FC871878

Overview
NameFC871878
Unique NameFC871878
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length742
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC871878 vs. ExPASy Swiss-Prot
Match: RL32_YEAST (60S ribosomal protein L32 OS=Saccharomyces cerevisiae GN=RPL32 PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 6.015e-26
Identity = 59/105 (56.19%), Postives = 72/105 (68.57%), Query Frame = 2
Query:    2 SDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARL 316
            SDR   V ENWR+ KGIDS VRR+F+G +  P IGYGS+KKT+   P+G K F+V NV +LE L MH +TY AEIAHN+S K R  I+ RA  L + VTN   RL
Sbjct:   22 SDRYHRVAENWRKQKGIDSVVRRRFRGNISQPKIGYGSNKKTKFLSPSGHKTFLVANVKDLETLTMHTKTYAAEIAHNISAKNRVVILARAKALGIKVTNPKGRL 126          
BLAST of FC871878 vs. ExPASy Swiss-Prot
Match: RL32_CANAL (60S ribosomal protein L32 OS=Candida albicans GN=RPL32 PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.750e-25
Identity = 56/105 (53.33%), Postives = 78/105 (74.29%), Query Frame = 2
Query:    2 SDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARL 316
            SDR   V ENWR+ KGIDS VRR+F+G +  PNIGYGS+KKT+   P G+K ++V NV +L++L++H ++Y AEIA +VS++KR EIV +A +L V VTN   +L
Sbjct:   23 SDRYHRVAENWRKQKGIDSCVRRRFRGTIPQPNIGYGSNKKTKFLNPAGYKVYLVKNVKDLDVLLLHTKSYAAEIASSVSSRKRVEIVAKAKKLGVKVTNPKGKL 127          
BLAST of FC871878 vs. ExPASy Swiss-Prot
Match: RL32_CANGA (60S ribosomal protein L32 OS=Candida glabrata GN=RPL32 PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.935e-24
Identity = 57/105 (54.29%), Postives = 72/105 (68.57%), Query Frame = 2
Query:    2 SDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARL 316
            SDR   V ENWR+ KGIDS VRR+F+G +  P IGYGS+KKT+   P+G K  +V N+ +LE L MH ++Y AEIAHNVS+K R  ++ RA  L V VTN   RL
Sbjct:   23 SDRYHRVSENWRKQKGIDSVVRRRFRGNISEPTIGYGSNKKTKFMSPSGHKVVLVSNLKDLETLTMHTKSYAAEIAHNVSSKNRVTLLARAKALGVKVTNAKGRL 127          
BLAST of FC871878 vs. ExPASy Swiss-Prot
Match: RL32_ENCCU (60S ribosomal protein L32 OS=Encephalitozoon cuniculi GN=RPL32 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.174e-21
Identity = 55/111 (49.55%), Postives = 70/111 (63.06%), Query Frame = 2
Query:    2 SDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQEEE 334
            SDR   VK +WRRP GIDS+VR++ KG   MP+I Y   K+ RH LPNG +K  + N+N+L  L   NR YC EIAH V  +KR  IV RA +L + + N  ARL  + EE
Sbjct:   29 SDRYKRVKPSWRRPHGIDSKVRKRCKGEREMPSIKYKKPKEIRHLLPNGLRKVRIFNINDLTPLTSLNRFYCGEIAHAVGARKRIAIVNRAKELGICLLNGNARLIPEIEE 139          
BLAST of FC871878 vs. ExPASy Swiss-Prot
Match: RL32_PYRFU (50S ribosomal protein L32e OS=Pyrococcus furiosus GN=rpl32e PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.257e-15
Identity = 44/90 (48.89%), Postives = 58/90 (64.44%), Query Frame = 2
Query:   32 WRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTN 301
            WRRPKGIDS++R K KG    P+IG+ S K  R   P+G+++ +VHNV ELE L    +   A IAH V  KKR EI++RA +L + V N
Sbjct:   40 WRRPKGIDSKMRLKLKGKPRSPSIGWSSPKLVRGLHPSGYEEVLVHNVKELEAL--DPKRQAARIAHTVGKKKRIEIIKRAEELGIKVLN 127          
BLAST of FC871878 vs. ExPASy Swiss-Prot
Match: RL32_PYRHO (50S ribosomal protein L32e OS=Pyrococcus horikoshii GN=rpl32e PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.657e-15
Identity = 43/90 (47.78%), Postives = 58/90 (64.44%), Query Frame = 2
Query:   32 WRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTN 301
            WRRPKGIDS++R K KG    P+IG+ S +  R   P+G+++ ++HNV ELE L    R   A IAH V  KKR EI++RA +L + V N
Sbjct:   40 WRRPKGIDSKMRLKLKGKPRSPSIGWSSPRLVRGLHPSGYEEVLIHNVKELERL--DPRRQAARIAHTVGKKKRIEILKRAEELGIKVLN 127          
BLAST of FC871878 vs. ExPASy Swiss-Prot
Match: RL32_PYRAB (50S ribosomal protein L32e OS=Pyrococcus abyssi GN=rpl32e PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.148e-15
Identity = 42/90 (46.67%), Postives = 58/90 (64.44%), Query Frame = 2
Query:   32 WRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTN 301
            WRRPKGIDS++R K KG    P+IG+ S +  R   P+G+++ ++HNV ELE L    +   A IAH V  KKR EI++RA +L + V N
Sbjct:   40 WRRPKGIDSKMRLKLKGKPRSPSIGWSSPRLVRGLHPSGYEEVLIHNVKELEKL--DPKRQAARIAHTVGKKKRIEILKRAQELGIKVLN 127          
BLAST of FC871878 vs. ExPASy Swiss-Prot
Match: RL32_METKA (50S ribosomal protein L32e OS=Methanopyrus kandleri GN=rpl32 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.148e-15
Identity = 42/92 (45.65%), Postives = 59/92 (64.13%), Query Frame = 2
Query:   26 ENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTN 301
            E WRRPKG  S++RRK K    MPN GYGS KK R   P+G+++ +V+N  +LE   +  +   A IA  V  +KR+EI+E+A +L +VV N
Sbjct:   41 EKWRRPKGRHSKMRRKLKSKPKMPNPGYGSPKKVRGLHPSGYEEVLVYNPKDLE--KIDPKRQAARIASRVGRRKRQEILEKAEELGIVVLN 130          
BLAST of FC871878 vs. ExPASy Swiss-Prot
Match: RL32_TRIHA (60S ribosomal protein L32 OS=Trichoderma harzianum GN=rpl32 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 9.008e-14
Identity = 43/88 (48.86%), Postives = 53/88 (60.23%), Query Frame = 2
Query:    2 SDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELL----MMHNRTYCAEIAHNVSTKKR 253
            SDR   V  +WR+PKGID RVRR+F+G + MP IGYGS+KKTR   P+G   F +HN   L       M       AEIA  VS++KR
Sbjct:   23 SDRFDRVGSSWRKPKGIDGRVRRRFRGTIRMPKIGYGSNKKTRFLTPSGHNAF-LHNARTLSCAAGCSMQSTDPSAAEIATPVSSRKR 109          
BLAST of FC871878 vs. ExPASy Swiss-Prot
Match: RL32_THESM (50S ribosomal protein L32e OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rpl32e PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.471e-13
Identity = 39/90 (43.33%), Postives = 57/90 (63.33%), Query Frame = 2
Query:   32 WRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTN 301
            WR+PKG DS++R K KG    P+IG+ S K  R   P+G+++ +V+NV +LEL+   ++   A IA  V  KKR  I+ERA +L + V N
Sbjct:   38 WRKPKGTDSKMRVKLKGKARSPSIGWSSPKAVRGLHPSGYEEVLVYNVKDLELI--DSKRQAARIAATVGKKKRIMIIERARELGIKVLN 125          
The following BLAST results are available for this feature:
BLAST of FC871878 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
RL32_YEAST6.015e-2656.1960S ribosomal protein L32 OS=Saccharomyces cerevis... [more]
RL32_CANAL1.750e-2553.3360S ribosomal protein L32 OS=Candida albicans GN=R... [more]
RL32_CANGA1.935e-2454.2960S ribosomal protein L32 OS=Candida glabrata GN=R... [more]
RL32_ENCCU1.174e-2149.5560S ribosomal protein L32 OS=Encephalitozoon cunic... [more]
RL32_PYRFU1.257e-1548.8950S ribosomal protein L32e OS=Pyrococcus furiosus ... [more]
RL32_PYRHO3.657e-1547.7850S ribosomal protein L32e OS=Pyrococcus horikoshi... [more]
RL32_PYRAB8.148e-1546.6750S ribosomal protein L32e OS=Pyrococcus abyssi GN... [more]
RL32_METKA8.148e-1545.6550S ribosomal protein L32e OS=Methanopyrus kandler... [more]
RL32_TRIHA9.008e-1448.8660S ribosomal protein L32 OS=Trichoderma harzianum... [more]
RL32_THESM4.471e-1343.3350S ribosomal protein L32e OS=Thermococcus sibiric... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK3CC06FM1 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK3CC06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871878 ID=FC871878; Name=FC871878; organism=Citrus sinensis; type=EST; length=742bp
GAGTGACAGGAAGATATCAGTGAAGGAAAATTGGCGAAGGCCGAAGGGTA
TTGATTCACGTGTCAGGAGAAAGTTCAAAGGATGTGTTCTGATGCCCAAT
ATTGGCTACGGCTCGGACAAGAAAACACGCCACTATCTGCCCAATGGATT
CAAGAAGTTTGTTGTGCACAATGTCAATGAACTGGAACTCTTGATGATGC
ACAACAGGACTTATTGTGCTGAGATAGCCCACAACGTATCAACCAAGAAG
AGAAAGGAGATTGTCGAGCGTGCTGCACAATTGGATGTTGTGGTCACCAA
CAAATTGGCCAGGTTGCGCAGCCAGGAGGAGGAGTAAAAATTGGTTTCTA
TATTTTATGTTAGTGTTTGCTTTTGGCCAAATGTTTCCTAGGTTGTCTTT
GGAATGGATGAACATTTCCAGGGTTGAATTATGATGTATTTTCTATTTTT
GTCACCTGAATGATATTTTGAATTTGTTGTTTTTTGCGGAGCATGATTAA
TGTTATGTCAACTTAGGAGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCCCCCCTTTTTT
TTTCAATTGGGGGTTTATAAAAAAAATTTTTTTTTTTTTTTTTTGGGACA
AAAGGGGCCCCCCCCCCCAAAAAAAAATCTTTTTTTCCCCCC
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