CV885252

Overview
NameCV885252
Unique NameCV885252
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length888
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV885252 vs. ExPASy Swiss-Prot
Match: FTSH_MYCLE (Cell division protease ftsH homolog OS=Mycobacterium leprae GN=ftsH PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.666e-29
Identity = 74/219 (33.79%), Postives = 130/219 (59.36%), Query Frame = -3
Query:  242 IDDSIDRIVAG--MEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQITGLAKQMVTTFGM-SEIGPWSLMDGSQSGDVIM--RMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILSEFVEIP 883
            +++++DR++ G   +G ++++ + K + AYHE GH +     P  +P+ KVT++ RG+  G    +P +D  L ++ ++ A++V  +GGRAAEE++F EP  TTGA  D+++ T +A+ MVT FGM S++G  ++  GS+ GD  +   M  +   S ++A DID  V++L + A+  A   +   R+ +D +   LLEKET+   E   I +   + P
Sbjct:  396 LEEAVDRVIGGPRRKGRIISE-QEKKITAYHEGGHTLAAWAMPDIEPIYKVTILARGRTGGHAVAVPEEDKGLRTRSEMIAQLVFAMGGRAAEELVFREP--TTGAVSDIEKATKIARSMVTEFGMSSKLG--AVRYGSEHGDPFLGRTMGTQADYSHEVARDIDDEVRKLIEAAHTEAWEILTEYRDVLDTLAGELLEKETLHRPELEGIFASVEKRP 609          
BLAST of CV885252 vs. ExPASy Swiss-Prot
Match: FTSH5_ORYSJ (Cell division protease ftsH homolog 5, mitochondrial OS=Oryza sativa subsp. japonica GN=FTSH5 PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 3.482e-29
Identity = 78/212 (36.79%), Postives = 122/212 (57.55%), Query Frame = -3
Query:  257 EIDDSIDRIVAGME--GTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQITGLAKQMVTTFGMSEIGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILSE 886
            +++ + DRI+ G E    V++D +S+ L AYHE GHA+    T G  PV K T+VPRG A G+   +P  D T +S++Q+ AR+   +GGR AEE+IFG+ EVT+GA+ D QQ T +A+ MVT +GMS+   +   +    G          SMS +    I+  VK   + AY  A + +  + + +  +   LLE ET++G + + IL++
Sbjct:  459 DLEYAKDRIMMGSERKSAVISD-ESRKLTAYHEGGHALVAIHTEGAHPVHKATIVPRGMALGMVAQLPDKDETSVSRKQMLARLDVCMGGRVAEELIFGDSEVTSGASSDFQQATAVARAMVTKYGMSKQLGFVSYNYEDDG---------KSMSTETRLLIEKEVKCFVENAYNNAKNILIKHNKELHALANALLEHETLTGAQIKNILAQ 660          
BLAST of CV885252 vs. ExPASy Swiss-Prot
Match: FTSH_HELFE (Cell division protease ftsH homolog OS=Helicobacter felis GN=ftsH PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 4.547e-29
Identity = 73/212 (34.43%), Postives = 126/212 (59.43%), Query Frame = -3
Query:  254 IDDSIDRIVAGMEG-TVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQAR-GLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQITGLAKQMVTTFGMSEIGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILSEF 883
            + ++++R +AG+E  +     K K +VAYHE GHA+   +T G   V KV+++PRG A  G T   P ++  L+ K +L A I   LGGRAAE+V     E++TGA+ DL++ T + K MV+ +GMS++    +++  ++  +     +    SEK+AE++D+ +K L +  Y      + + ++AI+ +V  L EKE ++G+  R I+SE+
Sbjct:  411 LKEAVERGIAGLEKKSRRISPKEKKIVAYHESGHAVISEMTKGSARVNKVSIIPRGMAALGYTLNTPEENKYLMQKHELIAEIDVLLGGRAAEDVFL--QEISTGASNDLERATDIIKGMVSYYGMSDVSGLMVLEKQRNSFLGGGFGSGREFSEKMAEEMDSFIKNLLEERYVHVKQTLSDYKDAIEVMVNELFEKEVITGERVREIISEY 620          
BLAST of CV885252 vs. ExPASy Swiss-Prot
Match: FTSH_HELPY (Cell division protease ftsH homolog OS=Helicobacter pylori GN=ftsH PE=1 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 5.939e-29
Identity = 74/212 (34.91%), Postives = 125/212 (58.96%), Query Frame = -3
Query:  254 IDDSIDRIVAGMEG-TVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQAR-GLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQITGLAKQMVTTFGMSEIGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILSEF 883
            + ++++R +AG+E  +     K K +VAYHE GHA+   +T G   V KV+++PRG A  G T   P ++  L+ K +L A I   LGGRAAE+V     E++TGA+ DL++ T + K MV+ +GMS +    +++  ++  +     +    SEK AE++D  +K L +  Y+     + + REAI+ +V+ L +KE ++G+  R I+SE+
Sbjct:  405 LKEAVERGIAGLEKKSRRISPKEKKIVAYHESGHAVISEMTKGSARVNKVSIIPRGMAALGYTLNTPEENKYLMQKHELIAEIDVLLGGRAAEDVFL--EEISTGASNDLERATDIIKGMVSYYGMSSVSGLMVLEKQRNAFLGGGYGSSREFSEKTAEEMDLFIKNLLEERYKHVKQTLSDYREAIEIMVKELFDKEVITGERVREIISEY 614          
BLAST of CV885252 vs. ExPASy Swiss-Prot
Match: YME1_CAEEL (Protein YME1 homolog OS=Caenorhabditis elegans GN=ymel-1 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 1.013e-28
Identity = 74/213 (34.74%), Postives = 120/213 (56.34%), Query Frame = -3
Query:  260 IDDSIDRIVAG--MEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQITGLAKQMVTTFGMSE---IGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILS 883
            +D++ DR++ G    G  + D ++    AYHE GH +    T    P+ KVT++PRGQ+ G T  +P  D   ++K Q+ A +   +GGR AEE+IFG+ +VTTGAA DL + T LA QMV  FGMS+   +  ++  D   +      ++  + ++ + AE IDA + R+   +Y+ A   +   ++    + E LLE ET+S DE + ++S
Sbjct:  432 LDEARDRVLMGPARTGGRIPDEEANRNTAYHEAGHTLVSLYTKDATPLHKVTIIPRGQSLGHTAMLPEKDSYQLTKAQMLATLDVMMGGRVAEELIFGDDKVTTGAADDLSKATQLAVQMVKVFGMSDKVGLRDFTAQDNESA------LVKVSDLAPQTAELIDAEINRVLQESYKRAKVILETKKKEHQLLAEALLEYETLSADEVKRVIS 638          
BLAST of CV885252 vs. ExPASy Swiss-Prot
Match: FTSH_TREPA (Cell division protease ftsH homolog OS=Treponema pallidum GN=ftsH PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 1.013e-28
Identity = 72/210 (34.29%), Postives = 123/210 (58.57%), Query Frame = -3
Query:  263 EIDDSIDRIVAGMEG-TVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRG-QARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQITGLAKQMVTTFGMSEIGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAIL 886
            ++D+++++ + G++  + +   + + ++AYHE GHA+ GT T G D V K+T++PRG  A G T+ IP DD  ++++QQL A +   L GRAAE V FG  EV+TGA  D+ + T + ++M+T +GMSE      +    +G +    +AR   SE   + +D  V R+    Y   ++ +   +E ++ I   LLE+ET+  DEF  ++
Sbjct:  372 DLDEAVEKTMIGLQKKSRVIREEERRIIAYHETGHALAGTFTKGADKVHKITIIPRGTSALGYTFHIPEDDRHIVTEQQLLAEVDVLLSGRAAEFVAFG--EVSTGAGNDISRATDIVRKMITDYGMSEKFQNVALTRRGTGYLAEPQLAR-EYSECTQQYVDEEVARVLAERYRAVVALLTEKKELLEYIATRLLERETIERDEFEEVI 578          
BLAST of CV885252 vs. ExPASy Swiss-Prot
Match: FTSH9_ORYSJ (Cell division protease ftsH homolog 9, chloroplastic/mitochondrial OS=Oryza sativa subsp. japonica GN=FTSH9 PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.323e-28
Identity = 83/232 (35.78%), Postives = 119/232 (51.29%), Query Frame = -3
Query:  242 EIDDSIDRIVAGMEGTVM--TDGKSKS--------------LVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQITGLAKQMVTTFGMSE-IGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILSEFVEIP 886
            +++ + DRI+ G E   M  +D   K+              L AYHE GHAI    T G  P+ K T++PRG A G+   +PS D T ISK+QL AR+   +GGR AEE+IFGE  VTTGA  DL   T LA+ MV+  GMS+ IGP               +  +   S ++   IDA V +L   AY      ++ + + +  +   LLE+ET++ DE   ++  + E P
Sbjct:  556 QLEFAKDRIIMGTERKSMFISDESKKACLFKLLYFILRELILTAYHESGHAIVALNTQGAHPIHKATILPRGSALGMVTQLPSQDETSISKKQLLARLDVCMGGRVAEELIFGEDNVTTGARNDLHTATELAQYMVSNCGMSDAIGP---------------VHVKERPSVEMQSRIDAEVVKLLREAYGRVKRLLKKHEKQLHALANALLERETLTADEINKVVHPYQEEP 772          
BLAST of CV885252 vs. ExPASy Swiss-Prot
Match: FTSH4_ORYSJ (Cell division protease ftsH homolog 4, mitochondrial OS=Oryza sativa subsp. japonica GN=FTSH4 PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 7.260e-27
Identity = 75/212 (35.38%), Postives = 119/212 (56.13%), Query Frame = -3
Query:  257 EIDDSIDRIVAGME--GTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQITGLAKQMVTTFGMSEIGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILSE 886
            +++ + DRI+ G E    V++D +S+ L AYHE GHA+    T G  PV K T+VPRG+  G+   +P  D T  S++Q+ A +   + GR AEE+IFG+ EVT+GA+ D Q  T +A+ MVT +GMS+   +   +    G          SMS +    I+  VK L + AY  A + +  + +    + + LLE ET++G + + IL++
Sbjct:  452 DLEYAKDRIMMGSERKSAVISD-ESRKLTAYHEGGHALVAIHTEGARPVHKATIVPRGRTLGMVSQLPEKDETSFSRKQMLAWLDVSMAGRVAEELIFGDSEVTSGASSDFQNATKMARAMVTKYGMSKQLGFVSYNYEDDG---------KSMSTETRLLIEQEVKSLLENAYNNAKTILTKHSKEHHVLAQALLEHETLTGAQIKKILAQ 653          
BLAST of CV885252 vs. ExPASy Swiss-Prot
Match: RCA1_YEAST (Mitochondrial respiratory chain complexes assembly protein RCA1 OS=Saccharomyces cerevisiae GN=RCA1 PE=1 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 8.027e-26
Identity = 69/210 (32.86%), Postives = 119/210 (56.67%), Query Frame = -3
Query:  257 DDSIDRIVAGMEG-TVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQ-ARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQITGLAKQMVTTFGMSEIGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILSE 880
            + +I+R++ G+E  + +   + K +VAYHE GHA+CG      DP+ KV+++PRGQ A G   ++P  D  L+++QQL  R+   LGGR +EE+ F  P VT+GA+ D +++T +A  MVT  GMS+   W         D+          S++  + ID+ V R+    ++     ++   E ++KI +VLL+KE ++ ++   +L +
Sbjct:  585 EQAIERVIGGVERKSKLLSPEEKKVVAYHEAGHAVCGWYLKYADPLLKVSIIPRGQGALGYAQYLPG-DIFLLTEQQLKDRMTMSLGGRVSEELHF--PSVTSGASDDFKKVTSMATAMVTELGMSDKIGWVNYQKRDDSDL------TKPFSDETGDIIDSEVYRIVQECHDRCTKLLKEKAEDVEKIAQVLLKKEVLTREDMIDLLGK 785          
BLAST of CV885252 vs. ExPASy Swiss-Prot
Match: AFG3_YEAST (Mitochondrial respiratory chain complexes assembly protein AFG3 OS=Saccharomyces cerevisiae GN=AFG3 PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.369e-25
Identity = 75/209 (35.89%), Postives = 116/209 (55.50%), Query Frame = -3
Query:  263 DDSIDRIVAGMEG-TVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQ-ARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQITGLAKQMVTTFGMS-EIGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAIL 880
            + +I+R++AG+E  T +   + K  VAYHE GHA+CG      DP+ KV+++PRGQ A G   ++P D   LIS++Q   R++  LGGR +EE+ F  P VT+GA  D +++T +A  MVT+ GMS +IG  S      +  V          S K A  ID  VK + D A+      +  N + +D + + LL KE ++ ++   +L
Sbjct:  530 EQAIERVIAGLEKKTRVLSKEEKRSVAYHEAGHAVCGWFLKYADPLLKVSIIPRGQGALGYAQYLPPDQ-YLISEEQFRHRMIMALGGRVSEELHF--PSVTSGAHDDFKKVTQMANAMVTSLGMSPKIGYLSFDQNDGNFKV------NKPFSNKTARTIDLEVKSIVDDAHRACTELLTKNLDKVDLVAKELLRKEAITREDMIRLL 729          
The following BLAST results are available for this feature:
BLAST of CV885252 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
FTSH_MYCLE2.666e-2933.79Cell division protease ftsH homolog OS=Mycobacteri... [more]
FTSH5_ORYSJ3.482e-2936.79Cell division protease ftsH homolog 5, mitochondri... [more]
FTSH_HELFE4.547e-2934.43Cell division protease ftsH homolog OS=Helicobacte... [more]
FTSH_HELPY5.939e-2934.91Cell division protease ftsH homolog OS=Helicobacte... [more]
YME1_CAEEL1.013e-2834.74Protein YME1 homolog OS=Caenorhabditis elegans GN=... [more]
FTSH_TREPA1.013e-2834.29Cell division protease ftsH homolog OS=Treponema p... [more]
FTSH9_ORYSJ1.323e-2835.78Cell division protease ftsH homolog 9, chloroplast... [more]
FTSH4_ORYSJ7.260e-2735.38Cell division protease ftsH homolog 4, mitochondri... [more]
RCA1_YEAST8.027e-2632.86Mitochondrial respiratory chain complexes assembly... [more]
AFG3_YEAST1.369e-2535.89Mitochondrial respiratory chain complexes assembly... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_013E11_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_013_T7_E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885252 ID=CV885252; Name=CV885252; organism=Citrus sinensis; type=EST; length=888bp
TTTTTTTTACGCTGAGATTTTATGCTTCAAAAATCAGGAGCAAAACTTTA
GAAATTTACTCAATCGTGACTTTTTGAGTTAGTGTACAATCCTACTTACA
TTTGATCAAGAACACATATATTATACATTCAAGTGTATGCGTTCAAAGAG
TGGCTGAAATTTCAAGTATGGATAATATTAATGCCACTCAAACAGATACA
GATAATGGTGCTGGAACAGCTGGAGGGACCCTATTTTCAGCTGGGATTTC
GACAAACTCTGAGAGGATTGCCCGGAATTCATCCCCTGACATTGTTTCCT
TCTCAAGAAGAACTTCCACGATCTTGTCAATGGCTTCACGGTTGTTCCTT
ATTTGGCTCAACGCAATCTCATAGGCACGGTCTGATAGTCTCTTGACTGC
AGCATCAATGTCTTCAGCAAGCTTCTCAGACATTGAGTTCCTTGCCATCA
TTCTCATGATGACATCACCACTTTGTGATCCGTCCATGAGCGACCATGGG
CCAATTTCAGACATTCCAAATGTGGTTACCATCTGTTTGGCCAAACCAGT
GATCTGCTGCAAATCACCAGCTGCTCCTGTTGTCACTTCAGGCTCTCCAA
AAATCACTTCCTCAGCAGCTCTACCACCGAGTCCACCAACAATTCTTGCA
AAGAGCTGCTGCTTCGATATCAAGGTGGGGTCATCTGAAGGGATGAACCA
GGTAAGACCTCTTGCCTGACCACGTGGAACAAGGGTGACTTTTTGAACGG
GATCGTGTCCTGGAGTCAAAGTTCCGCATATTGCGTGGCCAACTTCATGG
TATGCAACAAGACTTTTACTCTTCCCATCTGTCATGACAGTTCCTTCCAT
TCCAGCCACAATCCTATCAATCGAATCATCAATCTCTT
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