CV885245

Overview
NameCV885245
Unique NameCV885245
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length898
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV885245 vs. ExPASy Swiss-Prot
Match: TF2B_BOVIN (Transcription initiation factor IIB OS=Bos taurus GN=GTF2B PE=2 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 2.621e-48
Identity = 110/216 (50.93%), Postives = 141/216 (65.28%), Query Frame = 1
Query:  196 CKKHTEVVF--DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNL 831
            C  H + +   D+ AGD +C ECGLV+    ID  SEWRTF+N+    DP RVG   NPLL+DG LST+I K  GA+  F      ++QNR   S+ DR ++ AFK I TM+DR+ L   I DR N ++K+V +QKS +GR  DA+ +ACLYIACRQE  PRT KEIC+V+   +KKEIGR  + I+K   LET  SV++  I  GDFM RFCSNL
Sbjct:   15 CPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPLLSDGDLSTMIGKGTGAAS-FDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILK--ALET--SVDL--ITTGDFMSRFCSNL 222          
BLAST of CV885245 vs. ExPASy Swiss-Prot
Match: TF2B_XENLA (Transcription initiation factor IIB OS=Xenopus laevis GN=gtf2b PE=2 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 5.840e-48
Identity = 109/238 (45.80%), Postives = 143/238 (60.08%), Query Frame = 1
Query:  196 CKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNXXXXXXXXXXXXSEEVDI 897
            C  H +  +V D+ AGD +CSECGLV+    ID  SEWRTF+N+    DP RVG   NPLL+ G L+T+I K  G S  F      ++QNR   S+ DR ++ AFK I  MSDR+ L   I DR N ++K+V +QKS +GR+ DA+ +ACLYIACRQE  PRT KEIC+V+   +KKEIGR  + I+K L         +  I  GDFM RFCSNLG+              + E+D+
Sbjct:   15 CPNHPDALLVEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNDKAAADPSRVGDAQNPLLSGGDLTTMIGKGTG-SASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITNMSDRINLPRNIIDRTNNLFKQVYEQKSLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILKAL------ETNVDLITTGDFMSRFCSNLGLTKQVQMAATHIARKAVELDL 244          
BLAST of CV885245 vs. ExPASy Swiss-Prot
Match: TF2B_CAEEL (Transcription initiation factor IIB OS=Caenorhabditis elegans GN=ttb-1 PE=2 SV=2)

HSP 1 Score: 173.326 bits (438), Expect = 1.646e-42
Identity = 99/219 (45.21%), Postives = 130/219 (59.36%), Query Frame = 1
Query:  196 CKKHTEV--VFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRG-SNPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNN 843
            C  H +V  + DH AGD VC  CGLV+    +D  +EWR+F+NE   NDP RVG P NPLL+ G LST IA   G  G    +SL   Q +  +N DR +  A   I  MS+R+ L   I+D A+ I+K V + K+ RG+N +A  AACLYIACR++  PRT KEIC+V+   +KKEIGR  + IV+ L         +  I + DFM RFC NL + N
Sbjct:    7 CPIHPDVHLIEDHRAGDLVCPACGLVVGDRLVDVGTEWRSFSNERSGNDPSRVGAPENPLLSGGDLSTTIAV--GFGGSDSDNSLANAQRKSMNNTDRQMTAAMSLIREMSERIHLPRNIQDSASRIFKDVLESKALRGKNNEAQAAACLYIACRKDGVPRTFKEICAVSR-VSKKEIGRCFKIIVRSL------ETNLEQITSADFMSRFCGNLSLPN 216          
BLAST of CV885245 vs. ExPASy Swiss-Prot
Match: TF2B_DICDI (Transcription initiation factor IIB OS=Dictyostelium discoideum GN=gtf2b PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.820e-41
Identity = 101/225 (44.89%), Postives = 142/225 (63.11%), Query Frame = 1
Query:  184 FCSDCK-KHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN-ESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGS--NPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSV-EMGTIHAGDFMRRFCSNLGMNN 843
            +C  C+ +  +++ D++ GD +C  CG+V+    +DE SEWRTF+N ES   DP RVGGP NPLL D  LST + K +  SG     +L R QN+ +    DR L+ AFK I  M+D + L  T++DRANE+++ ++D+KS++GR+ D ++AA LYIACRQE   RT KEI ++ N   KKEI R  + I+K    ET  SV  + TI + DF  RFCS L + N
Sbjct:   22 WCMVCRIQDPDIIEDYAKGDLICRGCGVVVGDRIVDEHSEWRTFSNSESTGADPNRVGGPINPLLRDSALSTTVGKGSKDSG-----TLTRLQNKSALGTGDRNLLAAFKEIGRMADHMNLPQTVQDRANELFRFMDDKKSTKGRSVDGMVAAALYIACRQEHLSRTFKEIAALTN-VPKKEISRCYK-IMK----ETFASVLNLQTISSEDFTSRFCSTLKLPN 235          
BLAST of CV885245 vs. ExPASy Swiss-Prot
Match: TF2B_SCHPO (Transcription initiation factor IIB OS=Schizosaccharomyces pombe GN=sua7 PE=2 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 4.638e-37
Identity = 92/229 (40.17%), Postives = 132/229 (57.64%), Query Frame = 1
Query:  187 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN-ESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRW-QNRGSNPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQL-----------GLETGQSVEMGTIHAGDFMRRFCSNL 831
            CS+C++    +V + S+GDTVC  CGLVL    ID  SEWRTF+N +    DP RVG   NPLL    L T I+  +GA G  L+ + GR  Q RG   ++ L+ A+K I  M D + L   I D A ++YK+V+D K+ +G++  +++AAC+YIACRQ   PRT  EIC++ N   KKEIGR  + + + L            L+  + ++  +  A D M RFC+ L
Sbjct:   20 CSECREDPPNLVEEFSSGDTVCGSCGLVLGDRIIDTRSEWRTFSNSDEASGDPSRVGKVANPLLNGSQLDTTISSYDGA-GAMLAKAQGRSVQVRG---EKNLLTAYKEIGAMCDAISLPKVIADTAKQLYKRVDDHKALKGKSSQSIIAACIYIACRQGKVPRTFMEICTLTN-VPKKEIGRVYKTLQRMLTEGGALHNSVDALKGHEYIQSSSTSAEDLMVRFCNRL 243          
BLAST of CV885245 vs. ExPASy Swiss-Prot
Match: TF2B_DROVI (Transcription initiation factor IIB OS=Drosophila virilis GN=TfIIB PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.762e-36
Identity = 102/238 (42.86%), Postives = 136/238 (57.14%), Query Frame = 1
Query:  196 CKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGS--NPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNXXXXXXXXXXXXSEEVDI 897
            C  H E  ++ D+ AGD +CSECGLV+                  GD      GGP NPLL+ G LST+I  P   S  F +    ++ NR +  + DR LI AFK I++M+DR+ L  TI DRAN ++K+V D K+ +GR+ DA  +ACLYIACRQE  PRT KEIC+V+   +KKEIGR  +  +K   LET  SV++  I   DFM RFC+NL + N            + E+DI
Sbjct:   14 CYAHPESPLIEDYRAGDMICSECGLVV------------------GD----AFGGPENPLLSGGHLSTIIG-PGTGSASFDAFGAPKYPNRRTMRSSDRSLISAFKEISSMADRINLPKTIVDRANTLFKQVHDGKNLKGRSNDAKASACLYIACRQEGVPRTFKEICAVSK-ISKKEIGRCFKLTLK--ALET--SVDL--ITTADFMCRFCANLDLPNMVQRAATHIAKKAVEMDI 221          
BLAST of CV885245 vs. ExPASy Swiss-Prot
Match: TF2B_ENCCU (Transcription initiation factor IIB OS=Encephalitozoon cuniculi GN=ECU06_1100i PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 6.269e-34
Identity = 85/218 (38.99%), Postives = 120/218 (55.05%), Query Frame = 1
Query:  187 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMN 840
            CSDC +   +V D+  G  VC  CG ++ +  IDE SEWR+F  +S   DP R+G  +NP L    L T+I+   G +   LS    +   RG  P+R L      I    +R  L  TI DRA+ I+K +E++K  +G+N + ++AAC+YIACRQE+ PRT KEI SV     K+EIGR  + I   L         M T+   + + RFCS+L +N
Sbjct:   14 CSDCGETQNIVEDYKNGYHVCGRCGCIVGNRIIDEGSEWRSFG-DSNKVDPCRIGSASNPYLESEQLDTMISTGGGMNSYVLSKIQMKNSMRG--PERALKHGMNLITAFCERSNLSRTIIDRAHYIFKNIEERKLLKGKNVEGIVAACIYIACRQEECPRTFKEI-SVMTAVQKREIGRCFKLISPHL-------ERMATMSTENIIARFCSDLNLN 220          
BLAST of CV885245 vs. ExPASy Swiss-Prot
Match: TF2B_KLULA (Transcription initiation factor IIB OS=Kluyveromyces lactis GN=SUA7 PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.551e-27
Identity = 80/231 (34.63%), Postives = 124/231 (53.68%), Query Frame = 1
Query:  187 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN-ESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETG---------QSVEMGTIHAGDFMRRFCSNLGMN 840
            C +CK +  +VV   S GD VC+ CGLVL    +D  SEWRTF+N +   +DP RVG  +NPLL    L+T I +  G+    ++  L R Q++      D  L  A+  I  M D   L   +KD A E YK   +++  +G++Q++++A+ + + CR+ +  R+ KEI S+ N   KKEIG+    I+K +  E            ++  G   A  F+ RFCS+LG++
Sbjct:   28 CPECKVYPPKVVERFSEGDIVCALCGLVLSDRIVDTRSEWRTFSNDDQNGDDPSRVGEASNPLLDGNHLTTRIGQAQGSDAR-VTRDLNRAQSKSIVDKKDNELQAAYAKITMMCDAAELPKIVKDCAKEAYKLCFEERVLKGKSQESIMASVILVGCRRAEVGRSFKEILSLTN-VRKKEIGKTFT-IIKNILREKNDRGFANIDTSNITTGQTSAETFIPRFCSHLGLS 255          
BLAST of CV885245 vs. ExPASy Swiss-Prot
Match: TF2B_ARCFU (Transcription initiation factor IIB OS=Archaeoglobus fulgidus GN=tfb PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 3.332e-27
Identity = 83/238 (34.87%), Postives = 125/238 (52.52%), Query Frame = 1
Query:  160 IEGEMTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNR---GSNPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMN 840
            IE E     C +C     ++ D+  G+ +C +CGLV+E   ID   EWR F +E  D    RVG P    + D GLST+I   N    G+ +S         L +WQ R    +  +R L  A   +  M+  LGL  ++++ A  IY+K  ++   RGR+ + ++AA LY ACRQ   PRT+ EI + +    +KEIGR   +I ++LGL+      M T  A D++ RFC+ LG++
Sbjct:   21 IEREEDVEVCPECGS-PRLIRDYRRGEFICQDCGLVIEDTYIDAGPEWRAFDSEQRDKRS-RVGAPVTYTIHDKGLSTIIDWSNKDYYGKAISVRNRAQLFRLRKWQRRIRISNATERNLAFALSELDRMASALGLPKSVRETAAVIYRKAVEKNLIRGRSIEGVVAAALYAACRQAGVPRTLDEIATYSR-VDRKEIGRTYRFITRELGLKL-----MPTSPA-DYIPRFCAALGLS 249          
BLAST of CV885245 vs. ExPASy Swiss-Prot
Match: TF2B_METMA (Transcription initiation factor IIB OS=Methanosarcina mazei GN=tfb PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.653e-26
Identity = 80/234 (34.19%), Postives = 122/234 (52.14%), Query Frame = 1
Query:  169 EMTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGAS-GEFLSSS-------LGRWQNR---GSNPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGM 837
            E   A C +C     +V D+   + VC +CGLV+++  +DE  EWR F ++       RVG P    + D GLST+I   N  S G+ +SS        L +WQ R    +  +R L  A   +  M+  LGL  T+++ A  +Y+K  D+   RGR+ + + AA LY ACRQ   PRT+ EI  V+   ++KEIGR   +I ++L L+   +  +      D++ RFCS L +
Sbjct:   35 ENEKAVCPECGSRN-LVHDYERAELVCGDCGLVIDADFVDEGPEWRAFDHDQRMKRS-RVGAPMTYTIHDKGLSTMIDWRNRDSYGKSISSKNRAQLYRLRKWQRRIRVSNATERNLAFALSELDRMASALGLPRTVRETAAVVYRKAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDEIEEVSR-VSRKEIGRTYRFISRELALKLMPTSPI------DYVPRFCSGLNL 259          
The following BLAST results are available for this feature:
BLAST of CV885245 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
TF2B_BOVIN2.621e-4850.93Transcription initiation factor IIB OS=Bos taurus ... [more]
TF2B_XENLA5.840e-4845.80Transcription initiation factor IIB OS=Xenopus lae... [more]
TF2B_CAEEL1.646e-4245.21Transcription initiation factor IIB OS=Caenorhabdi... [more]
TF2B_DICDI1.820e-4144.89Transcription initiation factor IIB OS=Dictyosteli... [more]
TF2B_SCHPO4.638e-3740.17Transcription initiation factor IIB OS=Schizosacch... [more]
TF2B_DROVI1.762e-3642.86Transcription initiation factor IIB OS=Drosophila ... [more]
TF2B_ENCCU6.269e-3438.99Transcription initiation factor IIB OS=Encephalito... [more]
TF2B_KLULA2.551e-2734.63Transcription initiation factor IIB OS=Kluyveromyc... [more]
TF2B_ARCFU3.332e-2734.87Transcription initiation factor IIB OS=Archaeoglob... [more]
TF2B_METMA1.653e-2634.19Transcription initiation factor IIB OS=Methanosarc... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_013E08_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_013_T3_E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885245 ID=CV885245; Name=CV885245; organism=Citrus sinensis; type=EST; length=898bp
CTCTTTCTTCCTCTCTTCATTTCTTCACCTAAAAAGTTTCGCACAACAAT
TCCACCGGAATCCCAAAGAACAGGGCTATAATATTAAATTAAAATTAAAA
ATTTAAATAATTTTAAAAAATTAAAAGAAGAAACGGAAATACGTAGGGGA
TTAAATTAAATCGAAGGGGAAATGACGGACGCCTTTTGCTCGGACTGCAA
GAAGCACACGGAGGTGGTGTTCGACCACTCGGCGGGGGACACGGTGTGCT
CGGAGTGCGGCCTCGTGTTGGAGTCGCACTCCATCGACGAGACCTCCGAG
TGGCGTACCTTCGCCAACGAATCCGGCGACAACGACCCCGTCCGTGTCGG
CGGCCCCACCAACCCGCTCCTGGCCGACGGCGGCCTCTCCACCGTCATCG
CCAAGCCTAATGGAGCTTCCGGAGAATTCTTGTCGTCGTCGCTCGGACGC
TGGCAGAATCGCGGCTCGAATCCGGATCGCGGCTTGATTTTGGCTTTTAA
AACAATTGCTACCATGTCTGATAGGTTAGGCCTCGTTGCAACCATTAAGG
ATCGGGCAAATGAGATATATAAGAAGGTGGAAGATCAAAAGTCTAGTAGA
GGCAGAAATCAAGACGCATTATTGGCTGCTTGCCTGTACATTGCTTGTCG
ACAAGAAGACAAGCCACGCACTGTTAAGGAAATCTGCTCTGTCGCCAATG
GAGCTACAAAGAAGGAAATTGGCCGAGCAAAAGAATACATTGTGAAACAG
CTGGGTTTGGAGACTGGTCAGTCAGTGGAGATGGGAACTATACATGCTGG
GGACTTTATGAGGCGCTTCTGTTCCAATTTGGGTATGAATAATCAAGCTG
TTAAAGCTGCCCAAGAAGCTGTTCAGAAGTCCGAGGAAGTTGATATAA
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