CV885252

Overview
NameCV885252
Unique NameCV885252
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length888
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV885252 vs. ExPASy Swiss-Prot
Match: FTSH_CYAME (Cell division protease ftsH homolog OS=Cyanidioschyzon merolae GN=ftsH PE=3 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 5.507e-59
Identity = 114/218 (52.29%), Postives = 152/218 (69.72%), Query Frame = -3
Query:  233 EIDDSIDRIVAGMEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQITGLAKQMVTTFGMSEIGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILSEFVEIPAEN 886
            EIDD+IDR++AGMEGT + DGK K L+AYHE GHA+  TL P H PVQKVTL+PR QA+GLTWF+  ++  L+SK QL + I+  LGGRAAEE +FG  EVTTGA+ DLQQ+T LA+QMVT FGMS +GP  L  G++   +   M     +SE++   IDA V+ + +  YE  L  ++ NR  +D+IVE L+EKET+ G EFR ++S+   + A N
Sbjct:  386 EIDDAIDRVIAGMEGTPIMDGKIKRLIAYHETGHALTATLLPNHPPVQKVTLIPRRQAKGLTWFMQDNERDLLSKSQLMSMIMVALGGRAAEEAVFGNAEVTTGASNDLQQVTNLARQMVTRFGMSSLGPLCLETGNEEIFLGRDMRLMPEVSEEVIAQIDAQVRGMIEACYEKVLELMQANRVVMDRIVEELMEKETLDGKEFRQLVSQAARLTAVN 603          
BLAST of CV885252 vs. ExPASy Swiss-Prot
Match: FTSH_CYACA (Cell division protease ftsH homolog OS=Cyanidium caldarium GN=ftsH PE=3 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 7.443e-56
Identity = 103/212 (48.58%), Postives = 148/212 (69.81%), Query Frame = -3
Query:  251 EIDDSIDRIVAGMEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQITGLAKQMVTTFGMSEIGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILSEFV 886
            EI+DSID+I+AG+EG+ + D + K L+AYHE GHA+  T  P HDPVQKVTL+PR QA+GLTWF+P+DD  L+SK Q+ ++I+  L GRA EE++FG PEVT GAA D++Q+T +A+QMVT FGMS++GP  L + S    +   +M R+ +SE++   +D  V+ +    Y  A + +  NR+ ID++V  L+EKET+   EF  I+ E V
Sbjct:  403 EIEDSIDKIIAGLEGSPLADSRIKRLIAYHEAGHAVAATFLPHHDPVQKVTLIPRRQAKGLTWFLPNDDQFLVSKSQILSKIIAALAGRAMEEIVFGLPEVTIGAANDIKQVTFMARQMVTKFGMSKVGPICLENSSSEVFIGRDLMGRHELSEEMVAKVDLEVRSILKDCYIQARTILSQNRKLIDRVVNELVEKETIEAKEFMRIVEERV 614          
BLAST of CV885252 vs. ExPASy Swiss-Prot
Match: FTSH2_SYNY3 (Cell division protease ftsH homolog 2 OS=Synechocystis sp. (strain PCC 6803) GN=slr1390 PE=3 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 1.270e-55
Identity = 106/211 (50.24%), Postives = 148/211 (70.14%), Query Frame = -3
Query:  254 EIDDSIDRIVAGMEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQITGLAKQMVTTFGMSEIGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILSEF 886
            E++D+IDR+VAGMEGT + D KSK L+AYHEVGHA+ GTL PGHDPV+KVTL+PRGQA+GLTWF P +D +L+++ Q+ ARI G LGGR AEEVIFG+ EVTTGA  D+++IT LA+QMVT  GMS +G  +L +             R+  SE +A  ID  ++ +   A++ A   I  NR  +D +V+ L+++ET+ G+ FR ++  +
Sbjct:  443 EVNDAIDRVVAGMEGTPLVDSKSKRLIAYHEVGHALIGTLCPGHDPVEKVTLIPRGQAQGLTWFTPDEDQSLMTRNQMIARIAGLLGGRVAEEVIFGDDEVTTGAGNDIEKITYLARQMVTKLGMSSLGLVALEEEGDRNFSGGDWGKRSEYSEDIAARIDREIQAIVTAAHQRATRIIEENRNLMDLLVDALIDQETIEGEHFRQLVESY 653          
BLAST of CV885252 vs. ExPASy Swiss-Prot
Match: FTSH4_SYNY3 (Cell division protease ftsH homolog 4 OS=Synechocystis sp. (strain PCC 6803) GN=slr1604 PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 6.983e-46
Identity = 102/217 (47.00%), Postives = 148/217 (68.20%), Query Frame = -3
Query:  260 EIDDSIDRIVAGME--GTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDD---PTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQITGLAKQMVTTFGMSE-IGPWSLMDGSQSGDVIM--RMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILS 886
            E++D+IDR++AG E    VM++ K K+LVAYHE GHA+ G L P +DPVQK++++PRG+A GLTWF PS+D     L S+  L  ++   LGGR AEE+IFGE EVTTGA+ DLQQ+  +A+QMVT FGMS+ +GP +L  G Q G V +   + +    S++ A  ID  V +L D+AY+ A   +  NR  +D++ E+L+EKET+  +E + +L+
Sbjct:  393 EVNDAIDRVLAGPEKKNRVMSE-KRKTLVAYHEAGHALVGALMPDYDPVQKISIIPRGRAGGLTWFTPSEDRMESGLYSRSYLQNQMAVALGGRIAEEIIFGEEEVTTGASNDLQQVARVARQMVTRFGMSDRLGPVAL--GRQGGGVFLGRDIASDRDFSDETAAAIDEEVSQLVDQAYQRAKQVLVENRGILDQLAEILVEKETVDSEELQTLLA 606          
BLAST of CV885252 vs. ExPASy Swiss-Prot
Match: FTSH_TOBAC (Cell division protease ftsH homolog, chloroplastic OS=Nicotiana tabacum GN=FTSH PE=2 SV=2)

HSP 1 Score: 160.229 bits (404), Expect = 1.410e-38
Identity = 94/223 (42.15%), Postives = 141/223 (63.23%), Query Frame = -3
Query:  236 EIDDSIDRIVAGME--GTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSD---DPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQITGLAKQMVTTFGMS-EIGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILSEFVEIPAE 886
            EI D+++RI+AG E    V++D K K LVAYHE GHA+ G L P +DPV K++++PRGQA GLT+F PS+   +  L S+  L  ++   LG R AEEVIFG+  VTTGA+ D  Q++ +A+QMV   G S +IG  ++  G  +  +  +M  +   S   A+ +DA V+ L +RAYE A   I  + + + K+ ++L+EKET+ G+EF   +S F++  AE
Sbjct:  485 EISDALERIIAGPEKKNAVVSDEKKK-LVAYHEAGHALVGALMPEYDPVAKISIIPRGQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGERVAEEVIFGQDNVTTGASNDFMQVSRVARQMVERLGFSKKIGQVAIGGGGGNPFLGQQMSTQKDYSMATADVVDAEVRELVERAYERATEIITTHIDILHKLAQLLIEKETVDGEEF---MSLFIDGKAE 703          
BLAST of CV885252 vs. ExPASy Swiss-Prot
Match: FTSH1_ARATH (Cell division protease ftsH homolog 1, chloroplastic OS=Arabidopsis thaliana GN=FTSH1 PE=1 SV=2)

HSP 1 Score: 159.073 bits (401), Expect = 3.142e-38
Identity = 92/224 (41.07%), Postives = 142/224 (63.39%), Query Frame = -3
Query:  236 EIDDSIDRIVAGMEG-TVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSD---DPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQITGLAKQMVTTFGMS-EIGPWSLMDGSQSGDVIM--RMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILSEFVEIPAE 886
            EI D+++RI+AG E    +   + K LVAYHE GHA+ G L P +DPV K++++PRGQA GLT+F PS+   +  L S+  L  ++   LGGR AEEVIFG+  VTTGA+ D  Q++ +A+QM+  FG S +IG  ++  G   G+  M  +M ++   S   A+ +DA V+ L ++AY+ A   I  + + + K+ ++L+EKET+ G+EF   +S F++  AE
Sbjct:  494 EISDALERIIAGPEKKNAVVSEEKKRLVAYHEAGHALVGALMPEYDPVAKISIIPRGQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGDENVTTGASNDFMQVSRVARQMIERFGFSKKIGQVAV--GGPGGNPFMGQQMSSQKDYSMATADIVDAEVRELVEKAYKRATEIITTHIDILHKLAQLLIEKETVDGEEF---MSLFIDGQAE 712          
BLAST of CV885252 vs. ExPASy Swiss-Prot
Match: FTSH1_ORYSJ (Cell division protease ftsH homolog 1, chloroplastic OS=Oryza sativa subsp. japonica GN=FTSH1 PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 1.194e-37
Identity = 91/224 (40.62%), Postives = 141/224 (62.95%), Query Frame = -3
Query:  236 EIDDSIDRIVAGMEG-TVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSD---DPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQITGLAKQMVTTFGMS-EIGPWSLMDGSQSGDVIM--RMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILSEFVEIPAE 886
            EI D+++RI+AG E    +   + + LVAYHE GHA+ G L P +DPV K++++PRGQA GLT+F PS+   +  L S+  L  ++   LGGR AEEVIFG+  VTTGA+ D  Q++ +A+QMV  FG S +IG  ++  G   G+  +  +M ++   S   A+ +DA V+ L ++AY  A   I  + + + K+ ++L+EKET+ G+EF   +S F++  AE
Sbjct:  464 EISDALERIIAGPEKKNAVVSEEKRRLVAYHEAGHALVGALMPEYDPVAKISIIPRGQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGQENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAI--GGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVEKAYSRATQIITTHIDILHKLAQLLMEKETVDGEEF---MSLFIDGQAE 682          
BLAST of CV885252 vs. ExPASy Swiss-Prot
Match: FTSH_MEDSA (Cell division protease ftsH homolog, chloroplastic OS=Medicago sativa GN=FTSH PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 2.036e-37
Identity = 91/222 (40.99%), Postives = 139/222 (62.61%), Query Frame = -3
Query:  236 EIDDSIDRIVAGMEG-TVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSD---DPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQITGLAKQMVTTFGMS-EIGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILSEFVEIPAE 886
            EI D+++RI+AG E    +   + K LVAYHE GHA+ G L P +DPV K++++PRGQA GLT+F PS+   +  L S+  L  ++   LGGR AEEV FG+  VTTGA+ D  Q++ +A+QMV  FG S +IG  ++  G  +  +  +M ++   S   A+ +D  V+ L D+AYE A   I  + + + K+ ++L+EKET+ G+EF   +S F++  AE
Sbjct:  485 EIADALERIIAGPEKKNAVVSEEKKKLVAYHEAGHALVGALMPEYDPVAKISIIPRGQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEV-FGQDNVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAIGGGGGNPFLGQQMSSQKDYSMATADIVDKEVRELVDKAYERATQIINTHIDILHKLAQLLIEKETVDGEEF---MSLFIDGKAE 702          
BLAST of CV885252 vs. ExPASy Swiss-Prot
Match: FTSH5_ARATH (Cell division protease ftsH homolog 5, chloroplastic OS=Arabidopsis thaliana GN=FTSH5 PE=1 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 2.660e-37
Identity = 90/222 (40.54%), Postives = 137/222 (61.71%), Query Frame = -3
Query:  236 EIDDSIDRIVAGMEG-TVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSD---DPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQITGLAKQMVTTFGMS-EIGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILSEFVEIPAE 886
            EI D+++RI+AG E    +   + K LVAYHE GHA+ G L P +DPV K++++PRGQA GLT+F PS+   +  L S+  L  ++   LGGR AEEVIFG+  VTTGA+ D  Q++ +A+QMV  FG S +IG  ++     +  +   M ++   S   A+ +DA V+ L ++AY  A   I    + + K+ ++L+EKET+ G+EF   +S F++  AE
Sbjct:  482 EISDALERIIAGPEKKNAVVSEEKKRLVAYHEAGHALVGALMPEYDPVAKISIIPRGQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGDENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAVGGAGGNPFLGQSMSSQKDYSMATADVVDAEVRELVEKAYVRAKEIITTQIDILHKLAQLLIEKETVDGEEF---MSLFIDGQAE 700          
BLAST of CV885252 vs. ExPASy Swiss-Prot
Match: FTSH3_SYNY3 (Cell division protease ftsH homolog 3 OS=Synechocystis sp. (strain PCC 6803) GN=sll1463 PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 5.925e-37
Identity = 89/212 (41.98%), Postives = 140/212 (66.04%), Query Frame = -3
Query:  257 DSIDRIVAGME--GTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQAR-GLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQITGLAKQMVTTFGMSEI-GPWSLMDGSQSGDVIMRM-MARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILSE 877
            ++I+R+VAG+E    V++D K K +VAYHEVGHA+ G + PG   V K+++VPRG A  G T  +P++D  L+++ +L  +I   LGGRAAEE++F    +TTGAA DLQ+ T LA+QMVTT+GMS++ GP +   G Q+  +   M   R  +S+  A++ID  VK + ++ +  AL+ + +NR+ ++ I E +LEKE + G+E   +L +
Sbjct:  411 EAIERVVAGLEKKSRVLSD-KEKKIVAYHEVGHALVGAVMPGGGQVAKISIVPRGMAALGYTLQMPTEDRFLLNESELRDQIATLLGGRAAEEIVF--DSITTGAANDLQRATDLAEQMVTTYGMSKVLGPLAYDKGQQNNFLGQGMGNPRRMVSDDTAKEIDLEVKEIVEQGHNQALAILEHNRDLLEAIAEKILEKEVIEGEELHHLLGQ 619          
The following BLAST results are available for this feature:
BLAST of CV885252 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
FTSH_CYAME5.507e-5952.29Cell division protease ftsH homolog OS=Cyanidiosch... [more]
FTSH_CYACA7.443e-5648.58Cell division protease ftsH homolog OS=Cyanidium c... [more]
FTSH2_SYNY31.270e-5550.24Cell division protease ftsH homolog 2 OS=Synechocy... [more]
FTSH4_SYNY36.983e-4647.00Cell division protease ftsH homolog 4 OS=Synechocy... [more]
FTSH_TOBAC1.410e-3842.15Cell division protease ftsH homolog, chloroplastic... [more]
FTSH1_ARATH3.142e-3841.07Cell division protease ftsH homolog 1, chloroplast... [more]
FTSH1_ORYSJ1.194e-3740.63Cell division protease ftsH homolog 1, chloroplast... [more]
FTSH_MEDSA2.036e-3740.99Cell division protease ftsH homolog, chloroplastic... [more]
FTSH5_ARATH2.660e-3740.54Cell division protease ftsH homolog 5, chloroplast... [more]
FTSH3_SYNY35.925e-3741.98Cell division protease ftsH homolog 3 OS=Synechocy... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_013E11_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_013_T7_E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885252 ID=CV885252; Name=CV885252; organism=Citrus sinensis; type=EST; length=888bp
TTTTTTTTACGCTGAGATTTTATGCTTCAAAAATCAGGAGCAAAACTTTA
GAAATTTACTCAATCGTGACTTTTTGAGTTAGTGTACAATCCTACTTACA
TTTGATCAAGAACACATATATTATACATTCAAGTGTATGCGTTCAAAGAG
TGGCTGAAATTTCAAGTATGGATAATATTAATGCCACTCAAACAGATACA
GATAATGGTGCTGGAACAGCTGGAGGGACCCTATTTTCAGCTGGGATTTC
GACAAACTCTGAGAGGATTGCCCGGAATTCATCCCCTGACATTGTTTCCT
TCTCAAGAAGAACTTCCACGATCTTGTCAATGGCTTCACGGTTGTTCCTT
ATTTGGCTCAACGCAATCTCATAGGCACGGTCTGATAGTCTCTTGACTGC
AGCATCAATGTCTTCAGCAAGCTTCTCAGACATTGAGTTCCTTGCCATCA
TTCTCATGATGACATCACCACTTTGTGATCCGTCCATGAGCGACCATGGG
CCAATTTCAGACATTCCAAATGTGGTTACCATCTGTTTGGCCAAACCAGT
GATCTGCTGCAAATCACCAGCTGCTCCTGTTGTCACTTCAGGCTCTCCAA
AAATCACTTCCTCAGCAGCTCTACCACCGAGTCCACCAACAATTCTTGCA
AAGAGCTGCTGCTTCGATATCAAGGTGGGGTCATCTGAAGGGATGAACCA
GGTAAGACCTCTTGCCTGACCACGTGGAACAAGGGTGACTTTTTGAACGG
GATCGTGTCCTGGAGTCAAAGTTCCGCATATTGCGTGGCCAACTTCATGG
TATGCAACAAGACTTTTACTCTTCCCATCTGTCATGACAGTTCCTTCCAT
TCCAGCCACAATCCTATCAATCGAATCATCAATCTCTT
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