EY665385

Overview
NameEY665385
Unique NameEY665385
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1051
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665385 vs. ExPASy Swiss-Prot
Match: CB2_PHYPA (Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.258e-15
Identity = 46/97 (47.42%), Postives = 55/97 (56.70%), Query Frame = 3
Query:  318 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLNKKPDDFSKYQAYELISAKWAMLGAAGFSIPETFNKFGATCGPEAVWFKNWEALLSEG 608
            WYG DR  FL        E P YL GE  GDYG+D  GL+  P+ F++ +  E+I A+WAMLGA G   PE   K G   G EAVWFK    + SEG
Sbjct:   52 WYGADRPKFLGPF---SGETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVKFG-EAVWFKAGAQIFSEG 144          
BLAST of EY665385 vs. ExPASy Swiss-Prot
Match: CB21_SINAL (Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.258e-15
Identity = 45/97 (46.39%), Postives = 56/97 (57.73%), Query Frame = 3
Query:  318 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLNKKPDDFSKYQAYELISAKWAMLGAAGFSIPETFNKFGATCGPEAVWFKNWEALLSEG 608
            WYG DR  +L        E P YLTGE PGDYG+D  GL+  P+ F++ +  E+I  +WAMLGA G   PE   + G   G EAVWFK    + SEG
Sbjct:   49 WYGSDRVKYLGPF---SGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEG 141          
BLAST of EY665385 vs. ExPASy Swiss-Prot
Match: CB22_ARATH (Chlorophyll a-b binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=CAB2A PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.644e-15
Identity = 44/97 (45.36%), Postives = 57/97 (58.76%), Query Frame = 3
Query:  318 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLNKKPDDFSKYQAYELISAKWAMLGAAGFSIPETFNKFGATCGPEAVWFKNWEALLSEG 608
            WYG DR  +L        E P YLTGE PGDYG+D  GL+  P+ F++ +  E+I ++WAMLGA G   PE   + G   G EAVWFK    + S+G
Sbjct:   50 WYGSDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSDG 142          
BLAST of EY665385 vs. ExPASy Swiss-Prot
Match: CB21_ARATH (Chlorophyll a-b binding protein 165/180, chloroplastic OS=Arabidopsis thaliana GN=LHCP-A PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.644e-15
Identity = 44/97 (45.36%), Postives = 57/97 (58.76%), Query Frame = 3
Query:  318 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLNKKPDDFSKYQAYELISAKWAMLGAAGFSIPETFNKFGATCGPEAVWFKNWEALLSEG 608
            WYG DR  +L        E P YLTGE PGDYG+D  GL+  P+ F++ +  E+I ++WAMLGA G   PE   + G   G EAVWFK    + S+G
Sbjct:   50 WYGSDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSDG 142          
BLAST of EY665385 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.817e-14
Identity = 40/79 (50.63%), Postives = 50/79 (63.29%), Query Frame = 3
Query:  372 EIPEYLTGEVPGDYGYDPFGLNKKPDDFSKYQAYELISAKWAMLGAAGFSIPETFNKFGATCGPEAVWFKNWEALLSEG 608
            E P YLTGE PGDYG+D  GL+  P+ F+K +  E+I + WAMLGA G   PE  ++ G   G EAVWFK    + SEG
Sbjct:    5 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSTWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEG 82          
BLAST of EY665385 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.178e-13
Identity = 43/97 (44.33%), Postives = 55/97 (56.70%), Query Frame = 3
Query:  318 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLNKKPDDFSKYQAYELISAKWAMLGAAGFSIPETFNKFGATCGPEAVWFKNWEALLSEG 608
            WYG DR ++L  G L  S  P YLTGE PGDYG+D  GL+  P+ F+K +  E+I  +WA+    G   PE   + G   G E VWFK    + SEG
Sbjct:   48 WYGADRVLYL--GPLSGSP-PSYLTGEFPGDYGWDTEGLSADPETFAKNRELEVIHCRWAIAVGLGCVFPELLARNGVKFG-EGVWFKAGSQIFSEG 140          
BLAST of EY665385 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.456e-11
Identity = 37/79 (46.84%), Postives = 47/79 (59.49%), Query Frame = 3
Query:  372 EIPEYLTGEVPGDYGYDPFGLNKKPDDFSKYQAYELISAKWAMLGAAGFSIPETFNKFGATCGPEAVWFKNWEALLSEG 608
            E P YLTGE PGDYG+D  GL+  P+ F+K +  E+I ++ AM  A G   PE  +  G   G EAVWFK    + SEG
Sbjct:   68 EWPSYLTGEFPGDYGWDTAGLSAYPETFAKNRELEVIHSRCAMSAALGCIFPELLSVMGQGFG-EAVWFKAGAQIFSEG 145          
BLAST of EY665385 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 4.189e-11
Identity = 38/99 (38.38%), Postives = 54/99 (54.55%), Query Frame = 3
Query:  315 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLNKKPDDFSKYQAYELISAKWAMLGAAGFSIPETF-NKFGATCGPEAVWFKNWEALLSEG 608
            ++YGPD       G   + + P   TGE PGDYG+D  GL+  P+ F +Y+  ELI A+  +LGA G   PE   ++ G   G  A+WFK   A+  +G
Sbjct:   56 QFYGPDAT----SGWDLQHQHPRLPTGEFPGDYGWDTAGLSADPETFKRYRELELIHARCGLLGALGMVTPELLADEDGIKFGDAAIWFKAGAAIFQDG 150          
BLAST of EY665385 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 4.189e-11
Identity = 35/84 (41.67%), Postives = 46/84 (54.76%), Query Frame = 3
Query:  327 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLNKKPDDFSKYQAYELISAKWAMLGAAGFSIPETFNKFGATCGPEAVWF 578
            PDR ++ P      S  PE+L G +PGD+G+DP GL   P+        EL+ ++WAMLGAAG  IPE   K G    P   W+
Sbjct:   63 PDRPLWFPG-----STPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGVLNTPS--WY 139          
BLAST of EY665385 vs. ExPASy Swiss-Prot
Match: CB24_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 9.333e-11
Identity = 30/67 (44.78%), Postives = 42/67 (62.69%), Query Frame = 3
Query:  378 PEYLTGEVPGDYGYDPFGLNKKPDDFSKYQAYELISAKWAMLGAAGFSIPETFNKFGATCGPEAVWF 578
            P+YLTG + GD G+DP GL + P++   +   EL++ +WAMLG AG  +PE F K G    PE  W+
Sbjct:   64 PDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINVPE--WY 128          
The following BLAST results are available for this feature:
BLAST of EY665385 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
CB2_PHYPA1.258e-1547.42Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_SINAL1.258e-1546.39Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB22_ARATH1.644e-1545.36Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_ARATH1.644e-1545.36Chlorophyll a-b binding protein 165/180, chloropla... [more]
CB22_CUCSA1.817e-1450.63Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB48_MAIZE1.178e-1344.33Chlorophyll a-b binding protein 48, chloroplastic ... [more]
CB2_MALDO2.456e-1146.84Chlorophyll a-b binding protein AB10, chloroplasti... [more]
CB2_DUNSA4.189e-1138.38Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB12_PETHY4.189e-1141.67Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB24_ARATH9.333e-1144.78Chlorophyll a-b binding protein 4, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-007-C10-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665385 ID=EY665385; Name=EY665385; organism=Citrus sinensis; type=EST; length=1051bp
TTTTTTTTTTCCTTTCGCACCGCAGTACGGTCGGTATTCCGGGTCGACCC
ACGCGTCCGCTAACACAAAGAAGCAGCAGCAGCCACACTCTGAAGATGGC
TTCATTGGCAGCATCGTCCACTCCTGCTGCCTCCATTGGAGTTAAGGAGA
TGCTTGGCAACCCTCTCAATGTCAGCAGTGCTGTTAGGACTTCAGCTCCA
GGTGCATCAAACCCTTCTACTTTCAAGCCCGTTGCTCTCTTCTCCAAGAA
GAAAGCCGCCCCTCCTGCCAAGTCTAAGCCCGTCGCCGTCTCCCCCGTTA
ACGAAGAGCTCGCCAAGTGGTATGGTCCTGACCGAAGAATTTTCTTGCCC
GAGGGTCTCTTGGACAGATCTGAGATCCCTGAGTACTTGACCGGAGAAGT
TCCCGGAGACTATGGTTACGATCCTTTTGGTCTCAACAAGAAACCAGACG
ACTTCAGCAAATATCAGGCATATGAATTGATTTCTGCCAAATGGGCCATG
CTTGGTGCTGCTGGTTTCTCCATTCCGGAAACCTTTAACAAGTTTGGGGC
TACCTGTGGTCCTGAAGCTGTCTGGTTCAAGAACTGGGAAGCTCTACTTT
CTGAAGGAAAACCATTGGAACTACTTTACGAAAAAAAAATCCCATTCCAC
CCTTGTTTTTGCGGACATTGGTAAAAAATAGTTCTTGAAAGGGGAGGGAT
GAATATAATAGAAACCCCCAAACGGGTTGGAAATTTGGGAGGAAAAAGCC
CTCACCCCCGAGGGGCACAATAGAACACAAATGGGATATAGAAAAAAGAA
CTCAGGAACAATTTTAGAATGAGCTAAAAAAGCAAGAAAAAAAAAAAAAA
GAGAGGAAAATGCGAAGTTTTTGGCGAGTAATGGAAAATAATCATTCACC
CAAAGATATAAAATAAAAGATAAAATAACAGGAATAAATATAAAAAAAAA
AAAAGACATAAAATAAAAAAACCTCAGAAGTAGAACATTTAATGTGAAAA
AACATCAAGCGATGTACTAAAAAGAATTGGAAGTGGATAAGCAAAAAATG
A
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