CV885246
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CV885246 vs. ExPASy Swiss-Prot
Match: TF2B2_HALSA (Transcription initiation factor IIB 2 OS=Halobacterium salinarium GN=tfbB PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 3.326e-14 Identity = 53/188 (28.19%), Postives = 94/188 (50.00%), Query Frame = -3 Query: 362 RGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNXXXXXXXXXXXKSEEFDIR--RSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDL 919 R L A I M+ LGL +++ A+ IY++ + GR+ + + A LY + RQ PR++ E+ +V+ + E R YIV++L S+E+ ++ RF S+L + + ++ + +SP+ +AAA IY + L++ K ++S T V+E TIRN Y++L Sbjct: 137 RNLKQALGEIERMASALGLPKEVRETASVIYRRALSEDLLPGRSIEGVATAALYASARQLSTPRSIDEVANVSR-IDEMEFKRTYRYIVREL------SLEVAPADPAQYVPRFASDLDLPDEVERRSRELISNAQADGVTSGKSPVGLAAAAIYASSLLTNHKVTQSEVSEVTDVSEVTIRNRYQEL 317
BLAST of CV885246 vs. ExPASy Swiss-Prot
Match: TF2B_YEAST (Transcription initiation factor IIB OS=Saccharomyces cerevisiae GN=SUA7 PE=1 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 5.674e-14 Identity = 60/198 (30.30%), Postives = 93/198 (46.97%), Query Frame = -3 Query: 338 AFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQL-------GLETGQSVEMGTIHAGDFMRRFCSNLGMNNXXXXXXXXXXXKSEEFD--IRRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKII 904 AF I + D L +KD A E YK D+K+ +G++ ++++AA + I CR+ + RT KEI S+ + T KE G+ I+K + G + M ++ RFCS+LG+ K +E +SPI+IA IY+ L + V EGTI++ YK LY H K++ Sbjct: 129 AFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEVARTFKEIQSLIHVKT-KEFGKTLN-IMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLPMQVTTSAEYTAKKCKEIKEIAGKSPITIAVVSIYLNILLFQIPITAAKVGQTLQVTEGTIKSGYKILYEHRDKLV 324
BLAST of CV885246 vs. ExPASy Swiss-Prot
Match: TF2B_PYROC (Transcription initiation factor IIB OS=Pyrodictium occultum GN=tfb PE=3 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 5.674e-14 Identity = 54/192 (28.12%), Postives = 94/192 (48.96%), Query Frame = -3 Query: 335 AFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNXXXXXXXXXXXKSEEFDIR--RSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKIIP 904 A + I + + L L I D A IY++ ++ RGR+ +++ AA +Y ACR PR++ +I V G +KE+ R IV++L L M + ++ R S L ++ ++ + + + P +AAA IYI +++ K+I+ A GV E T+RN YK+L ++ +P Sbjct: 124 AAREITRLVEALNLPRGIIDTAMMIYRQAAEKGLVRGRSLESMAAAAVYAACRIRGIPRSIDDIAEVVKGG-RKEVARCYRLIVRELKL------RMPIVDPVRYVSRIVSALRLSPAVERRAAEILVQARKMGLTAGKDPAGLAAAAIYIAALELGERRTQKEIAAAAGVTEVTVRNRYKELVQKLNIPLP 308
BLAST of CV885246 vs. ExPASy Swiss-Prot
Match: TF2B_MIMIV (Putative transcription initiation factor IIB-like protein OS=Acanthamoeba polyphaga mimivirus GN=MIMI_L250 PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 7.668e-11 Identity = 52/210 (24.76%), Postives = 91/210 (43.33%), Query Frame = -3 Query: 338 RGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSS-----------RGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAG---DFMRRFCSNLGMNNXXXXXXXXXXXKSEEFDIR--RSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKII 919 R L F+ I+T+ + + I D A +YKK+ D K RG N+ +++AAC+Y AC PRTVKEI G +K++ + + K + + + +++ D++RR C L +N + +P SIAA I ++ + + IS G+++ TI YK + P+ ++ Sbjct: 237 RSLNDVFEKISTICSKSNIPRIIADTAKILYKKLSDCKHKSGNNVGKQIIIRGHNRISIIAACIYKACEMNKNPRTVKEIARFF-GIDEKKVTKGNKQFEKIMKNTDDNMIILDPVNSNSTEDYIRRHCPRLKVNKDHTDIAVKISNNCCRMKLASDHNPQSIAAGAILVMVVFCELNIDKRKISRLFGISDVTIDKIYKKIAPYAPALV 445 The following BLAST results are available for this feature:
BLAST of CV885246 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 64
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Sequences
The
following sequences are available for this feature:
EST sequence >CV885246 ID=CV885246; Name=CV885246; organism=Citrus sinensis; type=EST; length=921bpback to top |