EY665385

Overview
NameEY665385
Unique NameEY665385
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1051
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY665385 vs. ExPASy Swiss-Prot
Match: CB24_TOBAC (Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum GN=CAB40 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 5.109e-17
Identity = 47/97 (48.45%), Postives = 57/97 (58.76%), Query Frame = 3 
Query:  318 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLNKKPDDFSKYQAYELISAKWAMLGAAGFSIPETFNKFGATCGPEAVWFKNWEALLSEG 608
            WYGPDR  +L        E P YLTGE PGDYG+D  GL+  P+ F+K +  E+I  +WAMLGA G   PE   + G   G EAVWFK    + SEG
Sbjct:   51 WYGPDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEG 143
[Close]
BLAST of EY665385 vs. ExPASy Swiss-Prot
Match: CB22_TOBAC (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 5.109e-17
Identity = 47/97 (48.45%), Postives = 57/97 (58.76%), Query Frame = 3 
Query:  318 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLNKKPDDFSKYQAYELISAKWAMLGAAGFSIPETFNKFGATCGPEAVWFKNWEALLSEG 608
            WYGPDR  +L        E P YLTGE PGDYG+D  GL+  P+ F+K +  E+I  +WAMLGA G   PE   + G   G EAVWFK    + SEG
Sbjct:   49 WYGPDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEG 141
[Close]
BLAST of EY665385 vs. ExPASy Swiss-Prot
Match: CB22_ORYSJ (Chlorophyll a-b binding protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB2R PE=2 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 5.109e-17
Identity = 48/97 (49.48%), Postives = 60/97 (61.86%), Query Frame = 3 
Query:  318 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLNKKPDDFSKYQAYELISAKWAMLGAAGFSIPETFNKFGATCGPEAVWFKNWEALLSEG 608
            WYG DR ++L  G L   E P YLTGE PGDYG+D  GL+  P+ F+K +  E+I ++WAMLGA G   PE   + G   G EAVWFK    + SEG
Sbjct:   45 WYGADRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEG 137
[Close]
BLAST of EY665385 vs. ExPASy Swiss-Prot
Match: CB21_TOBAC (Chlorophyll a-b binding protein 16, chloroplastic OS=Nicotiana tabacum GN=CAB16 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 5.109e-17
Identity = 47/97 (48.45%), Postives = 57/97 (58.76%), Query Frame = 3 
Query:  318 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLNKKPDDFSKYQAYELISAKWAMLGAAGFSIPETFNKFGATCGPEAVWFKNWEALLSEG 608
            WYGPDR  +L        E P YLTGE PGDYG+D  GL+  P+ F+K +  E+I  +WAMLGA G   PE   + G   G EAVWFK    + SEG
Sbjct:   50 WYGPDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEG 142
[Close]
BLAST of EY665385 vs. ExPASy Swiss-Prot
Match: CB21_ORYSJ (Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB1R PE=2 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 5.109e-17
Identity = 48/97 (49.48%), Postives = 60/97 (61.86%), Query Frame = 3 
Query:  318 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLNKKPDDFSKYQAYELISAKWAMLGAAGFSIPETFNKFGATCGPEAVWFKNWEALLSEG 608
            WYG DR ++L  G L   E P YLTGE PGDYG+D  GL+  P+ F+K +  E+I ++WAMLGA G   PE   + G   G EAVWFK    + SEG
Sbjct:   49 WYGADRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEG 141
[Close]
BLAST of EY665385 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 5.109e-17
Identity = 47/97 (48.45%), Postives = 58/97 (59.79%), Query Frame = 3 
Query:  318 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLNKKPDDFSKYQAYELISAKWAMLGAAGFSIPETFNKFGATCGPEAVWFKNWEALLSEG 608
            WYG DR  FL        + P YLTGE PGDYG+D  GL+  P+ F+K +  E+I ++WAMLGA G   PE  +K G   G EAVWFK    + SEG
Sbjct:   48 WYGADRPKFLGPF---SEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCIFPELLSKNGVQFG-EAVWFKAGAQIFSEG 140
[Close]
BLAST of EY665385 vs. ExPASy Swiss-Prot
Match: CB23_PETSP (Chlorophyll a-b binding protein 22R, chloroplastic OS=Petunia sp. GN=CAB22R PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 6.673e-17
Identity = 47/97 (48.45%), Postives = 57/97 (58.76%), Query Frame = 3 
Query:  318 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLNKKPDDFSKYQAYELISAKWAMLGAAGFSIPETFNKFGATCGPEAVWFKNWEALLSEG 608
            WYGPDR  +L        E P YLTGE P DYG+D  GL+  P+ F+K +  E+I  +WAMLGA G   PE F + G   G EAVWFK    + SEG
Sbjct:   51 WYGPDRVKYLGPF---SGEAPSYLTGEFPSDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGIKFG-EAVWFKAGAQIFSEG 143
[Close]
BLAST of EY665385 vs. ExPASy Swiss-Prot
Match: CB21_SILPR (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Silene pratensis PE=2 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 8.715e-17
Identity = 46/97 (47.42%), Postives = 56/97 (57.73%), Query Frame = 3 
Query:  318 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLNKKPDDFSKYQAYELISAKWAMLGAAGFSIPETFNKFGATCGPEAVWFKNWEALLSEG 608
            WYGPDR  +L        + P YLTGE PGDYG+D  GL+  P+ F+K +  E+I  +WAMLGA G   PE   K G   G EAVWFK    +  EG
Sbjct:   48 WYGPDRPKYLGPF---SEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGVKFG-EAVWFKAGSQIFQEG 140
[Close]
BLAST of EY665385 vs. ExPASy Swiss-Prot
Match: CB21_PETSP (Chlorophyll a-b binding protein 13, chloroplastic OS=Petunia sp. GN=CAB13 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.941e-16
Identity = 46/97 (47.42%), Postives = 55/97 (56.70%), Query Frame = 3 
Query:  318 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLNKKPDDFSKYQAYELISAKWAMLGAAGFSIPETFNKFGATCGPEAVWFKNWEALLSEG 608
            WYGPDR  +L        E P YLTGE PGDYG+D  GL+  P  F+K +  E+I  +W MLGA G   PE F + G   G EAVWFK    +  EG
Sbjct:   50 WYGPDRVKYLGPF---SGEAPSYLTGEFPGDYGWDTAGLSADPATFAKNRKLEVIHCRWTMLGALGCVFPELFARNGVKFG-EAVWFKAGSQIFKEG 142
[Close]
BLAST of EY665385 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 2.536e-16
Identity = 45/97 (46.39%), Postives = 57/97 (58.76%), Query Frame = 3 
Query:  318 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLNKKPDDFSKYQAYELISAKWAMLGAAGFSIPETFNKFGATCGPEAVWFKNWEALLSEG 608
            WYG DR  +L        + P YLTGE PGDYG+D  GL+  P+ F++ +  E+I  +WAMLGA G   PE  +K G   G EAVWFK    + SEG
Sbjct:   49 WYGEDRPKYLGPF---SEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFG-EAVWFKAGSQIFSEG 141
The following BLAST results are available for this feature:
BLAST of EY665385 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
CB24_TOBAC5.109e-1748.45Chlorophyll a-b binding protein 40, chloroplastic ... [more]
CB22_TOBAC5.109e-1748.45Chlorophyll a-b binding protein 21, chloroplastic ... [more]
CB22_ORYSJ5.109e-1749.48Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_TOBAC5.109e-1748.45Chlorophyll a-b binding protein 16, chloroplastic ... [more]
CB21_ORYSJ5.109e-1749.48Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB21_LEMGI5.109e-1748.45Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB23_PETSP6.673e-1748.45Chlorophyll a-b binding protein 22R, chloroplastic... [more]
CB21_SILPR8.715e-1747.42Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB21_PETSP1.941e-1647.42Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB24_SOLLC2.536e-1646.39Chlorophyll a-b binding protein 4, chloroplastic O... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-007-C10-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665385 ID=EY665385; Name=EY665385; organism=Citrus sinensis; type=EST; length=1051bp
TTTTTTTTTTCCTTTCGCACCGCAGTACGGTCGGTATTCCGGGTCGACCC
ACGCGTCCGCTAACACAAAGAAGCAGCAGCAGCCACACTCTGAAGATGGC
TTCATTGGCAGCATCGTCCACTCCTGCTGCCTCCATTGGAGTTAAGGAGA
TGCTTGGCAACCCTCTCAATGTCAGCAGTGCTGTTAGGACTTCAGCTCCA
GGTGCATCAAACCCTTCTACTTTCAAGCCCGTTGCTCTCTTCTCCAAGAA
GAAAGCCGCCCCTCCTGCCAAGTCTAAGCCCGTCGCCGTCTCCCCCGTTA
ACGAAGAGCTCGCCAAGTGGTATGGTCCTGACCGAAGAATTTTCTTGCCC
GAGGGTCTCTTGGACAGATCTGAGATCCCTGAGTACTTGACCGGAGAAGT
TCCCGGAGACTATGGTTACGATCCTTTTGGTCTCAACAAGAAACCAGACG
ACTTCAGCAAATATCAGGCATATGAATTGATTTCTGCCAAATGGGCCATG
CTTGGTGCTGCTGGTTTCTCCATTCCGGAAACCTTTAACAAGTTTGGGGC
TACCTGTGGTCCTGAAGCTGTCTGGTTCAAGAACTGGGAAGCTCTACTTT
CTGAAGGAAAACCATTGGAACTACTTTACGAAAAAAAAATCCCATTCCAC
CCTTGTTTTTGCGGACATTGGTAAAAAATAGTTCTTGAAAGGGGAGGGAT
GAATATAATAGAAACCCCCAAACGGGTTGGAAATTTGGGAGGAAAAAGCC
CTCACCCCCGAGGGGCACAATAGAACACAAATGGGATATAGAAAAAAGAA
CTCAGGAACAATTTTAGAATGAGCTAAAAAAGCAAGAAAAAAAAAAAAAA
GAGAGGAAAATGCGAAGTTTTTGGCGAGTAATGGAAAATAATCATTCACC
CAAAGATATAAAATAAAAGATAAAATAACAGGAATAAATATAAAAAAAAA
AAAAGACATAAAATAAAAAAACCTCAGAAGTAGAACATTTAATGTGAAAA
AACATCAAGCGATGTACTAAAAAGAATTGGAAGTGGATAAGCAAAAAATG
A
back to top