CV885245
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CV885245 vs. ExPASy Swiss-Prot
Match: TF2B_BOVIN (Transcription initiation factor IIB OS=Bos taurus GN=GTF2B PE=2 SV=1) HSP 1 Score: 192.586 bits (488), Expect = 2.621e-48 Identity = 110/216 (50.93%), Postives = 141/216 (65.28%), Query Frame = 1 Query: 196 CKKHTEVVF--DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNL 831 C H + + D+ AGD +C ECGLV+ ID SEWRTF+N+ DP RVG NPLL+DG LST+I K GA+ F ++QNR S+ DR ++ AFK I TM+DR+ L I DR N ++K+V +QKS +GR DA+ +ACLYIACRQE PRT KEIC+V+ +KKEIGR + I+K LET SV++ I GDFM RFCSNL Sbjct: 15 CPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPLLSDGDLSTMIGKGTGAAS-FDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILK--ALET--SVDL--ITTGDFMSRFCSNL 222
BLAST of CV885245 vs. ExPASy Swiss-Prot
Match: TF2B_XENLA (Transcription initiation factor IIB OS=Xenopus laevis GN=gtf2b PE=2 SV=1) HSP 1 Score: 191.43 bits (485), Expect = 5.840e-48 Identity = 109/238 (45.80%), Postives = 143/238 (60.08%), Query Frame = 1 Query: 196 CKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNXXXXXXXXXXXXSEEVDI 897 C H + +V D+ AGD +CSECGLV+ ID SEWRTF+N+ DP RVG NPLL+ G L+T+I K G S F ++QNR S+ DR ++ AFK I MSDR+ L I DR N ++K+V +QKS +GR+ DA+ +ACLYIACRQE PRT KEIC+V+ +KKEIGR + I+K L + I GDFM RFCSNLG+ + E+D+ Sbjct: 15 CPNHPDALLVEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNDKAAADPSRVGDAQNPLLSGGDLTTMIGKGTG-SASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITNMSDRINLPRNIIDRTNNLFKQVYEQKSLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILKAL------ETNVDLITTGDFMSRFCSNLGLTKQVQMAATHIARKAVELDL 244
BLAST of CV885245 vs. ExPASy Swiss-Prot
Match: TF2B_CAEEL (Transcription initiation factor IIB OS=Caenorhabditis elegans GN=ttb-1 PE=2 SV=2) HSP 1 Score: 173.326 bits (438), Expect = 1.646e-42 Identity = 99/219 (45.21%), Postives = 130/219 (59.36%), Query Frame = 1 Query: 196 CKKHTEV--VFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRG-SNPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNN 843 C H +V + DH AGD VC CGLV+ +D +EWR+F+NE NDP RVG P NPLL+ G LST IA G G +SL Q + +N DR + A I MS+R+ L I+D A+ I+K V + K+ RG+N +A AACLYIACR++ PRT KEIC+V+ +KKEIGR + IV+ L + I + DFM RFC NL + N Sbjct: 7 CPIHPDVHLIEDHRAGDLVCPACGLVVGDRLVDVGTEWRSFSNERSGNDPSRVGAPENPLLSGGDLSTTIAV--GFGGSDSDNSLANAQRKSMNNTDRQMTAAMSLIREMSERIHLPRNIQDSASRIFKDVLESKALRGKNNEAQAAACLYIACRKDGVPRTFKEICAVSR-VSKKEIGRCFKIIVRSL------ETNLEQITSADFMSRFCGNLSLPN 216
BLAST of CV885245 vs. ExPASy Swiss-Prot
Match: TF2B_DICDI (Transcription initiation factor IIB OS=Dictyostelium discoideum GN=gtf2b PE=3 SV=1) HSP 1 Score: 169.859 bits (429), Expect = 1.820e-41 Identity = 101/225 (44.89%), Postives = 142/225 (63.11%), Query Frame = 1 Query: 184 FCSDCK-KHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN-ESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGS--NPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSV-EMGTIHAGDFMRRFCSNLGMNN 843 +C C+ + +++ D++ GD +C CG+V+ +DE SEWRTF+N ES DP RVGGP NPLL D LST + K + SG +L R QN+ + DR L+ AFK I M+D + L T++DRANE+++ ++D+KS++GR+ D ++AA LYIACRQE RT KEI ++ N KKEI R + I+K ET SV + TI + DF RFCS L + N Sbjct: 22 WCMVCRIQDPDIIEDYAKGDLICRGCGVVVGDRIVDEHSEWRTFSNSESTGADPNRVGGPINPLLRDSALSTTVGKGSKDSG-----TLTRLQNKSALGTGDRNLLAAFKEIGRMADHMNLPQTVQDRANELFRFMDDKKSTKGRSVDGMVAAALYIACRQEHLSRTFKEIAALTN-VPKKEISRCYK-IMK----ETFASVLNLQTISSEDFTSRFCSTLKLPN 235
BLAST of CV885245 vs. ExPASy Swiss-Prot
Match: TF2B_SCHPO (Transcription initiation factor IIB OS=Schizosaccharomyces pombe GN=sua7 PE=2 SV=1) HSP 1 Score: 155.221 bits (391), Expect = 4.638e-37 Identity = 92/229 (40.17%), Postives = 132/229 (57.64%), Query Frame = 1 Query: 187 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN-ESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRW-QNRGSNPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQL-----------GLETGQSVEMGTIHAGDFMRRFCSNL 831 CS+C++ +V + S+GDTVC CGLVL ID SEWRTF+N + DP RVG NPLL L T I+ +GA G L+ + GR Q RG ++ L+ A+K I M D + L I D A ++YK+V+D K+ +G++ +++AAC+YIACRQ PRT EIC++ N KKEIGR + + + L L+ + ++ + A D M RFC+ L Sbjct: 20 CSECREDPPNLVEEFSSGDTVCGSCGLVLGDRIIDTRSEWRTFSNSDEASGDPSRVGKVANPLLNGSQLDTTISSYDGA-GAMLAKAQGRSVQVRG---EKNLLTAYKEIGAMCDAISLPKVIADTAKQLYKRVDDHKALKGKSSQSIIAACIYIACRQGKVPRTFMEICTLTN-VPKKEIGRVYKTLQRMLTEGGALHNSVDALKGHEYIQSSSTSAEDLMVRFCNRL 243
BLAST of CV885245 vs. ExPASy Swiss-Prot
Match: TF2B_DROVI (Transcription initiation factor IIB OS=Drosophila virilis GN=TfIIB PE=3 SV=1) HSP 1 Score: 153.295 bits (386), Expect = 1.762e-36 Identity = 102/238 (42.86%), Postives = 136/238 (57.14%), Query Frame = 1 Query: 196 CKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGS--NPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNXXXXXXXXXXXXSEEVDI 897 C H E ++ D+ AGD +CSECGLV+ GD GGP NPLL+ G LST+I P S F + ++ NR + + DR LI AFK I++M+DR+ L TI DRAN ++K+V D K+ +GR+ DA +ACLYIACRQE PRT KEIC+V+ +KKEIGR + +K LET SV++ I DFM RFC+NL + N + E+DI Sbjct: 14 CYAHPESPLIEDYRAGDMICSECGLVV------------------GD----AFGGPENPLLSGGHLSTIIG-PGTGSASFDAFGAPKYPNRRTMRSSDRSLISAFKEISSMADRINLPKTIVDRANTLFKQVHDGKNLKGRSNDAKASACLYIACRQEGVPRTFKEICAVSK-ISKKEIGRCFKLTLK--ALET--SVDL--ITTADFMCRFCANLDLPNMVQRAATHIAKKAVEMDI 221
BLAST of CV885245 vs. ExPASy Swiss-Prot
Match: TF2B_ENCCU (Transcription initiation factor IIB OS=Encephalitozoon cuniculi GN=ECU06_1100i PE=3 SV=1) HSP 1 Score: 144.821 bits (364), Expect = 6.269e-34 Identity = 85/218 (38.99%), Postives = 120/218 (55.05%), Query Frame = 1 Query: 187 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMN 840 CSDC + +V D+ G VC CG ++ + IDE SEWR+F +S DP R+G +NP L L T+I+ G + LS + RG P+R L I +R L TI DRA+ I+K +E++K +G+N + ++AAC+YIACRQE+ PRT KEI SV K+EIGR + I L M T+ + + RFCS+L +N Sbjct: 14 CSDCGETQNIVEDYKNGYHVCGRCGCIVGNRIIDEGSEWRSFG-DSNKVDPCRIGSASNPYLESEQLDTMISTGGGMNSYVLSKIQMKNSMRG--PERALKHGMNLITAFCERSNLSRTIIDRAHYIFKNIEERKLLKGKNVEGIVAACIYIACRQEECPRTFKEI-SVMTAVQKREIGRCFKLISPHL-------ERMATMSTENIIARFCSDLNLN 220
BLAST of CV885245 vs. ExPASy Swiss-Prot
Match: TF2B_KLULA (Transcription initiation factor IIB OS=Kluyveromyces lactis GN=SUA7 PE=3 SV=1) HSP 1 Score: 122.865 bits (307), Expect = 2.551e-27 Identity = 80/231 (34.63%), Postives = 124/231 (53.68%), Query Frame = 1 Query: 187 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN-ESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETG---------QSVEMGTIHAGDFMRRFCSNLGMN 840 C +CK + +VV S GD VC+ CGLVL +D SEWRTF+N + +DP RVG +NPLL L+T I + G+ ++ L R Q++ D L A+ I M D L +KD A E YK +++ +G++Q++++A+ + + CR+ + R+ KEI S+ N KKEIG+ I+K + E ++ G A F+ RFCS+LG++ Sbjct: 28 CPECKVYPPKVVERFSEGDIVCALCGLVLSDRIVDTRSEWRTFSNDDQNGDDPSRVGEASNPLLDGNHLTTRIGQAQGSDAR-VTRDLNRAQSKSIVDKKDNELQAAYAKITMMCDAAELPKIVKDCAKEAYKLCFEERVLKGKSQESIMASVILVGCRRAEVGRSFKEILSLTN-VRKKEIGKTFT-IIKNILREKNDRGFANIDTSNITTGQTSAETFIPRFCSHLGLS 255
BLAST of CV885245 vs. ExPASy Swiss-Prot
Match: TF2B_ARCFU (Transcription initiation factor IIB OS=Archaeoglobus fulgidus GN=tfb PE=3 SV=1) HSP 1 Score: 122.479 bits (306), Expect = 3.332e-27 Identity = 83/238 (34.87%), Postives = 125/238 (52.52%), Query Frame = 1 Query: 160 IEGEMTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNR---GSNPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMN 840 IE E C +C ++ D+ G+ +C +CGLV+E ID EWR F +E D RVG P + D GLST+I N G+ +S L +WQ R + +R L A + M+ LGL ++++ A IY+K ++ RGR+ + ++AA LY ACRQ PRT+ EI + + +KEIGR +I ++LGL+ M T A D++ RFC+ LG++ Sbjct: 21 IEREEDVEVCPECGS-PRLIRDYRRGEFICQDCGLVIEDTYIDAGPEWRAFDSEQRDKRS-RVGAPVTYTIHDKGLSTIIDWSNKDYYGKAISVRNRAQLFRLRKWQRRIRISNATERNLAFALSELDRMASALGLPKSVRETAAVIYRKAVEKNLIRGRSIEGVVAAALYAACRQAGVPRTLDEIATYSR-VDRKEIGRTYRFITRELGLKL-----MPTSPA-DYIPRFCAALGLS 249
BLAST of CV885245 vs. ExPASy Swiss-Prot
Match: TF2B_METMA (Transcription initiation factor IIB OS=Methanosarcina mazei GN=tfb PE=3 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 1.653e-26 Identity = 80/234 (34.19%), Postives = 122/234 (52.14%), Query Frame = 1 Query: 169 EMTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGAS-GEFLSSS-------LGRWQNR---GSNPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGM 837 E A C +C +V D+ + VC +CGLV+++ +DE EWR F ++ RVG P + D GLST+I N S G+ +SS L +WQ R + +R L A + M+ LGL T+++ A +Y+K D+ RGR+ + + AA LY ACRQ PRT+ EI V+ ++KEIGR +I ++L L+ + + D++ RFCS L + Sbjct: 35 ENEKAVCPECGSRN-LVHDYERAELVCGDCGLVIDADFVDEGPEWRAFDHDQRMKRS-RVGAPMTYTIHDKGLSTMIDWRNRDSYGKSISSKNRAQLYRLRKWQRRIRVSNATERNLAFALSELDRMASALGLPRTVRETAAVVYRKAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDEIEEVSR-VSRKEIGRTYRFISRELALKLMPTSPI------DYVPRFCSGLNL 259 The following BLAST results are available for this feature:
BLAST of CV885245 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 68
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Sequences
The
following sequences are available for this feature:
EST sequence >CV885245 ID=CV885245; Name=CV885245; organism=Citrus sinensis; type=EST; length=898bpback to top |