EY665388

Overview
NameEY665388
Unique NameEY665388
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1022
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665388 vs. ExPASy Swiss-Prot
Match: RS13_METMJ (30S ribosomal protein S13P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rps13p PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.337e-14
Identity = 42/122 (34.43%), Postives = 69/122 (56.56%), Query Frame = 1
Query:   88 EDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLEKIRNHRGLRHYWG 453
            E+ ++ +RV NT++DG + +  ALT IKGIG   +  +   A VD +   G+L    +  +   V    + ++PDW +NRQKD   G+   ++   L M   DD+ R+ K+R++RG+RH  G
Sbjct:    4 EEIKYFVRVRNTDLDGTKAVHIALTGIKGIGPHTSRTITALAAVDPHAILGKLDDESVGRIANAVDTYTE-QVPDWMVNRQKDVYTGEVRHLLGTDLTMMNDDDVNRMRKMRSYRGIRHETG 124          
BLAST of EY665388 vs. ExPASy Swiss-Prot
Match: RS13_PYRIL (30S ribosomal protein S13P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rps13p PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 5.081e-14
Identity = 38/123 (30.89%), Postives = 76/123 (61.79%), Query Frame = 1
Query:   85 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLEKIRNHRGLRHYWG 453
            +++ + I+R+ +T++DG +++ ++LT I+GIG   A  +C+K  +D +   G LS  +++ L   V N  +   P WFLNR+KD + GK   ++   L +  + D++ ++K+++ +G+RH  G
Sbjct:    2 SQEIRAIVRIGDTDLDGNKQVAYSLTKIRGIGIATAYAICRKLGIDPHAILGALSEEQINKLDWAVRNLHEL-APAWFLNRRKDPETGKDLHLIGAELVLAAKRDVDLMKKLKSWKGVRHSLG 123          
BLAST of EY665388 vs. ExPASy Swiss-Prot
Match: RS13_HALWD (30S ribosomal protein S13P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rps13p PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.931e-13
Identity = 41/123 (33.33%), Postives = 69/123 (56.10%), Query Frame = 1
Query:   85 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLEKIRNHRGLRHYWG 453
            ++D Q+ +R+  T++DG + +  +LT +KGIG+R A I+   A VD +   G L   E+D++   V N     IP W  NR++D+  G         L+ K R D+ R++ I +++G+RH  G
Sbjct:   15 DDDLQYFVRIGTTDLDGTKAVERSLTDMKGIGKRTARIITDVASVDRHATFGLLEEDEIDSITDAVEN-LDDHIPGWMTNRREDFFSGDTDHKTGADLEEKRRHDVNRMKMIDSYKGVRHKRG 136          
BLAST of EY665388 vs. ExPASy Swiss-Prot
Match: RS13_CENSY (30S ribosomal protein S13P OS=Cenarchaeum symbiosum GN=rps13p PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 5.618e-13
Identity = 34/122 (27.87%), Postives = 70/122 (57.38%), Query Frame = 1
Query:   88 EDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLEKIRNHRGLRHYWG 453
            ++++HI+R+L  ++ G++K +  L  I+GIG   A  +     +D N   G L+  ++ ++  ++ +P     P WFLNR+KD + G+   + ++ ++  +R+D+ER     + +G RH +G
Sbjct:   49 QEYKHIVRILGNDLPGEKKAVVGLRQIRGIGYGFATAILDVLKIDNNSNIGYLTDEQVASIEKLLQDPAGAGFPTWFLNRRKDLETGEDRHIFTSDIEFTVRNDVERERVSGSWKGYRHMFG 170          
BLAST of EY665388 vs. ExPASy Swiss-Prot
Match: RS13_PYRCJ (30S ribosomal protein S13P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rps13p PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 7.337e-13
Identity = 36/122 (29.51%), Postives = 73/122 (59.84%), Query Frame = 1
Query:   88 EDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLEKIRNHRGLRHYWG 453
            ++ + I+R+ +T++DG + + +AL  I+GIG   A  +C+K  +D +   G L   +++ L   V N  +   P WFLNR+KD + G+   ++ + L +  + D++ ++K+++ +G+RH  G
Sbjct:    3 QEIRAIVRIGDTDLDGNKTVAYALAKIRGIGIATAYAICRKLGIDPHATLGLLPEDQINKLDWAVRNLHEL-APAWFLNRRKDPETGRDLHLIGSELVLAAKRDVDLMKKLKSWKGIRHSLG 123          
BLAST of EY665388 vs. ExPASy Swiss-Prot
Match: RS13_METLZ (30S ribosomal protein S13P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rps13p PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 7.337e-13
Identity = 40/124 (32.26%), Postives = 68/124 (54.84%), Query Frame = 1
Query:   76 LVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNL-MVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLEKIRNHRGLRH 444
            +V   + ++ +R++NT++DG Q +  ALT IKGIG   A I+ ++A VD     G L   ++  +   V A P    +P W +NR  D   G+   +  + L +   DD+  ++K+R +RG+RH
Sbjct:    1 MVEESELKYFVRIINTDLDGTQPVQLALTGIKGIGLHAALIIARRAGVDTRATMGLLGDEDVAAIEEQVKAYPA--SVPKWMVNRPVDVYSGEPKHLYGSDLSLAKEDDINLMKKMRCYRGIRH 122          
BLAST of EY665388 vs. ExPASy Swiss-Prot
Match: RS13_PYRAE (30S ribosomal protein S13P OS=Pyrobaculum aerophilum GN=rps13p PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 2.135e-12
Identity = 36/123 (29.27%), Postives = 74/123 (60.16%), Query Frame = 1
Query:   85 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLEKIRNHRGLRHYWG 453
            +++ + I+R+ +T++DG +++ +AL  I+GIG   A  +C K  +D +   G L   +++ L   V N  +   P WFLNR+KD + G+   ++ + L +  + D++ ++K+++ +G+RH  G
Sbjct:    2 SQEIRAIVRIGDTDLDGNKQVAYALAKIRGIGIASAYAICWKLGIDPHAILGALPEDQINKLDWAVRNLHEL-APAWFLNRRKDPETGRDLHLIGSELVLAAKRDVDLMKKLKSWKGVRHSLG 123          
BLAST of EY665388 vs. ExPASy Swiss-Prot
Match: RS13_HALSA (30S ribosomal protein S13P OS=Halobacterium salinarium GN=rps13p PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 2.135e-12
Identity = 37/123 (30.08%), Postives = 67/123 (54.47%), Query Frame = 1
Query:   85 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLEKIRNHRGLRHYWG 453
            +ED Q+ +R+  T++DG + +  AL  + G+GRR+A IV  +A VD     G L    ++++   V +  +   P W  NRQ D+  G+   +    +++    D+ R+  IR+++G+RH  G
Sbjct:   10 DEDIQYFVRIGQTDLDGTKTVERALAELGGVGRRVARIVADEAGVDRTATMGGLEDDAIESVTDAVDSFTE-HAPAWLANRQNDFYTGENQHITGTDVELTRDQDINRMRMIRSYKGIRHERG 131          
BLAST of EY665388 vs. ExPASy Swiss-Prot
Match: RS13_PYRAR (30S ribosomal protein S13P OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rps13p PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.788e-12
Identity = 36/123 (29.27%), Postives = 74/123 (60.16%), Query Frame = 1
Query:   85 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLEKIRNHRGLRHYWG 453
            +++ + I+RV +T+++G +++ +AL  I+GIG   A  +C K  +D +   G L   +++ L   V N  +   P WFLNR+KD + G+   ++ + L +  + D++ ++K+++ +G+RH  G
Sbjct:    2 SQELRAIVRVGDTDLEGNKQVAYALAKIRGIGIASAYAICWKLGIDPHAVLGALPEEQINKLDWAVRNLHEVA-PAWFLNRRKDPETGRDMHLIGSELVLAAKRDVDLMKKLKSWKGIRHSLG 123          
BLAST of EY665388 vs. ExPASy Swiss-Prot
Match: RS13_NANEQ (30S ribosomal protein S13P OS=Nanoarchaeum equitans GN=rps13p PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.807e-11
Identity = 36/117 (30.77%), Postives = 62/117 (52.99%), Query Frame = 1
Query:  103 ILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLEKIRNHRGLRHYWG 453
            I+ + + ++DG + I   L  + G+    A+ VC    +D  ++ G LS  EL+ L   + NP ++ IP W  NR++D + GK   +V N   + +  D++R  +I + RG RH  G
Sbjct:   13 IVHIADVDLDGHKPIYVELRKVVGVNWMFAHAVCAALGIDKWRKIGSLSDEELEKLEDALRNPWKYGIPSWLYNRRRDPETGKDLHLVGNDYKITMEFDIKREMQINSWRGYRHREG 129          
The following BLAST results are available for this feature:
BLAST of EY665388 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
RS13_METMJ1.337e-1434.4330S ribosomal protein S13P OS=Methanoculleus maris... [more]
RS13_PYRIL5.081e-1430.8930S ribosomal protein S13P OS=Pyrobaculum islandic... [more]
RS13_HALWD1.931e-1333.3330S ribosomal protein S13P OS=Haloquadratum walsby... [more]
RS13_CENSY5.618e-1327.8730S ribosomal protein S13P OS=Cenarchaeum symbiosu... [more]
RS13_PYRCJ7.337e-1329.5130S ribosomal protein S13P OS=Pyrobaculum calidifo... [more]
RS13_METLZ7.337e-1332.2630S ribosomal protein S13P OS=Methanocorpusculum l... [more]
RS13_PYRAE2.135e-1229.2730S ribosomal protein S13P OS=Pyrobaculum aerophil... [more]
RS13_HALSA2.135e-1230.0830S ribosomal protein S13P OS=Halobacterium salina... [more]
RS13_PYRAR2.788e-1229.2730S ribosomal protein S13P OS=Pyrobaculum arsenati... [more]
RS13_NANEQ1.807e-1130.7730S ribosomal protein S13P OS=Nanoarchaeum equitan... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-007-D01-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665388 ID=EY665388; Name=EY665388; organism=Citrus sinensis; type=EST; length=1022bp
ACTTGCTGCAGCTTCATTTGCACGCCGAAGAGCCTCTCTTCTCTTCATCA
TCAATCCTCACAATCGAAAATGTCTCTGGTGGCGAACGAAGATTTTCAGC
ACATTTTGCGTGTGCTGAACACTAACGTCGACGGGAAGCAGAAGATTATG
TTTGCTCTTACTTCAATTAAGGGTATTGGAAGGCGACTGGCTAACATCGT
TTGCAAGAAAGCTGATGTTGACATGAACAAGAGGGCCGGTGAACTATCTG
CTGCTGAACTTGACAATCTCATGGTCGTTGTTGCAAATCCCCGACAGTTT
AAAATCCCTGATTGGTTCTTGAACAGACAGAAGGATTACAAAGATGGAAA
GTATTCTCAGGTTGTATCCAATGCACTGGACATGAAGTTGAGAGATGATT
TGGAGCGTCTGGAAAAGATCAGGAACCACCGTGGTCTCAGGCACTACTGG
GGTCCTTCGTGTCCGTGGGACAACACACCAGGACCACGGGTCGTCGTGGG
AAAGGAATGTTGGGGTCCTCCCAAAAACCGTTGAACCTGTCCCGTAATAA
ATGGGTTTAGAAAAATACTAAAAACCAAGGTTCAAGAAAAAAATTTGGAA
ATGGCTATTGCTAAAATTTTTCGAAACCGAAAAAAGTGGAATTATTTTTT
CTTTCATAAGACAGGGGGATTTAGCGAGTAAGAAAGGGAGAGGGCCTAAA
TACAAACGATGATGGCGACGAGGGAGAGAGAGTAAGCGAGAACGACAGGC
CGGGGACGCACAAAAGAGAAAAACGAGAGAGAGAACAAAAAGGGAGGGGG
GGCGGGCCAAAAAAGAAGCCTACCAGACACACAAGGAACGCCAATCGACG
TGAACTAAAAAAAGGCAGAAAAGAGACATAACAGAGAGAGAAACAGGCAA
ACAAACCACACGGCCCCAAAGCCAGGAAAAATCAACAATAAATAGGAACG
GAACAGACACGAGAAAAGAAGAAACCTAGAGAATCACAGGCGCAGAGCTA
CGACGACAGGGCGGGAGAACTA
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