EY665388
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY665388 vs. ExPASy Swiss-Prot
Match: RS13_METMJ (30S ribosomal protein S13P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rps13p PE=3 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 1.337e-14 Identity = 42/122 (34.43%), Postives = 69/122 (56.56%), Query Frame = 1 Query: 88 EDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLEKIRNHRGLRHYWG 453 E+ ++ +RV NT++DG + + ALT IKGIG + + A VD + G+L + + V + ++PDW +NRQKD G+ ++ L M DD+ R+ K+R++RG+RH G Sbjct: 4 EEIKYFVRVRNTDLDGTKAVHIALTGIKGIGPHTSRTITALAAVDPHAILGKLDDESVGRIANAVDTYTE-QVPDWMVNRQKDVYTGEVRHLLGTDLTMMNDDDVNRMRKMRSYRGIRHETG 124
BLAST of EY665388 vs. ExPASy Swiss-Prot
Match: RS13_PYRIL (30S ribosomal protein S13P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rps13p PE=3 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 5.081e-14 Identity = 38/123 (30.89%), Postives = 76/123 (61.79%), Query Frame = 1 Query: 85 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLEKIRNHRGLRHYWG 453 +++ + I+R+ +T++DG +++ ++LT I+GIG A +C+K +D + G LS +++ L V N + P WFLNR+KD + GK ++ L + + D++ ++K+++ +G+RH G Sbjct: 2 SQEIRAIVRIGDTDLDGNKQVAYSLTKIRGIGIATAYAICRKLGIDPHAILGALSEEQINKLDWAVRNLHEL-APAWFLNRRKDPETGKDLHLIGAELVLAAKRDVDLMKKLKSWKGVRHSLG 123
BLAST of EY665388 vs. ExPASy Swiss-Prot
Match: RS13_HALWD (30S ribosomal protein S13P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rps13p PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 1.931e-13 Identity = 41/123 (33.33%), Postives = 69/123 (56.10%), Query Frame = 1 Query: 85 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLEKIRNHRGLRHYWG 453 ++D Q+ +R+ T++DG + + +LT +KGIG+R A I+ A VD + G L E+D++ V N IP W NR++D+ G L+ K R D+ R++ I +++G+RH G Sbjct: 15 DDDLQYFVRIGTTDLDGTKAVERSLTDMKGIGKRTARIITDVASVDRHATFGLLEEDEIDSITDAVEN-LDDHIPGWMTNRREDFFSGDTDHKTGADLEEKRRHDVNRMKMIDSYKGVRHKRG 136
BLAST of EY665388 vs. ExPASy Swiss-Prot
Match: RS13_CENSY (30S ribosomal protein S13P OS=Cenarchaeum symbiosum GN=rps13p PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 5.618e-13 Identity = 34/122 (27.87%), Postives = 70/122 (57.38%), Query Frame = 1 Query: 88 EDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLEKIRNHRGLRHYWG 453 ++++HI+R+L ++ G++K + L I+GIG A + +D N G L+ ++ ++ ++ +P P WFLNR+KD + G+ + ++ ++ +R+D+ER + +G RH +G Sbjct: 49 QEYKHIVRILGNDLPGEKKAVVGLRQIRGIGYGFATAILDVLKIDNNSNIGYLTDEQVASIEKLLQDPAGAGFPTWFLNRRKDLETGEDRHIFTSDIEFTVRNDVERERVSGSWKGYRHMFG 170
BLAST of EY665388 vs. ExPASy Swiss-Prot
Match: RS13_PYRCJ (30S ribosomal protein S13P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rps13p PE=3 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 7.337e-13 Identity = 36/122 (29.51%), Postives = 73/122 (59.84%), Query Frame = 1 Query: 88 EDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLEKIRNHRGLRHYWG 453 ++ + I+R+ +T++DG + + +AL I+GIG A +C+K +D + G L +++ L V N + P WFLNR+KD + G+ ++ + L + + D++ ++K+++ +G+RH G Sbjct: 3 QEIRAIVRIGDTDLDGNKTVAYALAKIRGIGIATAYAICRKLGIDPHATLGLLPEDQINKLDWAVRNLHEL-APAWFLNRRKDPETGRDLHLIGSELVLAAKRDVDLMKKLKSWKGIRHSLG 123
BLAST of EY665388 vs. ExPASy Swiss-Prot
Match: RS13_METLZ (30S ribosomal protein S13P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rps13p PE=3 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 7.337e-13 Identity = 40/124 (32.26%), Postives = 68/124 (54.84%), Query Frame = 1 Query: 76 LVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNL-MVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLEKIRNHRGLRH 444 +V + ++ +R++NT++DG Q + ALT IKGIG A I+ ++A VD G L ++ + V A P +P W +NR D G+ + + L + DD+ ++K+R +RG+RH Sbjct: 1 MVEESELKYFVRIINTDLDGTQPVQLALTGIKGIGLHAALIIARRAGVDTRATMGLLGDEDVAAIEEQVKAYPA--SVPKWMVNRPVDVYSGEPKHLYGSDLSLAKEDDINLMKKMRCYRGIRH 122
BLAST of EY665388 vs. ExPASy Swiss-Prot
Match: RS13_PYRAE (30S ribosomal protein S13P OS=Pyrobaculum aerophilum GN=rps13p PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 2.135e-12 Identity = 36/123 (29.27%), Postives = 74/123 (60.16%), Query Frame = 1 Query: 85 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLEKIRNHRGLRHYWG 453 +++ + I+R+ +T++DG +++ +AL I+GIG A +C K +D + G L +++ L V N + P WFLNR+KD + G+ ++ + L + + D++ ++K+++ +G+RH G Sbjct: 2 SQEIRAIVRIGDTDLDGNKQVAYALAKIRGIGIASAYAICWKLGIDPHAILGALPEDQINKLDWAVRNLHEL-APAWFLNRRKDPETGRDLHLIGSELVLAAKRDVDLMKKLKSWKGVRHSLG 123
BLAST of EY665388 vs. ExPASy Swiss-Prot
Match: RS13_HALSA (30S ribosomal protein S13P OS=Halobacterium salinarium GN=rps13p PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 2.135e-12 Identity = 37/123 (30.08%), Postives = 67/123 (54.47%), Query Frame = 1 Query: 85 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLEKIRNHRGLRHYWG 453 +ED Q+ +R+ T++DG + + AL + G+GRR+A IV +A VD G L ++++ V + + P W NRQ D+ G+ + +++ D+ R+ IR+++G+RH G Sbjct: 10 DEDIQYFVRIGQTDLDGTKTVERALAELGGVGRRVARIVADEAGVDRTATMGGLEDDAIESVTDAVDSFTE-HAPAWLANRQNDFYTGENQHITGTDVELTRDQDINRMRMIRSYKGIRHERG 131
BLAST of EY665388 vs. ExPASy Swiss-Prot
Match: RS13_PYRAR (30S ribosomal protein S13P OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rps13p PE=3 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 2.788e-12 Identity = 36/123 (29.27%), Postives = 74/123 (60.16%), Query Frame = 1 Query: 85 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLEKIRNHRGLRHYWG 453 +++ + I+RV +T+++G +++ +AL I+GIG A +C K +D + G L +++ L V N + P WFLNR+KD + G+ ++ + L + + D++ ++K+++ +G+RH G Sbjct: 2 SQELRAIVRVGDTDLEGNKQVAYALAKIRGIGIASAYAICWKLGIDPHAVLGALPEEQINKLDWAVRNLHEVA-PAWFLNRRKDPETGRDMHLIGSELVLAAKRDVDLMKKLKSWKGIRHSLG 123
BLAST of EY665388 vs. ExPASy Swiss-Prot
Match: RS13_NANEQ (30S ribosomal protein S13P OS=Nanoarchaeum equitans GN=rps13p PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.807e-11 Identity = 36/117 (30.77%), Postives = 62/117 (52.99%), Query Frame = 1 Query: 103 ILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLEKIRNHRGLRHYWG 453 I+ + + ++DG + I L + G+ A+ VC +D ++ G LS EL+ L + NP ++ IP W NR++D + GK +V N + + D++R +I + RG RH G Sbjct: 13 IVHIADVDLDGHKPIYVELRKVVGVNWMFAHAVCAALGIDKWRKIGSLSDEELEKLEDALRNPWKYGIPSWLYNRRRDPETGKDLHLVGNDYKITMEFDIKREMQINSWRGYRHREG 129 The following BLAST results are available for this feature:
BLAST of EY665388 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 60
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Sequences
The
following sequences are available for this feature:
EST sequence >EY665388 ID=EY665388; Name=EY665388; organism=Citrus sinensis; type=EST; length=1022bpback to top |