EY665388

Overview
NameEY665388
Unique NameEY665388
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1022
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665388 vs. ExPASy Swiss-Prot
Match: RS13_NATPD (30S ribosomal protein S13P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rps13p PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.604e-18
Identity = 45/123 (36.59%), Postives = 75/123 (60.98%), Query Frame = 1
Query:   85 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLEKIRNHRGLRHYWG 453
            +ED Q+ +R+  T++DG + +  ALT + GIGRR+A I+ +KA+VD     G L   ++D+++  V      ++P+W  N QKD+  G+ +  + N L M  R D+ R++KI  +RG+RH  G
Sbjct:   12 DEDLQYFVRIGQTDLDGTKSVERALTDMNGIGRRVARIIAEKAEVDRRDVLGALDEEKIDDVVAAVEEYGD-EVPEWLTNHQKDFFTGETTHEIGNDLQMSRRQDINRMKKIDAYRGVRHKRG 133          
BLAST of EY665388 vs. ExPASy Swiss-Prot
Match: RS13_SULTO (30S ribosomal protein S13P OS=Sulfolobus tokodaii GN=rps13p PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 4.053e-18
Identity = 42/122 (34.43%), Postives = 76/122 (62.30%), Query Frame = 1
Query:   88 EDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLEKIRNHRGLRHYWG 453
            + F++I+R+   +VDG  K+ +AL  +KGIG   A  +  K  +D ++R GELS  ++  +   + + +  ++P+W  NR+KDY+ G    +V++ L   +R+D+ER +KI++ RG+RH  G
Sbjct:    5 QQFKYIVRLFGQDVDGTMKVPYALAMVKGIGYNTARAIVFKLGLDKDRRLGELSDEDIKKIENYLTDKKILEVPNWMYNRRKDYESGIDMHLVTSDLIFYVRNDIEREKKIKSWRGVRHSLG 126          

HSP 2 Score: 22.7126 bits (47), Expect = 4.053e-18
Identity = 9/11 (81.82%), Postives = 9/11 (81.82%), Query Frame = 3
Query:  468 GQHTRTTGRRG 500
            GQ TRTTGR G
Sbjct:  131 GQRTRTTGRTG 141          
BLAST of EY665388 vs. ExPASy Swiss-Prot
Match: RS13_METBF (30S ribosomal protein S13P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rps13p PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 4.070e-18
Identity = 45/123 (36.59%), Postives = 72/123 (58.54%), Query Frame = 1
Query:   85 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLEKIRNHRGLRHYWG 453
            NE+ +H++R++NT++ G + + +ALT + GIGRR A ++ K A VD     G L   E+  L   + N     +P W LNRQKD   G+   ++   + +  R+D+  L+K+R +RGLRH  G
Sbjct:   17 NEEIRHLVRIMNTDLKGAKPVEYALTGLPGIGRRTAILIAKGAGVDPTATLGYLPDEEVAKLDRAIGNFEGI-VPSWMLNRQKDLATGQDKHLLGTDILLTFREDINNLKKVRAYRGLRHERG 138          

HSP 2 Score: 22.7126 bits (47), Expect = 4.070e-18
Identity = 10/20 (50.00%), Postives = 14/20 (70.00%), Query Frame = 3
Query:  468 GQHTRTTGRRGKGMLGSSQK 527
            GQ T++TGRRG  +  S +K
Sbjct:  143 GQRTKSTGRRGSTVGVSRRK 162          
BLAST of EY665388 vs. ExPASy Swiss-Prot
Match: RS13_ARCFU (30S ribosomal protein S13P OS=Archaeoglobus fulgidus GN=rps13p PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.357e-17
Identity = 45/120 (37.50%), Postives = 71/120 (59.17%), Query Frame = 1
Query:   94 FQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLEKIRNHRGLRHYWG 453
            F+HI+R+ +T++DG + +MFALT IKGIG R A  +  +  VD   + GEL    ++ +   V    +  +P W LNR+KD   G+   ++S  +D     D+ERL K++ +RG+RH  G
Sbjct:    3 FKHIVRIADTDLDGNKSLMFALTGIKGIGLRAARCIVNELGVDGRAKLGELDDETIEKVKKFVEEEIE-SLPSWLLNRRKDPYSGQDLHLLSKDVDFARMLDIERLIKMKAYRGVRHARG 121          

HSP 2 Score: 23.0978 bits (48), Expect = 4.357e-17
Identity = 8/12 (66.67%), Postives = 11/12 (91.67%), Query Frame = 3
Query:  468 GQHTRTTGRRGK 503
            GQ TR+TGR+G+
Sbjct:  126 GQRTRSTGRKGR 137          
BLAST of EY665388 vs. ExPASy Swiss-Prot
Match: RS13_METBU (30S ribosomal protein S13P OS=Methanococcoides burtonii (strain DSM 6242) GN=rps13p PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.243e-16
Identity = 42/125 (33.60%), Postives = 76/125 (60.80%), Query Frame = 1
Query:   79 VANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLEKIRNHRGLRHYWG 453
            +A+E+ +H++R++NT++ GK+ + +ALT I+GIG R + ++     +D N   G LS  ++  L   + +  + ++P W LNRQ D   G+   ++   + + L++DL  L+K R +RGLRH  G
Sbjct:    1 MADEEIRHLVRIMNTDLQGKKPVKYALTGIRGIGLRTSRVIVDSTGIDPNAVIGYLSDEDIKKLDSTI-DKFEEQLPKWMLNRQFDPLTGENKHLLGQDIILTLKEDLNDLKKSRAYRGLRHERG 124          

HSP 2 Score: 22.3274 bits (46), Expect = 1.243e-16
Identity = 8/11 (72.73%), Postives = 10/11 (90.91%), Query Frame = 3
Query:  468 GQHTRTTGRRG 500
            GQ T++TGRRG
Sbjct:  129 GQRTKSTGRRG 139          
BLAST of EY665388 vs. ExPASy Swiss-Prot
Match: RS13_AERPE (30S ribosomal protein S13P OS=Aeropyrum pernix GN=rps13p PE=3 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 1.243e-16
Identity = 44/126 (34.92%), Postives = 70/126 (55.56%), Query Frame = 1
Query:   76 LVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLEKIRNHRGLRHYWG 453
            +     F++I+R+   ++DG  K+ + L SIKGIG   A  V +   +D  K+ G L+  E+  L  V+ +  Q  +P W  NR+KDY+ GK   ++ + L    R D+ER  KI + RG+RH +G
Sbjct:    1 MAGETSFKYIVRIAGVDIDGDLKLPYGLASIKGIGYTTAMAVIRMLGLDPEKKVGFLTEEEIRRLDEVLRDITQLGLPKWLYNRRKDYETGKDLHLIGSELIFYARRDIEREMKIGSWRGIRHKYG 126          

HSP 2 Score: 22.3274 bits (46), Expect = 1.243e-16
Identity = 9/11 (81.82%), Postives = 9/11 (81.82%), Query Frame = 3
Query:  468 GQHTRTTGRRG 500
            GQ TRTTGR G
Sbjct:  131 GQRTRTTGRLG 141          
BLAST of EY665388 vs. ExPASy Swiss-Prot
Match: RS13_METHJ (30S ribosomal protein S13P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps13p PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 2.437e-16
Identity = 44/123 (35.77%), Postives = 72/123 (58.54%), Query Frame = 1
Query:   85 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLEKIRNHRGLRHYWG 453
            +++  + +RV NT++DG + ++ +LT IKG+GR  A  + + A V+ N   G+L  A +D +  VV+N    +IP W  NR KD   G    ++   + M + DD+  L+KIR +RG+RH  G
Sbjct:    5 DQEINYFVRVHNTDLDGTKPVLISLTGIKGVGRHTAKFIAETAGVEKNVLMGKLDEASVDRIREVVSNYAD-RIPVWMSNRPKDVYTGVKRHLLGADVTMTVDDDINLLKKIRAYRGIRHETG 126          
BLAST of EY665388 vs. ExPASy Swiss-Prot
Match: RS13_METMP (30S ribosomal protein S13P OS=Methanococcus maripaludis GN=rps13p PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 7.090e-16
Identity = 40/131 (30.53%), Postives = 75/131 (57.25%), Query Frame = 1
Query:   91 DFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLEKIRNHRGLRHYWGPSCPWDNTPG 483
            +F+H +R+  T+++GK  + +AL  +KGIGR +A  V +  ++D  ++AG L+  ++  +  V+ +P    IP W  NR+KD   G    ++   L + +++D+  ++KIR ++G+RH     C    T G
Sbjct:    5 EFKHRIRISKTDLEGKNPLEYALQDMKGIGRAMARAVIRVTELDPKQQAGYLADEDVLKIESVLEDPATHGIPSWMFNRKKDVYSGLDKHLIETDLVLTVQEDITNMKKIRCYKGIRHELRLPCRGQRTRG 135          
BLAST of EY665388 vs. ExPASy Swiss-Prot
Match: RS13_HALMA (30S ribosomal protein S13P OS=Haloarcula marismortui GN=rps13p PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.209e-15
Identity = 43/122 (35.25%), Postives = 70/122 (57.38%), Query Frame = 1
Query:   88 EDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLEKIRNHRGLRHYWG 453
            ED ++ +R+  T++DG + +  ALT + GIG R A I+ +KADVD     G+L    ++ ++  V N     +P+W  N QKDY  G+ +    N L +  R D+ R++ I ++RG+RH  G
Sbjct:   18 EDIRYFVRIGQTDLDGTKSVERALTELNGIGHRAARIIAQKADVDRRAVFGKLDDDVIERVVERVENFAD-DVPEWMTNHQKDYFTGETTHETGNDLQLTRRQDINRMKMIDSYRGVRHKRG 138          
BLAST of EY665388 vs. ExPASy Swiss-Prot
Match: RS13_THEPD (30S ribosomal protein S13P OS=Thermofilum pendens (strain Hrk 5) GN=rps13p PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.881e-15
Identity = 40/121 (33.06%), Postives = 73/121 (60.33%), Query Frame = 1
Query:   91 DFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLEKIRNHRGLRHYWG 453
            +F++I+RV   ++ G + +++AL  IKGIG   A  V KK  +D  +  G LS  E++ L   +    +  +P W LNR+KD   G    ++++ L + +R+D+E ++KI++++G+RH  G
Sbjct:    4 EFRYIVRVAGVDLPGDKALVYALADIKGIGVSTAQAVAKKLGLDPYRLLGTLSEEEVEKLSAALREIEKLGLPPWMLNRRKDPFLGVDRHLITSDLLITVRNDIEFMKKIKSYKGVRHMLG 124          

HSP 2 Score: 22.7126 bits (47), Expect = 2.881e-15
Identity = 9/11 (81.82%), Postives = 9/11 (81.82%), Query Frame = 3
Query:  468 GQHTRTTGRRG 500
            GQ TRTTGR G
Sbjct:  129 GQRTRTTGRTG 139          
The following BLAST results are available for this feature:
BLAST of EY665388 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
RS13_NATPD2.604e-1836.5930S ribosomal protein S13P OS=Natronomonas pharaon... [more]
RS13_SULTO4.053e-1834.4330S ribosomal protein S13P OS=Sulfolobus tokodaii ... [more]
RS13_METBF4.070e-1836.5930S ribosomal protein S13P OS=Methanosarcina barke... [more]
RS13_ARCFU4.357e-1737.5030S ribosomal protein S13P OS=Archaeoglobus fulgid... [more]
RS13_METBU1.243e-1633.6030S ribosomal protein S13P OS=Methanococcoides bur... [more]
RS13_AERPE1.243e-1634.9230S ribosomal protein S13P OS=Aeropyrum pernix GN=... [more]
RS13_METHJ2.437e-1635.7730S ribosomal protein S13P OS=Methanospirillum hun... [more]
RS13_METMP7.090e-1630.5330S ribosomal protein S13P OS=Methanococcus maripa... [more]
RS13_HALMA1.209e-1535.2530S ribosomal protein S13P OS=Haloarcula marismort... [more]
RS13_THEPD2.881e-1533.0630S ribosomal protein S13P OS=Thermofilum pendens ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-007-D01-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665388 ID=EY665388; Name=EY665388; organism=Citrus sinensis; type=EST; length=1022bp
ACTTGCTGCAGCTTCATTTGCACGCCGAAGAGCCTCTCTTCTCTTCATCA
TCAATCCTCACAATCGAAAATGTCTCTGGTGGCGAACGAAGATTTTCAGC
ACATTTTGCGTGTGCTGAACACTAACGTCGACGGGAAGCAGAAGATTATG
TTTGCTCTTACTTCAATTAAGGGTATTGGAAGGCGACTGGCTAACATCGT
TTGCAAGAAAGCTGATGTTGACATGAACAAGAGGGCCGGTGAACTATCTG
CTGCTGAACTTGACAATCTCATGGTCGTTGTTGCAAATCCCCGACAGTTT
AAAATCCCTGATTGGTTCTTGAACAGACAGAAGGATTACAAAGATGGAAA
GTATTCTCAGGTTGTATCCAATGCACTGGACATGAAGTTGAGAGATGATT
TGGAGCGTCTGGAAAAGATCAGGAACCACCGTGGTCTCAGGCACTACTGG
GGTCCTTCGTGTCCGTGGGACAACACACCAGGACCACGGGTCGTCGTGGG
AAAGGAATGTTGGGGTCCTCCCAAAAACCGTTGAACCTGTCCCGTAATAA
ATGGGTTTAGAAAAATACTAAAAACCAAGGTTCAAGAAAAAAATTTGGAA
ATGGCTATTGCTAAAATTTTTCGAAACCGAAAAAAGTGGAATTATTTTTT
CTTTCATAAGACAGGGGGATTTAGCGAGTAAGAAAGGGAGAGGGCCTAAA
TACAAACGATGATGGCGACGAGGGAGAGAGAGTAAGCGAGAACGACAGGC
CGGGGACGCACAAAAGAGAAAAACGAGAGAGAGAACAAAAAGGGAGGGGG
GGCGGGCCAAAAAAGAAGCCTACCAGACACACAAGGAACGCCAATCGACG
TGAACTAAAAAAAGGCAGAAAAGAGACATAACAGAGAGAGAAACAGGCAA
ACAAACCACACGGCCCCAAAGCCAGGAAAAATCAACAATAAATAGGAACG
GAACAGACACGAGAAAAGAAGAAACCTAGAGAATCACAGGCGCAGAGCTA
CGACGACAGGGCGGGAGAACTA
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