EY665385

Overview
NameEY665385
Unique NameEY665385
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1051
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY665385 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.345e-17
Identity = 47/97 (48.45%), Postives = 59/97 (60.82%), Query Frame = 3 
Query:  318 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLNKKPDDFSKYQAYELISAKWAMLGAAGFSIPETFNKFGATCGPEAVWFKNWEALLSEG 608
            WYGPDR ++L        E P YLTGE PGDYG+D  GL+  P++F+K +  E+I  +WAMLGA G   PE   + G   G EAVWFK    + SEG
Sbjct:   58 WYGPDRVLYLGPF---SGEPPSYLTGEFPGDYGWDTAGLSADPENFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEG 150
[Close]
BLAST of EY665385 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.756e-17
Identity = 47/97 (48.45%), Postives = 59/97 (60.82%), Query Frame = 3 
Query:  318 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLNKKPDDFSKYQAYELISAKWAMLGAAGFSIPETFNKFGATCGPEAVWFKNWEALLSEG 608
            WYGPDR ++L        E P YLTGE PGDYG+D  GL+  P+ F+K +  E+I ++WAMLGA G   PE   + G   G EAVWFK    + SEG
Sbjct:   62 WYGPDRVLYLGPF---SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEG 154
[Close]
BLAST of EY665385 vs. ExPASy Swiss-Prot
Match: CB2A_PYRPY (Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus pyrifolia PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 2.293e-17
Identity = 47/97 (48.45%), Postives = 59/97 (60.82%), Query Frame = 3 
Query:  318 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLNKKPDDFSKYQAYELISAKWAMLGAAGFSIPETFNKFGATCGPEAVWFKNWEALLSEG 608
            WYGPDR ++L        E P YLTGE PGDYG+D  GL+  P+ F+K +  E+I ++WAMLGA G   PE   + G   G EAVWFK    + SEG
Sbjct:   62 WYGPDRVMYLGPF---SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEG 154
[Close]
BLAST of EY665385 vs. ExPASy Swiss-Prot
Match: CB23_SOYBN (Chlorophyll a-b binding protein 3, chloroplastic OS=Glycine max GN=CAB3 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 2.293e-17
Identity = 47/97 (48.45%), Postives = 59/97 (60.82%), Query Frame = 3 
Query:  318 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLNKKPDDFSKYQAYELISAKWAMLGAAGFSIPETFNKFGATCGPEAVWFKNWEALLSEG 608
            WYGPDR  +L        E P YLTGE PGDYG+D  GL+  P+ F+K +  E+I ++WAMLGA G   PE  ++ G   G EAVWFK    + SEG
Sbjct:   47 WYGPDRVKYLGPF---SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEG 139
[Close]
BLAST of EY665385 vs. ExPASy Swiss-Prot
Match: CB21_MAIZE (Chlorophyll a-b binding protein 1, chloroplastic OS=Zea mays GN=CAB1 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 2.293e-17
Identity = 47/97 (48.45%), Postives = 59/97 (60.82%), Query Frame = 3 
Query:  318 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLNKKPDDFSKYQAYELISAKWAMLGAAGFSIPETFNKFGATCGPEAVWFKNWEALLSEG 608
            WYGPDR  +L        E P YLTGE PGDYG+D  GL+  P+ F+K +  E+I ++WAMLGA G   PE  ++ G   G EAVWFK    + SEG
Sbjct:   46 WYGPDRVKYLGPF---SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEG 138
[Close]
BLAST of EY665385 vs. ExPASy Swiss-Prot
Match: CB21_CUCSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 2.293e-17
Identity = 47/97 (48.45%), Postives = 59/97 (60.82%), Query Frame = 3 
Query:  318 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLNKKPDDFSKYQAYELISAKWAMLGAAGFSIPETFNKFGATCGPEAVWFKNWEALLSEG 608
            WYGPDR  +L        E P YLTGE PGDYG+D  GL+  P+ F+K +  E+I ++WAMLGA G   PE  ++ G   G EAVWFK    + SEG
Sbjct:   39 WYGPDRVKYLGPF---SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEG 131
[Close]
BLAST of EY665385 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.995e-17
Identity = 44/98 (44.90%), Postives = 57/98 (58.16%), Query Frame = 3 
Query:  315 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLNKKPDDFSKYQAYELISAKWAMLGAAGFSIPETFNKFGATCGPEAVWFKNWEALLSEG 608
            +WYGPDR  +L       +  P YLTGE PGDYG+D  GL+  P+ F KY+  E+I A+WA+LGA G   PE  + +      E VWFK    + SEG
Sbjct:   38 EWYGPDRAKWLGPF---STNTPAYLTGEFPGDYGWDTAGLSADPETFKKYRELEVIHARWALLGALGILTPELLSTYAGVKFGEPVWFKAGAQIFSEG 132
[Close]
BLAST of EY665385 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.995e-17
Identity = 46/97 (47.42%), Postives = 59/97 (60.82%), Query Frame = 3 
Query:  318 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLNKKPDDFSKYQAYELISAKWAMLGAAGFSIPETFNKFGATCGPEAVWFKNWEALLSEG 608
            WYGPDR  +L        + P YLTGE PGDYG+D  GL+  P+ F++ +  E+I ++WAMLGA G   PE  +K G   G EAVWFK    + SEG
Sbjct:   47 WYGPDRPKYLGPF---SEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEG 139
[Close]
BLAST of EY665385 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.995e-17
Identity = 46/97 (47.42%), Postives = 59/97 (60.82%), Query Frame = 3 
Query:  318 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLNKKPDDFSKYQAYELISAKWAMLGAAGFSIPETFNKFGATCGPEAVWFKNWEALLSEG 608
            WYGPDR  +L        + P YLTGE PGDYG+D  GL+  P+ F++ +  E+I ++WAMLGA G   PE  +K G   G EAVWFK    + SEG
Sbjct:   47 WYGPDRPKYLGPF---SEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEG 139
[Close]
BLAST of EY665385 vs. ExPASy Swiss-Prot
Match: CB23_APIGR (Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens GN=LHC0 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.995e-17
Identity = 47/97 (48.45%), Postives = 58/97 (59.79%), Query Frame = 3 
Query:  318 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLNKKPDDFSKYQAYELISAKWAMLGAAGFSIPETFNKFGATCGPEAVWFKNWEALLSEG 608
            WYGPDR  +L        E P YLTGE PGDYG+D  GL+  P+ F+K +  E+I ++WAMLGA G   PE   + G   G EAVWFK    + SEG
Sbjct:   48 WYGPDRVKYLGPF---SGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEG 140
The following BLAST results are available for this feature:
BLAST of EY665385 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
CB2B_PINSY1.345e-1748.45Chlorophyll a-b binding protein type 2 member 1B, ... [more]
CB2A_PINSY1.756e-1748.45Chlorophyll a-b binding protein type 2 member 1A, ... [more]
CB2A_PYRPY2.293e-1748.45Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB23_SOYBN2.293e-1748.45Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB21_MAIZE2.293e-1748.45Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB21_CUCSA2.293e-1748.45Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_CHLMO2.995e-1744.90Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB23_ORYSJ2.995e-1747.42Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_ORYSI2.995e-1747.42Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_APIGR2.995e-1748.45Chlorophyll a-b binding protein, chloroplastic OS=... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-007-C10-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665385 ID=EY665385; Name=EY665385; organism=Citrus sinensis; type=EST; length=1051bp
TTTTTTTTTTCCTTTCGCACCGCAGTACGGTCGGTATTCCGGGTCGACCC
ACGCGTCCGCTAACACAAAGAAGCAGCAGCAGCCACACTCTGAAGATGGC
TTCATTGGCAGCATCGTCCACTCCTGCTGCCTCCATTGGAGTTAAGGAGA
TGCTTGGCAACCCTCTCAATGTCAGCAGTGCTGTTAGGACTTCAGCTCCA
GGTGCATCAAACCCTTCTACTTTCAAGCCCGTTGCTCTCTTCTCCAAGAA
GAAAGCCGCCCCTCCTGCCAAGTCTAAGCCCGTCGCCGTCTCCCCCGTTA
ACGAAGAGCTCGCCAAGTGGTATGGTCCTGACCGAAGAATTTTCTTGCCC
GAGGGTCTCTTGGACAGATCTGAGATCCCTGAGTACTTGACCGGAGAAGT
TCCCGGAGACTATGGTTACGATCCTTTTGGTCTCAACAAGAAACCAGACG
ACTTCAGCAAATATCAGGCATATGAATTGATTTCTGCCAAATGGGCCATG
CTTGGTGCTGCTGGTTTCTCCATTCCGGAAACCTTTAACAAGTTTGGGGC
TACCTGTGGTCCTGAAGCTGTCTGGTTCAAGAACTGGGAAGCTCTACTTT
CTGAAGGAAAACCATTGGAACTACTTTACGAAAAAAAAATCCCATTCCAC
CCTTGTTTTTGCGGACATTGGTAAAAAATAGTTCTTGAAAGGGGAGGGAT
GAATATAATAGAAACCCCCAAACGGGTTGGAAATTTGGGAGGAAAAAGCC
CTCACCCCCGAGGGGCACAATAGAACACAAATGGGATATAGAAAAAAGAA
CTCAGGAACAATTTTAGAATGAGCTAAAAAAGCAAGAAAAAAAAAAAAAA
GAGAGGAAAATGCGAAGTTTTTGGCGAGTAATGGAAAATAATCATTCACC
CAAAGATATAAAATAAAAGATAAAATAACAGGAATAAATATAAAAAAAAA
AAAAGACATAAAATAAAAAAACCTCAGAAGTAGAACATTTAATGTGAAAA
AACATCAAGCGATGTACTAAAAAGAATTGGAAGTGGATAAGCAAAAAATG
A
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