CV885246

Overview
NameCV885246
Unique NameCV885246
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length921
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV885246 vs. ExPASy Swiss-Prot
Match: TF2B2_HALSA (Transcription initiation factor IIB 2 OS=Halobacterium salinarium GN=tfbB PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.326e-14
Identity = 53/188 (28.19%), Postives = 94/188 (50.00%), Query Frame = -3
Query:  362 RGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNXXXXXXXXXXXKSEEFDIR--RSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDL 919
            R L  A   I  M+  LGL   +++ A+ IY++   +    GR+ + +  A LY + RQ   PR++ E+ +V+    + E  R   YIV++L      S+E+       ++ RF S+L + +            ++   +   +SP+ +AAA IY  + L++ K    ++S  T V+E TIRN Y++L
Sbjct:  137 RNLKQALGEIERMASALGLPKEVRETASVIYRRALSEDLLPGRSIEGVATAALYASARQLSTPRSIDEVANVSR-IDEMEFKRTYRYIVREL------SLEVAPADPAQYVPRFASDLDLPDEVERRSRELISNAQADGVTSGKSPVGLAAAAIYASSLLTNHKVTQSEVSEVTDVSEVTIRNRYQEL 317          
BLAST of CV885246 vs. ExPASy Swiss-Prot
Match: TF2B_YEAST (Transcription initiation factor IIB OS=Saccharomyces cerevisiae GN=SUA7 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.674e-14
Identity = 60/198 (30.30%), Postives = 93/198 (46.97%), Query Frame = -3
Query:  338 AFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQL-------GLETGQSVEMGTIHAGDFMRRFCSNLGMNNXXXXXXXXXXXKSEEFD--IRRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKII 904
            AF  I  + D   L   +KD A E YK   D+K+ +G++ ++++AA + I CR+ +  RT KEI S+ +  T KE G+    I+K +       G     +  M       ++ RFCS+LG+             K +E      +SPI+IA   IY+   L         +     V EGTI++ YK LY H  K++
Sbjct:  129 AFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEVARTFKEIQSLIHVKT-KEFGKTLN-IMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLPMQVTTSAEYTAKKCKEIKEIAGKSPITIAVVSIYLNILLFQIPITAAKVGQTLQVTEGTIKSGYKILYEHRDKLV 324          
BLAST of CV885246 vs. ExPASy Swiss-Prot
Match: TF2B_PYROC (Transcription initiation factor IIB OS=Pyrodictium occultum GN=tfb PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.674e-14
Identity = 54/192 (28.12%), Postives = 94/192 (48.96%), Query Frame = -3
Query:  335 AFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNXXXXXXXXXXXKSEEFDIR--RSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKIIP 904
            A + I  + + L L   I D A  IY++  ++   RGR+ +++ AA +Y ACR    PR++ +I  V  G  +KE+ R    IV++L L       M  +    ++ R  S L ++            ++ +  +   + P  +AAA IYI      +++  K+I+ A GV E T+RN YK+L   ++  +P
Sbjct:  124 AAREITRLVEALNLPRGIIDTAMMIYRQAAEKGLVRGRSLESMAAAAVYAACRIRGIPRSIDDIAEVVKGG-RKEVARCYRLIVRELKL------RMPIVDPVRYVSRIVSALRLSPAVERRAAEILVQARKMGLTAGKDPAGLAAAAIYIAALELGERRTQKEIAAAAGVTEVTVRNRYKELVQKLNIPLP 308          
BLAST of CV885246 vs. ExPASy Swiss-Prot
Match: TF2B_MIMIV (Putative transcription initiation factor IIB-like protein OS=Acanthamoeba polyphaga mimivirus GN=MIMI_L250 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.668e-11
Identity = 52/210 (24.76%), Postives = 91/210 (43.33%), Query Frame = -3
Query:  338 RGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSS-----------RGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAG---DFMRRFCSNLGMNNXXXXXXXXXXXKSEEFDIR--RSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKII 919
            R L   F+ I+T+  +  +   I D A  +YKK+ D K             RG N+ +++AAC+Y AC     PRTVKEI     G  +K++ +  +   K +       + +  +++    D++RR C  L +N                  +    +P SIAA  I ++    +     + IS   G+++ TI   YK + P+   ++
Sbjct:  237 RSLNDVFEKISTICSKSNIPRIIADTAKILYKKLSDCKHKSGNNVGKQIIIRGHNRISIIAACIYKACEMNKNPRTVKEIARFF-GIDEKKVTKGNKQFEKIMKNTDDNMIILDPVNSNSTEDYIRRHCPRLKVNKDHTDIAVKISNNCCRMKLASDHNPQSIAAGAILVMVVFCELNIDKRKISRLFGISDVTIDKIYKKIAPYAPALV 445          
The following BLAST results are available for this feature:
BLAST of CV885246 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
TF2B2_HALSA3.326e-1428.19Transcription initiation factor IIB 2 OS=Halobacte... [more]
TF2B_YEAST5.674e-1430.30Transcription initiation factor IIB OS=Saccharomyc... [more]
TF2B_PYROC5.674e-1428.13Transcription initiation factor IIB OS=Pyrodictium... [more]
TF2B_MIMIV7.668e-1124.76Putative transcription initiation factor IIB-like ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_013E08_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_013_T7_E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885246 ID=CV885246; Name=CV885246; organism=Citrus sinensis; type=EST; length=921bp
TGTAATAAATTAAGCATAAATTGAAAAATAAACTTGTATTAGCTCCTCTC
TGTCTCTCTCCCCCTTCTCTCTGTCTCTCTCTCTTCACTTTTTTTGACTT
TTTGTCAATATTTGTAAATTAAAGGTTGCAATGCAGTCAACTGCACAAAG
ACAAAACAGTCAAGAAAATAAGTACGAAAATCCTCGTAAATAGGATGCTG
ACAGATTCTGAATACATCAACGTGAGGGCAGTTCAAACCACTCAAGATGC
TTGTTTCACGGTGTTGTTATTCATGCGCTCTACATTTTACGGGCTGCAAA
GGTTTTTAAGATCCTCTTCCTTGGCATACCAGTTTGGTATTATCTTTGAG
ACATGAGGATAAAGATCCTTGTACGAATTTCTGATTGTCCCCTCAGCAAC
TCCAGTAGCAACAGAAATATCTTTGAGCGGCTTCTTGTCATCTGAAAGCT
GAGTTATAATATAAATAACTGCAGCTGCAATTGATATTGGGCTCCTCCTT
ATATCAAACTCCTCGGACTTCTGAACAGCTTCTTGGGCAGCTTTAACAGC
TTGATTATTCATACCCAAATTGGAACAGAAGCGCCTCATAAAGTCCCCAG
CATGTATAGTTCCCATCTCCACTGACTGACCAGTCTCCAAACCCAGCTGT
TTCACAATGTATTCTTTTGCTCGGCCAATTTCCTTCTTTGTAGCTCCATT
GGCGACAGAGCAGATTTCCTTAACAGTGCGTGGCTTGTCTTCTTGTCGAC
AAGCAATGTACAGGCAAGCAGCCAATAATGCGTCTTGATTTCTGCCTCTA
CTAGACTTTTGATCTTCCACCTTCTTATATATCTCATTTGCCCGATCCTT
AATGGTTGCAACGAGGCCTAACCTATCAGACATGGTAGCAATTGTTTTAA
AAGCCAAAATCAAGCCGCGAT
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