CV885235

Overview
NameCV885235
Unique NameCV885235
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length969
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV885235 vs. ExPASy Swiss-Prot
Match: TCPD_TAKRU (T-complex protein 1 subunit delta OS=Takifugu rubripes GN=cct4 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 5.393e-26
Identity = 63/163 (38.65%), Postives = 100/163 (61.35%), Query Frame = -1
Query:  469 SGCPS-GRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETV 954
            +GC S G+T +IV+RG     IEEAERS+HDA+ ++R   K   ++AGGGA ++E++  L + SR + G   + + +Y+ ALEVIP  L +NAG +    + +LR +HA   G+    G+++  GGI++     V +P +V I+A+  ATE    IL +D+ V
Sbjct:  374 TGCASPGKTVSIVVRGSNKLVIEEAERSIHDALCVIRCLVKKRALIAGGGAPEIELAVRLAEYSRTLGGMEAYCVRAYSDALEVIPSTLAENAGLNPISTVTELRNRHA--QGDKMA-GINVRKGGISNIMEELVVQPLLVSISALTLATETVRSILKIDDVV 533          
BLAST of CV885235 vs. ExPASy Swiss-Prot
Match: TCPG_SCHPO (T-complex protein 1 subunit gamma OS=Schizosaccharomyces pombe GN=cct3 PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 7.043e-26
Identity = 66/168 (39.29%), Postives = 98/168 (58.33%), Query Frame = -1
Query:  469 FYIF-SGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGA-PYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETV 966
            +Y F +GC + +  TI+LRG +   I E ER+L DA+ + R    +  +  GGGA +M +S  L +++R+I G +Q+   + A A+E+IPR L  N G +    L +LR KHA    EG   +G+D  TG + D     VWEP  VK+ +I  A E+ACL+L VD+ V
Sbjct:  357 YYTFLTGCKNPKACTILLRGPSKDIINEVERNLQDAMAVARNVFFHPKLSPGGGATEMAVSVRLAEKARSIEGVAQWPYRAVADAIEIIPRTLVQNCGANPIKALTELRAKHA----EGQHSFGIDGETGRVVDMHEYGVWEPEAVKLQSIKTAIESACLLLRVDDIV 520          
BLAST of CV885235 vs. ExPASy Swiss-Prot
Match: THSB_THEAC (Thermosome subunit beta OS=Thermoplasma acidophilum GN=thsB PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 9.198e-26
Identity = 64/162 (39.51%), Postives = 96/162 (59.26%), Query Frame = -1
Query:  469 SGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETV 954
            +GC + +  +I++RG  +  ++E ERS+ D++ +V  A ++    AGGGA   EI+  LR  ++ I G+ Q  I  +A A+E IPR L +NAG D  D+L KLR +HA        YG+++ TG I D   N V EP  V   AI +ATEAA +IL +D+ +
Sbjct:  362 TGCKNPKAVSILVRGETEHVVDEMERSITDSLHVVASALEDGAYAAGGGATAAEIAFRLRSYAQKIGGRQQLAIEKFADAIEEIPRALAENAGLDPIDILLKLRAEHA---KGNKTYGINVFTGEIEDMVKNGVIEPIRVGKQAIESATEAAIMILRIDDVI 520          
BLAST of CV885235 vs. ExPASy Swiss-Prot
Match: THSA_METTH (Thermosome subunit alpha OS=Methanobacterium thermoautotrophicum GN=thsA PE=3 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 1.201e-25
Identity = 66/161 (40.99%), Postives = 98/161 (60.87%), Query Frame = -1
Query:  469 CPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPY-GVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETV 948
            C   +  +I+LRG      EE ER+L DAI +V    ++  VVAGGGA ++EI++ LR+ +  I+G+ Q  ++++A ALE++P+ L +NAG D+ DVL  LR  H     E +PY G+D+  G I D     V EP  VK  AI +A EAA +IL +D+ +
Sbjct:  359 CRDPKAISIILRGSTKHVAEEMERALEDAIGVVASTLEDREVVAGGGAPEVEIARKLREYADTISGREQLAVSAFADALEIVPKTLAENAGLDSIDVLVDLRAAH-----EESPYMGIDVFDGNIVDMKEAGVIEPQRVKKQAIQSAAEAAEMILRIDDMI 514          
BLAST of CV885235 vs. ExPASy Swiss-Prot
Match: THSB_METTH (Thermosome subunit beta OS=Methanobacterium thermoautotrophicum GN=thsB PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 2.049e-25
Identity = 62/160 (38.75%), Postives = 97/160 (60.62%), Query Frame = -1
Query:  469 CPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETV 948
            C   +  TI++RG  +  + E ER++ DAI +V    ++  VVAGGGA ++EI+K L+  + +I+G+ Q  ++++A+ALE++P+ L +NAG D+ DVL  LR  H     E    G+D+  G I D     V EP  VK  AI +A EAA +IL +D+ +
Sbjct:  359 CKEPKAVTILVRGSTEHVVSEVERAIEDAIGVVAATVEDGKVVAGGGAPEIEIAKRLKDYADSISGREQLAVSAFAEALEIVPKTLAENAGLDSIDVLVDLRAAHE----ESTYMGIDVFDGKIVDMKEAGVIEPHRVKKQAIQSAAEAAEMILRIDDVI 514          
BLAST of CV885235 vs. ExPASy Swiss-Prot
Match: THSB_DESMO (Thermosome subunit beta (Fragment) OS=Desulfurococcus mobilis GN=thsB PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 2.049e-25
Identity = 60/161 (37.27%), Postives = 97/161 (60.25%), Query Frame = -1
Query:  487 RFYIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLIL 969
            +     GC + R+ +IV+RGG ++ ++EAERS+ DA+  V  A ++  V+ GGGA ++E++K++R+ +  + GK Q  I ++AKALE +   L +NAG D  D++ KLR  H     +G    +D+ TG + +     V EP  +  NAI A TEAA +I+
Sbjct:  343 KMVFIEGCKNPRSVSIVIRGGLERLVDEAERSIRDALSAVADALRDGKVIPGGGAAEIELAKHIRRLATRVGGKEQLAIEAFAKALEGLAVTLVENAGLDPIDMVMKLRAAH--EREDGKYLSIDLATGDLVNMREKGVIEPVSILANAIKAGTEAATIIM 501          
BLAST of CV885235 vs. ExPASy Swiss-Prot
Match: THS1_HALVO (Thermosome subunit 1 OS=Halobacterium volcanii GN=cct1 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 3.495e-25
Identity = 61/156 (39.10%), Postives = 98/156 (62.82%), Query Frame = -1
Query:  469 RTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETV 936
            ++ T++LRGG +  ++E ER++ D++ +VR   ++  V+ GGGA + E+S  LR+ + ++ G+ Q  + ++A+AL++IPR L +NAG D  D L  LR +H    GE A  G+D  TG + D     V EP  VK  AI +ATEAA +IL +D+ +
Sbjct:  368 KSVTLILRGGTEHVVDELERAIEDSLGVVRTTLEDGKVLPGGGAPETELSLQLREFADSVGGREQLAVEAFAEALDIIPRTLAENAGLDPIDSLVDLRSRH--DGGEFAA-GLDAYTGEVIDMEEEGVVEPLRVKTQAIESATEAAVMILRIDDVI 520          
BLAST of CV885235 vs. ExPASy Swiss-Prot
Match: TCPA_CAEEL (T-complex protein 1 subunit alpha OS=Caenorhabditis elegans GN=cct-1 PE=2 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 4.565e-25
Identity = 62/169 (36.69%), Postives = 104/169 (61.54%), Query Frame = -1
Query:  457 PSGRTAT-IVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHA----LPTGEGAPY-GVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNPK 945
            P  RTA+ I+LRG  D  ++E ERS+HD++ +VRR  ++  +VAGGGA++  +S +L   ++ ++ + Q  +  +A AL +IP+ L  NA  D+TD++ KLR  H+    +P  +   + G+D+  G I D+    + EPA+ K+ ++  ATEAA  IL +D+ +K  K
Sbjct:  370 PKSRTASSIILRGANDVMLDEMERSVHDSLCVVRRVLESKKLVAGGGAVETSLSLFLETYAQTLSSREQLAVAEFASALLIIPKVLASNAARDSTDLVTKLRAYHSKAQLIPQLQHLKWAGLDLEEGTIRDNKEAGILEPALSKVKSLKFATEAAITILRIDDLIKLDK 538          
BLAST of CV885235 vs. ExPASy Swiss-Prot
Match: TCPG_TETPY (T-complex protein 1 subunit gamma OS=Tetrahymena pyriformis PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 7.787e-25
Identity = 62/171 (36.26%), Postives = 92/171 (53.80%), Query Frame = -1
Query:  457 FYIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPY-GVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNPK 966
            F   + C +    +I+LRG +   + E ER+LHD + + +    N  +V GGGAI+ME+S +L + S +I G  Q    + A ALE IP+ L  N G D    + +LR KH     EG  + G++ N+G I D     VWEP  VK+     A E+AC++L +D+ V   K
Sbjct:  363 FTFMTECENPEACSIILRGASKDVLNEMERNLHDCLAVAKNIFVNPKLVPGGGAIEMEVSSHLEKISSSIEGLHQLPFRAVAYALEAIPKTLAQNCGVDVVRNITELRAKH---NQEGNKFIGIEGNSGKITDMGEANVWEPIAVKLQVYKTAIESACMLLRIDDVVSGLK 530          
BLAST of CV885235 vs. ExPASy Swiss-Prot
Match: THSB_THEK1 (Thermosome subunit beta OS=Thermococcus sp. (strain KS-1) GN=thsB PE=3 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 1.328e-24
Identity = 61/165 (36.97%), Postives = 97/165 (58.79%), Query Frame = -1
Query:  457 GCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNPK 951
            GC + +  TI++RGG +  ++E ER+L DA+ +V+   ++  +VA GGA ++E+S  L + ++ + GK Q  I ++A+AL+VIPR L +NAG D  + L K+   H     +G   GVD+  G  AD     V  P  V   AI +A+EAA +IL +D+ +   K
Sbjct:  365 GCKNPKAVTILIRGGTEHVVDEVERALEDAVKVVKDIVEDGKIVAAGGAPEIELSIRLDEYAKEVGGKEQLAIEAFAEALKVIPRTLAENAGLDPIETLVKVIAAH---KEKGPTIGVDVFEGEPADMLERGVIAPVRVPKQAIKSASEAAIMILRIDDVIAASK 526          
The following BLAST results are available for this feature:
BLAST of CV885235 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 148
Match NameE-valueIdentityDescription
TCPD_TAKRU5.393e-2638.65T-complex protein 1 subunit delta OS=Takifugu rubr... [more]
TCPG_SCHPO7.043e-2639.29T-complex protein 1 subunit gamma OS=Schizosacchar... [more]
THSB_THEAC9.198e-2639.51Thermosome subunit beta OS=Thermoplasma acidophilu... [more]
THSA_METTH1.201e-2540.99Thermosome subunit alpha OS=Methanobacterium therm... [more]
THSB_METTH2.049e-2538.75Thermosome subunit beta OS=Methanobacterium thermo... [more]
THSB_DESMO2.049e-2537.27Thermosome subunit beta (Fragment) OS=Desulfurococ... [more]
THS1_HALVO3.495e-2539.10Thermosome subunit 1 OS=Halobacterium volcanii GN=... [more]
TCPA_CAEEL4.565e-2536.69T-complex protein 1 subunit alpha OS=Caenorhabditi... [more]
TCPG_TETPY7.787e-2536.26T-complex protein 1 subunit gamma OS=Tetrahymena p... [more]
THSB_THEK11.328e-2436.97Thermosome subunit beta OS=Thermococcus sp. (strai... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_013E01_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_013_T7_E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885235 ID=CV885235; Name=CV885235; organism=Citrus sinensis; type=EST; length=969bp
GATAAATAAATAGTCAGTGTCAGATATGCCATCAAGGTTCTAAAAACAAA
AGAGGGTTCCATTTTTTTGGCAGCAAGGGCAAGAAGAAACCAAAGGTCAA
AAGAGTAGAAGAAAACCCATTTAACATAATTAAAACCACGGCCATAATTC
CACAATGGGACAAAACTATAGTCTCGTTGGCTCGTTGGCTTCACCAAACA
ACAACAAACGCAAATGGCATAACTGGCTGAGGGTAACCACCAGTCTGTTA
AATTTTCAATTACACTTGGAAACACAACATAGAGAGACTACAAAAGATGA
GGAAAATCTAATCGAATCAGCACCCCCAATTCACCATCAAAAAAGACATT
CAAGACTTGAAATATCGTAAGCTCATCGCCTGCGCATGCCCCTCCCACGA
CCACGCCCTCTGCCGCCCATGGCACTTGCGGCAGCTTCACCTTGTGCACT
TTCAGACTTAGGGTTCTTTACTGTCTCATCCACACTCAAGATAAGGCATG
CTGCCTCAGTAGCAGCATTTATAGCATTGATCTTGACAACTGCTGGCTCC
CAGACAAAGTTAGCAAATGAATCTGCAATTCCACCAGTGTTGATATCCAC
TCCATAAGGGGCACCCTCACCAGTTGGAAGCGCATGTTTCTGTCTTAATT
TATTCAGCACATCAGTAGCATCAAATCCAGCATTGTCACACAACTGGCGT
GGGATAACCTCGAGAGCTTTTGCATAAGAATTGATAAAAAACTGAGACTT
CCCGGCTATTGCGCGGGATTCCTGCCTCAAGTATTTACTTATCTCCATAT
CTATAGCACCACCACCAGCAACGACAGTGGAATTCTTCGTAGCTCTTCTA
ACAATCATAATTGCATCATGTAAACTCCTCTCGGCTTCTTCAATGAACTG
GTCAGCTCCACCACGAAGTACTATAGTAGCTGTCCTCCCTGATGGGCATC
CACTAAAGATATAAAACCT
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