CV885255

Overview
NameCV885255
Unique NameCV885255
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length870
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV885255 vs. ExPASy Swiss-Prot
Match: PPR71_ARATH (Pentatricopeptide repeat-containing protein At1g34160 OS=Arabidopsis thaliana GN=PCMP-H68 PE=2 SV=2)

HSP 1 Score: 216.083 bits (549), Expect = 2.093e-55
Identity = 105/239 (43.93%), Postives = 153/239 (64.02%), Query Frame = -2
Query:  123 LEHYTCVVDLLGRCGCLDEAEALIRNMPVKADTIIWKTLLSACKIHKSTDMAGRIAEEVLKLNPRDAAPYVLLSNIHASAKRWQGVSELREAMRERNVKKEPGVSWLEIKNQVHQFTMGDKSHPSSMEIDLYLEELTSEMKLRGYVPDTGADMHDMDNEEKEYNLKHHSEKLAIAFALM---NTPTGVPIRVMKNLRVCSDCHVAIKYISAIKNREIIVRDASRFHHFRNGKCSCGDYW 830
            ++HY CVVDLL R G L EA  +I +M +  D ++W++LL A +I+   +MA   + E+ ++   +   +VLLSN++A+  RW+ V  +R+ M  + VKK PG+S++E K  +H+F   DKSH    EI   ++E+  +++  GYV  TG  +HD+  EEKE  L +HSEKLA+A+ LM         P+RV+ NLR+C DCHV  K+IS I  REIIVRD  RFH F++G CSC D+W
Sbjct:  343 MKHYGCVVDLLSRAGRLREAHDIICSMSMIPDPVLWQSLLGASEIYSDVEMAEIASREIKEMGVNNDGDFVLLSNVYAAQGRWKDVGRVRDDMESKQVKKIPGLSYIEAKGTIHEFYNSDKSHEQWREIYEKIDEIRFKIREDGYVAQTGLVLHDIGEEEKENALCYHSEKLAVAYGLMMMDGADEESPVRVINNLRICGDCHVVFKHISKIYKREIIVRDRVRFHRFKDGSCSCRDFW 581          
BLAST of CV885255 vs. ExPASy Swiss-Prot
Match: PP363_ARATH (Pentatricopeptide repeat-containing protein At5g03800 OS=Arabidopsis thaliana GN=EMB175 PE=2 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 6.090e-55
Identity = 104/243 (42.80%), Postives = 151/243 (62.14%), Query Frame = -2
Query:  123 YRLKPRLEHYTCVVDLLGRCGCLDEAEALIRNMPVKADTIIWKTLLSACKIHKSTDMAGRIAEEVLKLNPRDAAPYVLLSNIHASAKRWQGVSELREAMRERNVKKEPGVSWLEIKNQVHQFTMGDKSHPSSMEIDLYLEELTSEMKLRGYVPDTGADMHDMDNEEKEYNLKHHSEKLAIAFALMNTPT-GVPIRVMKNLRVCSDCHVAIKYISAIKNREIIVRDASRFHHFRNGKCSCGDYW 848
            Y ++P  EHYT  V +LG  G L+EAE  I +MPV+ +  + + LL +C+IH +T +A R+A+ +L   P   + Y+L SNI++++  W     +RE MRER  +K P  SW+  +N++H F   D SHP   +I   LE L  E    GY P+T   + ++D   K+  L HHS KLA+ + ++++ T G P+RVMKN+ +C DCH   KYIS +  REI++RD+S FHHF NGKCSC D W
Sbjct:  654 YDIEPTTEHYTAFVRVLGHWGLLEEAEDTINSMPVQPEVSVLRALLDSCRIHSNTSVAKRVAKLILSTKPETPSEYILKSNIYSASGFWHRSEMIREEMRERGYRKHPAKSWIIHENKIHSFHARDTSHPQEKDIYRGLEILIMECLKVGYEPNTEYVLQEVDEFMKKSFLFHHSAKLAVTYGILSSNTRGKPVRVMKNVMLCGDCHEFFKYISVVVKREIVLRDSSGFHHFVNGKCSCRDLW 896          
BLAST of CV885255 vs. ExPASy Swiss-Prot
Match: PP122_ARATH (Pentatricopeptide repeat-containing protein At1g74630 OS=Arabidopsis thaliana GN=PCMP-H71 PE=2 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 2.314e-54
Identity = 100/250 (40.00%), Postives = 157/250 (62.80%), Query Frame = -2
Query:  123 FDLMVKKYRLKPRLEHYTCVVDLLGRCGCLDEAEALIRNMPVKADTIIWKTLLSACKIHKSTDMAGRIAEEVLKLNPRDAAPYVLLSNIHASAKRWQGVSELREAMRERNVKKEPGVSWLEIKNQVHQFTMGDKSHPSSMEIDLYLEELTSEMK-LRGYVPDTGADMHDMDNEEKEYNLKHHSEKLAIAFALMNTPTGVPIRVMKNLRVCSDCHVAIKYISAIKNREIIVRDASRFHHFRNGKCSCGDYW 869
            F  M + Y ++P +EHY C+VDL GR G L +A   I  MP+    I+W+TLL AC  H + ++A ++ + + +L+P ++   VLLSN +A+A +W+ V+ +R++M  + +KK    S +E+   +++FT G+K     +E    L+E+   +K   GY P+  + ++D++ EEKE  +  HSEKLA+AFAL     G  IR++KNLR+C DCH  +K  S +   EI+VRD +RFH F++G CSC DYW
Sbjct:  394 FSEMKRVYHIEPEIEHYGCMVDLYGRSGKLQKAYDFICQMPIPPTAIVWRTLLGACSSHGNIELAEQVKQRLNELDPNNSGDLVLLSNAYATAGKWKDVASIRKSMIVQRIKKTTAWSLVEVGKTMYKFTAGEKKKGIDIEAHEKLKEIILRLKDEAGYTPEVASALYDVEEEEKEDQVSKHSEKLALAFALARLSKGANIRIVKNLRICRDCHAVMKLTSKVYGVEILVRDRNRFHSFKDGSCSCRDYW 643          
BLAST of CV885255 vs. ExPASy Swiss-Prot
Match: PPR45_ARATH (Pentatricopeptide repeat-containing protein At1g15510, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H73 PE=2 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 5.155e-54
Identity = 101/243 (41.56%), Postives = 146/243 (60.08%), Query Frame = -2
Query:  129 VKKYRLKPRLEHYTCVVDLLGRCGCLDEAEALIRNMPVKADTIIWKTLLSACKIHKSTDMAGRIAEEVLKLNPRDAAPYVLLSNIHASAKRWQGVSELREAMRERNVKKEPGVSWLEIKNQVHQFTMGDKSHPSSMEIDLYLEELTSEMKLRGYVPDTGADMHDMDNEEKEYNLKHHSEKLAIAFALMNTPTGVPIRVMKNLRVCSDCHVAIKYISAIKNREIIVRDASRFHHFRNGKCSCGD 857
            ++ Y + P L+HY CVVDLLGR G L EA   I+ MPV  D  +W  LL+AC+IH   D+    A+ + +L+ +    Y+LL N++A   +W+ V+++R  M+E  +  + G SW+E+K +VH F   DK HP + EI+  LE    +M   G    + +   D     ++     HSE+ AIAF L+NT  G+PI V KNL +C +CH  +K+IS    REI VRDA  FHHF++G+CSCGD
Sbjct:  624 MEDYGVTPNLKHYACVVDLLGRAGELQEAHKFIQKMPVTPDPAVWGALLNACRIHHKIDLGELSAQHIFELDKKSVGYYILLCNLYADCGKWREVAKVRRMMKENGLTVDAGCSWVEVKGKVHAFLSDDKYHPQTKEINTVLEGFYEKMSEVGLTKISESSSMDETEISRDEIFCGHSERKAIAFGLINTVPGMPIWVTKNLSMCENCHDTVKFISKTVRREISVRDAEHFHHFKDGECSCGD 866          
BLAST of CV885255 vs. ExPASy Swiss-Prot
Match: PP284_ARATH (Pentatricopeptide repeat-containing protein At3g56550 OS=Arabidopsis thaliana GN=PCMP-H80 PE=2 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 1.270e-52
Identity = 102/250 (40.80%), Postives = 153/250 (61.20%), Query Frame = -2
Query:  123 FDLMVKKYRLKPRLEHYTCVVDLLGRCGCLDEAEALIRNMPVKADTIIWKTLLSACKIHKSTDMAGRIAEEVLKLNPRDAAPYVLLSNIHASAKRWQGVSELREAMRERNVKKEPGVSWLEIKNQVHQFTMGDKSHPSSMEIDLYLEELTSEMKLRGYVP-DTGADMHDMDNEEKEYNLKHHSEKLAIAFALMNTPTGVPIRVMKNLRVCSDCHVAIKYISAIKNREIIVRDASRFHHFRNGKCSCGDYW 869
            F++M  ++ L P ++HY C+VDL GR G L+ +  +I       D ++W+TLL +CKIH++ ++     +++++L   +A  YVL+++I+++A   Q  + +R+ +R  +++  PG SW+EI +QVH+F + DK HP S  I   L E+ +   L GY P D+      + +         HSEKLAIA+ LM T  G  +R+ KNLRVC DCH   KY+S   NREIIVRD  RFHHF +G CSC DYW
Sbjct:  332 FEIMSSQFHLTPNVKHYGCMVDLYGRAGQLENSLEMIYASSCHEDPVLWRTLLGSCKIHRNLELGEVAMKKLVQLEAFNAGDYVLMTSIYSAANDAQAFASMRKLIRSHDLQTVPGWSWIEIGDQVHKFVVDDKMHPESAVIYSELGEVINRAILAGYKPEDSNRTAPTLSDRCLGSADTSHSEKLAIAYGLMRTTAGTTLRITKNLRVCRDCHSFTKYVSKAFNREIIVRDRVRFHHFADGICSCNDYW 581          
BLAST of CV885255 vs. ExPASy Swiss-Prot
Match: PP427_ARATH (Pentatricopeptide repeat-containing protein At5g50390, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H58 PE=2 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 6.968e-51
Identity = 93/250 (37.20%), Postives = 157/250 (62.80%), Query Frame = -2
Query:  123 MVKKYRLKPRLEHYTCVVDLLGRCGCLDEAEALIRNMPVKADTIIWKTLLSACKIHKSTDMAGRIAEEVLKLNPRDAAPYVLLSNIHASAKRWQGVSELREAMRERNVKKEPGVSWLEIKNQVHQFTMGDK--SHPSSMEIDLY--LEELTSEMKLRGYVPDTGADMHDMDNEEKEYNLKHHSEKLAIAFALMNTPTGVPIRVMKNLRVCSDCHVAIKYISAIKNREIIVRDASRFHHFRNGKCSCGDYW 860
            M + + +KPR  HY C+++LLGR G LDEA A IR  P+K    +W  LL+AC++ ++ ++   +AE++  + P     YV++ N++ S  +    + + E +  + +   P  +W+E+ +Q H F  GD+  S+  +++  +Y  ++EL  E+   GY  +    + D+D +E+E   ++HSEKLAIA+ L+NTP   P+++ +N R+C +CH  +++IS +  RE++VRDASRFHHF+ GKCSCG YW
Sbjct:  452 MSEVHGIKPRAMHYACMIELLGRDGLLDEAIAFIRRAPLKTTVNMWAALLNACRMQENLELGRVVAEKLYGMGPEKLGNYVVMYNMYNSMGKTAEAAGVLETLESKGLSMMPACTWVEVGDQTHSFLSGDRFDSYNETVKRQIYQKVDELMEEISEYGYSEEEQHLLPDVDEKEEERVGRYHSEKLAIAYGLVNTPEWNPLQITQNHRICKNCHKVVEFISLVTGREMVVRDASRFHHFKEGKCSCGGYW 701          
BLAST of CV885255 vs. ExPASy Swiss-Prot
Match: PP313_ARATH (Pentatricopeptide repeat-containing protein At4g15720 OS=Arabidopsis thaliana GN=PCMP-H1 PE=2 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 2.648e-50
Identity = 102/255 (40.00%), Postives = 152/255 (59.61%), Query Frame = -2
Query:  123 LMVKKYRLKPRLEHYTCVVDLLGRCGCLDEAEALIRNMPVKAD--TIIWKTLLSACKIHKSTDMAGRIAEEVLKLNPRDAAPYVLLSNIHASAKRWQGVSELREAMRERNVKKEPGVSWLEIKNQVHQFTMGDKSHPSSMEIDLYLEELTSEMKLRGY------VPDTGADMHDMDNEEKEYNLKHHSEKLAIAFALMNTPTGVPIRVMKNLRVCSDCHVAIKYISAIKNREIIVRDASRFHHFRNGKCSCGDYW 863
            LM +KY + P   HYTCVVD+LGR G +DEA  L + + V A+   ++W  LLSA ++H   ++    ++ +++ N +  + Y+ LSN +A +  W+    LR  M+     KE   SW+E K+ V+ F  GD S   S EI+ +L++L   MK RG+      +  + +   D+D E K+  +  H E+LA+A+ L++ P G  IR+M NLR+C DCH A K IS I  REI+VRD +RFH F+NG C+C DYW
Sbjct:  362 LMAEKYGVVPDSRHYTCVVDMLGRFGRVDEAYELAKTIEVGAEQGALLWGALLSAGRLHGRVEIVSEASKRLIQSNQQVTSAYIALSNAYAVSGGWEDSESLRLEMKRSGNVKERACSWIENKDSVYVFHAGDLSCDESGEIERFLKDLEKRMKERGHRGSSSMITTSSSVFVDVDEEAKDEMVSLHCERLALAYGLLHLPAGSTIRIMNNLRMCRDCHEAFKLISEIVEREIVVRDVNRFHCFKNGSCTCRDYW 616          
BLAST of CV885255 vs. ExPASy Swiss-Prot
Match: PP114_ARATH (Pentatricopeptide repeat-containing protein At1g71420 OS=Arabidopsis thaliana GN=PCMP-H70 PE=2 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 1.314e-49
Identity = 102/257 (39.69%), Postives = 158/257 (61.48%), Query Frame = -2
Query:  123 FDLMVKKYRLKPRLEHYTCVVDLLGRCGCLDEAEALIRNMPVKADTIIWKTLLSACKIHKSTDMAGRIAEEVLK--LNPRDAAPYVLLSNIHASAKRWQGVSELREAMRERNVKKEPGVSWLEIKNQVHQFTMGDKSHPSSMEIDLYLEELTSEMKLRGYVPDTGADMHDMDNEEKEY-NLKHHSEKLAIAFALM----NTPTGVP-IRVMKNLRVCSDCHVAIKYISAIKNREIIVRDASRFHHFRNGKCSCGDYW 869
            F  M +K    P+L HY CV+D+L R     EAE +I+ MP+  D ++W  LL +C+ H +T + G++A + LK  + P ++  Y+ +SNI+ +   +   +   + M    V+KEP +SW EI N+VH+F  G +  P    +   L+ L S +K  GYVP+  +   D+++EE+E  NL HHSEKLA+AFA+M    ++  GV  I++MKN R+C DCH  +K  S +  +EI++RD++RFHHF++  CSC DYW
Sbjct:  490 FRSMFEKPETLPQLNHYACVIDMLSRAERFAEAEEVIKQMPMDPDAVVWIALLGSCRKHGNTRL-GKLAADKLKELVEPTNSMSYIQMSNIYNAEGSFNEANLSIKEMETWRVRKEPDLSWTEIGNKVHEFASGGRHRPDKEAVYRELKRLISWLKEMGYVPEMRSASQDIEDEEQEEDNLLHHSEKLALAFAVMEGRKSSDCGVNLIQIMKNTRICIDCHNFMKLASKLLGKEILMRDSNRFHHFKDSSCSCNDYW 745          
BLAST of CV885255 vs. ExPASy Swiss-Prot
Match: PP350_ARATH (Pentatricopeptide repeat-containing protein At4g35130, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H27 PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.902e-40
Identity = 85/250 (34.00%), Postives = 139/250 (55.60%), Query Frame = -2
Query:  123 FDLMVKKYRLKPRLEHYTCVVDLLGRCGCLDEAEALIRNMPVKADTIIWKTLLSACKIHKSTDMAGRIAEEVLKLNPRDAAPYVLLSNIHASAKRWQGVSELREAMRERNVKKEPGVSWLEIKNQVHQFTMGDKSHPSSMEIDLYLEELTSEMKLRG-YVPDTGADMHDMDNEEKEYNLKHHSEKLAIAFALMNTPTGVPIRVMKNLRVCSDCHVAIKYISAIKNREIIVRDASRFHHFRNGKCSCGDYW 869
            F+ M ++Y + P +EHY C++DL+GR G    A+  +  MP      IW +LL+A + HK   +A   AE++ K+   +   YVLL N++A A RW+ V+ ++  M  + + +    S +E K + H FT GD+SH ++ +I   L+ ++  +     YV        +   + +  + + HS +LA  F L++T TG  + V  N R+C  CH  ++  S +  REI+V D+  FHHF NG+CSCG+YW
Sbjct:  555 FESMKREYGIDPGIEHYGCMLDLIGRTGNFSAAKRFLEEMPFVPTARIWGSLLNASRNHKDITIAEFAAEQIFKMEHDNTGCYVLLLNMYAEAGRWEDVNRIKLLMESKGISRTSSRSTVEAKGKSHVFTNGDRSHVATNKIYEVLDVVSRMVGEEDIYVHCVSRLRPETLVKSRSNSPRRHSVRLATCFGLISTETGRRVTVRNNTRICRKCHEFLEKASRLTRREIVVGDSKIFHHFSNGRCSCGNYW 804          
BLAST of CV885255 vs. ExPASy Swiss-Prot
Match: PP333_ARATH (Pentatricopeptide repeat-containing protein At4g21300 OS=Arabidopsis thaliana GN=PCMP-E36 PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 2.325e-38
Identity = 74/184 (40.22%), Postives = 113/184 (61.41%), Query Frame = -2
Query:  318 FDLMVKKYRLKPRLEHYTCVVDLLGRCGCLDEAEALIRNMPVKADTIIWKTLLSACKIHKSTDMAGRIAEEVLKLNPRDAAPYVLLSNIHASAKRWQGVSELREAMRERNVKKEPGVSWLEIKNQVHQFTMGDKSHPSSMEIDLYLEELTSEMKLRGYVPDTGADMHDMDNEEKEYNLKHHSEK 869
            F  M + Y ++P+ EHY CVVDL GR G L EA   +++MP   D  +W TLL AC++HK+ ++A   + +++ L+P ++  YVL+SN HA+A+ W+ V+++R  M+ER V+K PG SW+EI  + H F  GD +HP S  I   L  L  E++L GY+P     +H  ++  K Y +    EK
Sbjct:  667 FRSMTEDYGIQPQQEHYACVVDLFGRAGRLTEAYETVKSMPFPPDAGVWGTLLGACRLHKNVELAEVASSKLMDLDPSNSGYYVLISNAHANAREWESVTKVRSLMKEREVQKIPGYSWIEINKRTHLFVSGDVNHPESSHIYSLLNSLLGELRLEGYIPQPYLPLHP-ESSRKVYPVSRFIEK 849          
The following BLAST results are available for this feature:
BLAST of CV885255 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 192
Match NameE-valueIdentityDescription
PPR71_ARATH2.093e-5543.93Pentatricopeptide repeat-containing protein At1g34... [more]
PP363_ARATH6.090e-5542.80Pentatricopeptide repeat-containing protein At5g03... [more]
PP122_ARATH2.314e-5440.00Pentatricopeptide repeat-containing protein At1g74... [more]
PPR45_ARATH5.155e-5441.56Pentatricopeptide repeat-containing protein At1g15... [more]
PP284_ARATH1.270e-5240.80Pentatricopeptide repeat-containing protein At3g56... [more]
PP427_ARATH6.968e-5137.20Pentatricopeptide repeat-containing protein At5g50... [more]
PP313_ARATH2.648e-5040.00Pentatricopeptide repeat-containing protein At4g15... [more]
PP114_ARATH1.314e-4939.69Pentatricopeptide repeat-containing protein At1g71... [more]
PP350_ARATH1.902e-4034.00Pentatricopeptide repeat-containing protein At4g35... [more]
PP333_ARATH2.325e-3840.22Pentatricopeptide repeat-containing protein At4g21... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_2_013F01_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_013_T3_F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885255 ID=CV885255; Name=CV885255; organism=Citrus sinensis; type=EST; length=870bp
TTTTTTTTTTGGTAATCAAAGAAGTATGAATACTCTTTTATTTCCTTTTT
GATATAAAGTTTACAAAACCAATCTTTTGGCAGTAGAGCTTACAACTATG
AGAGCAATGAATCATCTTCTTACCAGTAATCTCCACAAGAGCATTTCCCA
TTTCTGAAATGATGAAATCTACTGGCATCTCGAACAATAATTTCTCTGTT
TTTAATTGCTGAAATGTACTTAATAGCAACATGGCAATCACTGCAGACGC
GCAAGTTCTTCATCACCCTTATTGGTACACCCGTGGGTGTGTTCATCAGA
GCAAACGCAATTGCAAGCTTTTCACTATGGTGTTTCAAATTATATTCCTT
TTCCTCATTGTCCATGTCATGCATATCAGCGCCGGTATCAGGTACATAGC
CCCGTAGCTTCATCTCTGATGTTAGTTCTTCCAAATACAAATCAATCTCC
ATCGAACTTGGATGAGATTTGTCGCCCATGGTAAACTGATGAACTTGATT
CTTTATTTCTAACCAGCTTACACCTGGTTCCTTCTTCACATTCCTCTCTC
TCATGGCCTCTCTCAACTCGGAAACACCCTGCCACCTCTTAGCAGAAGCA
TGAATGTTAGAAAGCAGCACATAAGGAGCCGCATCCCGAGGATTAAGCTT
AAGAACTTCTTCAGCGATTCTTCCAGCCATATCAGTACTCTTATGGATTT
TACATGCAGATAACAAAGTTTTCCATATGATAGTATCGGCTTTGACAGGC
ATGTTTCTTATCAGAGCCTCTGCTTCATCTAAACAACCACAACGGCCAAG
TAGGTCAACCACACATGTATAATGTTCTAATCTAGGCTTCAGACGATACT
TCTTTACCATCAAATCAAAG
back to top