (30S ribosomal protein S13P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rps13p PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 7.926e-20
Identity = 43/121 (35.54%), Postives = 75/121 (61.98%), Query Frame = 1
Query:   91 DFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLEKIRNHRGLRHYWG 453
            ++++I+R+  T++DG  K ++ L  IKG+G  LA  +C++  +D   R G L+  E+  +  +++NP  + IP W LNR+KDY  GK   ++   L   ++ D+ER +KI++ RG+RH  G
Sbjct:    6 NYRYIVRIAGTDIDGSLKTVYGLAEIKGVGVNLAYGICRRLGIDPEMRIGYLTDEEIKRIEDLLSNPSAYDIPSWMLNRRKDYVTGKDMHLIGAELIFYVKQDIEREKKIKSWRGIRHALG 126          

HSP 2 Score: 22.3274 bits (46), Expect = 7.926e-20
Identity = 9/11 (81.82%), Postives = 9/11 (81.82%), Query Frame = 3
Query:  468 GQHTRTTGRRG 500
            GQ TRTTGR G
Sbjct:  131 GQRTRTTGRLG 141          
BLAST of EY665388 vs. ExPASy Swiss-Prot
Match: RS18_ENCCU (40S ribosomal protein S18 OS=Encephalitozoon cuniculi GN=RPS18 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.803e-19
Identity = 46/117 (39.32%), Postives = 73/117 (62.39%), Query Frame = 1
Query:   91 DFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLEKIRNHRGLR 441
            + Q+I+R+ NTN+DG ++I FALT I+GIG R+A  +CK+  +D+ KRAGE+   E+  +   + +P    IP+ ++N Q+D  DG  S ++   LD  LR  +ER +K +  R  R
Sbjct:    9 EVQYIVRIHNTNIDGTKRIPFALTKIRGIGIRIATAICKRLGIDLRKRAGEMGEDEMKRISDAILDPASVGIPESYMNHQRDIIDGTTSHLIGTRLDADLRMMIERGKKNKRIRAYR 125          
BLAST of EY665388 vs. ExPASy Swiss-Prot
Match: RS13_THEVO (30S ribosomal protein S13P OS=Thermoplasma volcanium GN=rps13p PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 3.075e-19
Identity = 43/123 (34.96%), Postives = 83/123 (67.48%), Query Frame = 1
Query:   85 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLEKIRNHRGLRHYWG 453
            N+DFQ+I+R+ N +++G++ I  AL+ +KGIG RL   + ++ ++   K+ GEL   E++ L   V N +++ +PDW LN +++   GK   +V+  LD+++++D+  ++KIR+++G+RH  G
Sbjct:   25 NKDFQYIVRIANKDLNGERPIPLALSDLKGIGLRLGYAIAERLNLQPTKKIGELKEDEIEKLKEYVEN-KEYDLPDWLLNHRREPVTGKNLNLVTTDLDVQVQEDINLMKKIRSYKGIRHEKG 146          
BLAST of EY665388 vs. ExPASy Swiss-Prot
Match: RS13_THEAC (30S ribosomal protein S13P OS=Thermoplasma acidophilum GN=rps13p PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 3.075e-19
Identity = 41/123 (33.33%), Postives = 85/123 (69.11%), Query Frame = 1
Query:   85 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLEKIRNHRGLRHYWG 453
            N+DFQ+I+R+ N +++G++ +  AL+ +KGIG RL  ++ ++ D+ ++K+ GEL   +L+ L   V   +++ +P+W LN +++   GK   +VS  L++++++D+  ++KIR+++G+RH  G
Sbjct:   25 NKDFQYIVRIANKDLNGERLLPLALSDLKGIGERLGYVIAERLDLPIDKKIGELKEEQLEKLREYV-EAKEYDLPEWLLNHRREPVTGKNLNLVSTDLEIQVQEDINLMKKIRSYKGIRHEKG 146          
BLAST of EY665388 vs. ExPASy Swiss-Prot
Match: RS13_SULSO (30S ribosomal protein S13P OS=Sulfolobus solfataricus GN=rps13p PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 6.462e-19
Identity = 45/123 (36.59%), Postives = 76/123 (61.79%), Query Frame = 1
Query:   85 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLEKIRNHRGLRHYWG 453
            ++ F++++R+   +VDG  K+ +AL  +KGIG   A  + +K  +D N R GELS AE+  +  V+++     +P W  NR+KDY+ G    +V++ L   +R+D+ER +K R+ RG+RH  G
Sbjct:    2 SQQFKYVVRIFGQDVDGTMKLPYALAMVKGIGYNTAKAIIRKLGMDPNARLGELSDAEVKKVESVISDHTIKGLPSWLYNRRKDYESGLDLHLVTSDLIFYVRNDIEREKKSRSWRGVRHSLG 124          

HSP 2 Score: 22.7126 bits (47), Expect = 6.462e-19
Identity = 9/11 (81.82%), Postives = 9/11 (81.82%), Query Frame = 3
Query:  468 GQHTRTTGRRG 500
            GQ TRTTGR G
Sbjct:  129 GQRTRTTGRTG 139          
BLAST of EY665388 vs. ExPASy Swiss-Prot
Match: RS13_METAC (30S ribosomal protein S13P OS=Methanosarcina acetivorans GN=rps13p PE=3 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 1.094e-18
Identity = 43/123 (34.96%), Postives = 72/123 (58.54%), Query Frame = 1
Query:   85 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLEKIRNHRGLRHYWG 453
            NE+ +H++R++NT++ G + + +ALT + G+GRR A ++ K A VD +   G L   E+  L   +       +P W LNRQKD   G+   ++   + +  R+D+  L+K+R +RGLRH  G
Sbjct:   17 NEELRHLVRIMNTDLQGAKPVQYALTGLPGVGRRTAKLIAKGAGVDPSAILGYLPEEEVAKLDTAIGKFEDI-VPSWMLNRQKDLATGQDKHLLGTDILLTFREDINNLKKVRAYRGLRHERG 138          

HSP 2 Score: 23.0978 bits (48), Expect = 1.094e-18
Identity = 11/20 (55.00%), Postives = 15/20 (75.00%), Query Frame = 3
Query:  468 GQHTRTTGRRGKGMLGSSQK 527
            GQ T++TGRRG   +G S+K
Sbjct:  143 GQRTKSTGRRG-STVGVSRK 161          
BLAST of EY665388 vs. ExPASy Swiss-Prot
Match: RS13_UNCMA (30S ribosomal protein S13P OS=Uncultured methanogenic archaeon RC-I GN=rps13p PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.526e-18
Identity = 44/122 (36.07%), Postives = 78/122 (63.93%), Query Frame = 1
Query:   88 EDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLEKIRNHRGLRHYWG 453
            ++ ++I+R+ NT++DG Q + FALT IKGIG R++ I+ ++A VD +   G L   ++D L  V+ N  +  +P W LNR++D   G+   +    L M +++D+  ++KIR+++G+RH  G
Sbjct:   67 DEIKYIVRIANTDLDGTQTVEFALTGIKGIGNRISKIIARQAQVDPHATMGYLPPEQVDKLRAVIDN-LEANVPVWMLNRRRDIYTGEDKHLYGVDLTMAVKEDINIMKKIRSYKGIRHERG 187          
BLAST of EY665388 vs. ExPASy Swiss-Prot
Match: RS13_SULAC (30S ribosomal protein S13P OS=Sulfolobus acidocaldarius GN=rps13p PE=3 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 1.845e-18
Identity = 45/125 (36.00%), Postives = 78/125 (62.40%), Query Frame = 1
Query:   79 VANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLEKIRNHRGLRHYWG 453
            ++ + F++I+R+   +VDG  K+ +AL  IKGIG   A I+ +K ++D +KR GE+S  ++  +  ++ N    + P+W  NRQKDY+ G    +V++ L   +R+D+ER  + R+ RG+RH  G
Sbjct:    1 MSQQQFKYIVRLFGQDVDGTMKLPYALAMIKGIGYNTAMIIIRKLNLDKDKRLGEISDEDIKKIENLLNNKIIPESPNWIYNRQKDYESGADMHLVTSDLIFYVRNDIERERRSRSWRGVRHSLG 125          

HSP 2 Score: 22.7126 bits (47), Expect = 1.845e-18
Identity = 9/11 (81.82%), Postives = 9/11 (81.82%), Query Frame = 3
Query:  468 GQHTRTTGRRG 500
            GQ TRTTGR G
Sbjct:  130 GQRTRTTGRTG 140          
BLAST of EY665388 vs. ExPASy Swiss-Prot
Match: RS13_METTP (30S ribosomal protein S13P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rps13p PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.993e-18
Identity = 47/121 (38.84%), Postives = 76/121 (62.81%), Query Frame = 1
Query:   91 DFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLEKIRNHRGLRHYWG 453
            + +HI+R+ NT++DGK+++  ALT IKG+GRRLA +   KA VD     G+L   +++ L  V+ + R   IP W +NR+KD   G    V+   +   LR+DL+ ++K R+++G+RH  G
Sbjct:   11 ELRHIVRIYNTDLDGKKQVQMALTGIKGVGRRLARVFAVKAGVDPCATLGKLPEEQIEALKNVIESVRD-NIPAWMMNRRKDIITGVDKHVMGAEVLTTLREDLDIMKKTRSYKGIRHELG 130          
BLAST of EY665388 vs. ExPASy Swiss-Prot
Match: RS13_METMA (30S ribosomal protein S13P OS=Methanosarcina mazei GN=rps13p PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.407e-18
Identity = 44/123 (35.77%), Postives = 72/123 (58.54%), Query Frame = 1
Query:   85 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLEKIRNHRGLRHYWG 453
            NE+ +H++R++NT++ G + + +ALT + GIGRR A ++ K A VD     G L   E+  L   +    +  +P W LNRQKD   G+   ++   + +  R+D+  L+K+R +RGLRH  G
Sbjct:   17 NEELRHLVRIMNTDLKGAKPVEYALTGLPGIGRRTAILIAKGAGVDPTATLGYLPDEEVAKLDAAIGKFEEI-VPSWMLNRQKDLTTGQDKHLLGTDILLTFREDINNLKKVRAYRGLRHERG 138          

HSP 2 Score: 23.0978 bits (48), Expect = 2.407e-18
Identity = 11/20 (55.00%), Postives = 15/20 (75.00%), Query Frame = 3
Query:  468 GQHTRTTGRRGKGMLGSSQK 527
            GQ T++TGRRG   +G S+K
Sbjct:  143 GQRTKSTGRRG-STVGVSRK 161          
The following BLAST results are available for this feature:
BLAST of EY665388 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
RS13_STAMF7.926e-2035.5430S ribosomal protein S13P OS=Staphylothermus mari... [more]
RS18_ENCCU1.803e-1939.3240S ribosomal protein S18 OS=Encephalitozoon cunic... [more]
RS13_THEVO3.075e-1934.9630S ribosomal protein S13P OS=Thermoplasma volcani... [more]
RS13_THEAC3.075e-1933.3330S ribosomal protein S13P OS=Thermoplasma acidoph... [more]
RS13_SULSO6.462e-1936.5930S ribosomal protein S13P OS=Sulfolobus solfatari... [more]
RS13_METAC1.094e-1834.9630S ribosomal protein S13P OS=Methanosarcina aceti... [more]
RS13_UNCMA1.526e-1836.0730S ribosomal protein S13P OS=Uncultured methanoge... [more]
RS13_SULAC1.845e-1836.0030S ribosomal protein S13P OS=Sulfolobus acidocald... [more]
RS13_METTP1.993e-1838.8430S ribosomal protein S13P OS=Methanosaeta thermop... [more]
RS13_METMA2.407e-1835.7730S ribosomal protein S13P OS=Methanosarcina mazei... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-007-D01-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665388 ID=EY665388; Name=EY665388; organism=Citrus sinensis; type=EST; length=1022bp
ACTTGCTGCAGCTTCATTTGCACGCCGAAGAGCCTCTCTTCTCTTCATCA
TCAATCCTCACAATCGAAAATGTCTCTGGTGGCGAACGAAGATTTTCAGC
ACATTTTGCGTGTGCTGAACACTAACGTCGACGGGAAGCAGAAGATTATG
TTTGCTCTTACTTCAATTAAGGGTATTGGAAGGCGACTGGCTAACATCGT
TTGCAAGAAAGCTGATGTTGACATGAACAAGAGGGCCGGTGAACTATCTG
CTGCTGAACTTGACAATCTCATGGTCGTTGTTGCAAATCCCCGACAGTTT
AAAATCCCTGATTGGTTCTTGAACAGACAGAAGGATTACAAAGATGGAAA
GTATTCTCAGGTTGTATCCAATGCACTGGACATGAAGTTGAGAGATGATT
TGGAGCGTCTGGAAAAGATCAGGAACCACCGTGGTCTCAGGCACTACTGG
GGTCCTTCGTGTCCGTGGGACAACACACCAGGACCACGGGTCGTCGTGGG
AAAGGAATGTTGGGGTCCTCCCAAAAACCGTTGAACCTGTCCCGTAATAA
ATGGGTTTAGAAAAATACTAAAAACCAAGGTTCAAGAAAAAAATTTGGAA
ATGGCTATTGCTAAAATTTTTCGAAACCGAAAAAAGTGGAATTATTTTTT
CTTTCATAAGACAGGGGGATTTAGCGAGTAAGAAAGGGAGAGGGCCTAAA
TACAAACGATGATGGCGACGAGGGAGAGAGAGTAAGCGAGAACGACAGGC
CGGGGACGCACAAAAGAGAAAAACGAGAGAGAGAACAAAAAGGGAGGGGG
GGCGGGCCAAAAAAGAAGCCTACCAGACACACAAGGAACGCCAATCGACG
TGAACTAAAAAAAGGCAGAAAAGAGACATAACAGAGAGAGAAACAGGCAA
ACAAACCACACGGCCCCAAAGCCAGGAAAAATCAACAATAAATAGGAACG
GAACAGACACGAGAAAAGAAGAAACCTAGAGAATCACAGGCGCAGAGCTA
CGACGACAGGGCGGGAGAACTA
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