CV885235
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CV885235 vs. ExPASy Swiss-Prot
Match: TCPD_TAKRU (T-complex protein 1 subunit delta OS=Takifugu rubripes GN=cct4 PE=2 SV=1) HSP 1 Score: 118.627 bits (296), Expect = 5.393e-26 Identity = 63/163 (38.65%), Postives = 100/163 (61.35%), Query Frame = -1 Query: 469 SGCPS-GRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETV 954 +GC S G+T +IV+RG IEEAERS+HDA+ ++R K ++AGGGA ++E++ L + SR + G + + +Y+ ALEVIP L +NAG + + +LR +HA G+ G+++ GGI++ V +P +V I+A+ ATE IL +D+ V Sbjct: 374 TGCASPGKTVSIVVRGSNKLVIEEAERSIHDALCVIRCLVKKRALIAGGGAPEIELAVRLAEYSRTLGGMEAYCVRAYSDALEVIPSTLAENAGLNPISTVTELRNRHA--QGDKMA-GINVRKGGISNIMEELVVQPLLVSISALTLATETVRSILKIDDVV 533
BLAST of CV885235 vs. ExPASy Swiss-Prot
Match: TCPG_SCHPO (T-complex protein 1 subunit gamma OS=Schizosaccharomyces pombe GN=cct3 PE=1 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 7.043e-26 Identity = 66/168 (39.29%), Postives = 98/168 (58.33%), Query Frame = -1 Query: 469 FYIF-SGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGA-PYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETV 966 +Y F +GC + + TI+LRG + I E ER+L DA+ + R + + GGGA +M +S L +++R+I G +Q+ + A A+E+IPR L N G + L +LR KHA EG +G+D TG + D VWEP VK+ +I A E+ACL+L VD+ V Sbjct: 357 YYTFLTGCKNPKACTILLRGPSKDIINEVERNLQDAMAVARNVFFHPKLSPGGGATEMAVSVRLAEKARSIEGVAQWPYRAVADAIEIIPRTLVQNCGANPIKALTELRAKHA----EGQHSFGIDGETGRVVDMHEYGVWEPEAVKLQSIKTAIESACLLLRVDDIV 520
BLAST of CV885235 vs. ExPASy Swiss-Prot
Match: THSB_THEAC (Thermosome subunit beta OS=Thermoplasma acidophilum GN=thsB PE=1 SV=1) HSP 1 Score: 117.857 bits (294), Expect = 9.198e-26 Identity = 64/162 (39.51%), Postives = 96/162 (59.26%), Query Frame = -1 Query: 469 SGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETV 954 +GC + + +I++RG + ++E ERS+ D++ +V A ++ AGGGA EI+ LR ++ I G+ Q I +A A+E IPR L +NAG D D+L KLR +HA YG+++ TG I D N V EP V AI +ATEAA +IL +D+ + Sbjct: 362 TGCKNPKAVSILVRGETEHVVDEMERSITDSLHVVASALEDGAYAAGGGATAAEIAFRLRSYAQKIGGRQQLAIEKFADAIEEIPRALAENAGLDPIDILLKLRAEHA---KGNKTYGINVFTGEIEDMVKNGVIEPIRVGKQAIESATEAAIMILRIDDVI 520
BLAST of CV885235 vs. ExPASy Swiss-Prot
Match: THSA_METTH (Thermosome subunit alpha OS=Methanobacterium thermoautotrophicum GN=thsA PE=3 SV=2) HSP 1 Score: 117.472 bits (293), Expect = 1.201e-25 Identity = 66/161 (40.99%), Postives = 98/161 (60.87%), Query Frame = -1 Query: 469 CPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPY-GVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETV 948 C + +I+LRG EE ER+L DAI +V ++ VVAGGGA ++EI++ LR+ + I+G+ Q ++++A ALE++P+ L +NAG D+ DVL LR H E +PY G+D+ G I D V EP VK AI +A EAA +IL +D+ + Sbjct: 359 CRDPKAISIILRGSTKHVAEEMERALEDAIGVVASTLEDREVVAGGGAPEVEIARKLREYADTISGREQLAVSAFADALEIVPKTLAENAGLDSIDVLVDLRAAH-----EESPYMGIDVFDGNIVDMKEAGVIEPQRVKKQAIQSAAEAAEMILRIDDMI 514
BLAST of CV885235 vs. ExPASy Swiss-Prot
Match: THSB_METTH (Thermosome subunit beta OS=Methanobacterium thermoautotrophicum GN=thsB PE=3 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 2.049e-25 Identity = 62/160 (38.75%), Postives = 97/160 (60.62%), Query Frame = -1 Query: 469 CPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETV 948 C + TI++RG + + E ER++ DAI +V ++ VVAGGGA ++EI+K L+ + +I+G+ Q ++++A+ALE++P+ L +NAG D+ DVL LR H E G+D+ G I D V EP VK AI +A EAA +IL +D+ + Sbjct: 359 CKEPKAVTILVRGSTEHVVSEVERAIEDAIGVVAATVEDGKVVAGGGAPEIEIAKRLKDYADSISGREQLAVSAFAEALEIVPKTLAENAGLDSIDVLVDLRAAHE----ESTYMGIDVFDGKIVDMKEAGVIEPHRVKKQAIQSAAEAAEMILRIDDVI 514
BLAST of CV885235 vs. ExPASy Swiss-Prot
Match: THSB_DESMO (Thermosome subunit beta (Fragment) OS=Desulfurococcus mobilis GN=thsB PE=3 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 2.049e-25 Identity = 60/161 (37.27%), Postives = 97/161 (60.25%), Query Frame = -1 Query: 487 RFYIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLIL 969 + GC + R+ +IV+RGG ++ ++EAERS+ DA+ V A ++ V+ GGGA ++E++K++R+ + + GK Q I ++AKALE + L +NAG D D++ KLR H +G +D+ TG + + V EP + NAI A TEAA +I+ Sbjct: 343 KMVFIEGCKNPRSVSIVIRGGLERLVDEAERSIRDALSAVADALRDGKVIPGGGAAEIELAKHIRRLATRVGGKEQLAIEAFAKALEGLAVTLVENAGLDPIDMVMKLRAAH--EREDGKYLSIDLATGDLVNMREKGVIEPVSILANAIKAGTEAATIIM 501
BLAST of CV885235 vs. ExPASy Swiss-Prot
Match: THS1_HALVO (Thermosome subunit 1 OS=Halobacterium volcanii GN=cct1 PE=2 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 3.495e-25 Identity = 61/156 (39.10%), Postives = 98/156 (62.82%), Query Frame = -1 Query: 469 RTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETV 936 ++ T++LRGG + ++E ER++ D++ +VR ++ V+ GGGA + E+S LR+ + ++ G+ Q + ++A+AL++IPR L +NAG D D L LR +H GE A G+D TG + D V EP VK AI +ATEAA +IL +D+ + Sbjct: 368 KSVTLILRGGTEHVVDELERAIEDSLGVVRTTLEDGKVLPGGGAPETELSLQLREFADSVGGREQLAVEAFAEALDIIPRTLAENAGLDPIDSLVDLRSRH--DGGEFAA-GLDAYTGEVIDMEEEGVVEPLRVKTQAIESATEAAVMILRIDDVI 520
BLAST of CV885235 vs. ExPASy Swiss-Prot
Match: TCPA_CAEEL (T-complex protein 1 subunit alpha OS=Caenorhabditis elegans GN=cct-1 PE=2 SV=2) HSP 1 Score: 115.546 bits (288), Expect = 4.565e-25 Identity = 62/169 (36.69%), Postives = 104/169 (61.54%), Query Frame = -1 Query: 457 PSGRTAT-IVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHA----LPTGEGAPY-GVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNPK 945 P RTA+ I+LRG D ++E ERS+HD++ +VRR ++ +VAGGGA++ +S +L ++ ++ + Q + +A AL +IP+ L NA D+TD++ KLR H+ +P + + G+D+ G I D+ + EPA+ K+ ++ ATEAA IL +D+ +K K Sbjct: 370 PKSRTASSIILRGANDVMLDEMERSVHDSLCVVRRVLESKKLVAGGGAVETSLSLFLETYAQTLSSREQLAVAEFASALLIIPKVLASNAARDSTDLVTKLRAYHSKAQLIPQLQHLKWAGLDLEEGTIRDNKEAGILEPALSKVKSLKFATEAAITILRIDDLIKLDK 538
BLAST of CV885235 vs. ExPASy Swiss-Prot
Match: TCPG_TETPY (T-complex protein 1 subunit gamma OS=Tetrahymena pyriformis PE=3 SV=1) HSP 1 Score: 114.775 bits (286), Expect = 7.787e-25 Identity = 62/171 (36.26%), Postives = 92/171 (53.80%), Query Frame = -1 Query: 457 FYIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPY-GVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNPK 966 F + C + +I+LRG + + E ER+LHD + + + N +V GGGAI+ME+S +L + S +I G Q + A ALE IP+ L N G D + +LR KH EG + G++ N+G I D VWEP VK+ A E+AC++L +D+ V K Sbjct: 363 FTFMTECENPEACSIILRGASKDVLNEMERNLHDCLAVAKNIFVNPKLVPGGGAIEMEVSSHLEKISSSIEGLHQLPFRAVAYALEAIPKTLAQNCGVDVVRNITELRAKH---NQEGNKFIGIEGNSGKITDMGEANVWEPIAVKLQVYKTAIESACMLLRIDDVVSGLK 530
BLAST of CV885235 vs. ExPASy Swiss-Prot
Match: THSB_THEK1 (Thermosome subunit beta OS=Thermococcus sp. (strain KS-1) GN=thsB PE=3 SV=2) HSP 1 Score: 114.005 bits (284), Expect = 1.328e-24 Identity = 61/165 (36.97%), Postives = 97/165 (58.79%), Query Frame = -1 Query: 457 GCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNPK 951 GC + + TI++RGG + ++E ER+L DA+ +V+ ++ +VA GGA ++E+S L + ++ + GK Q I ++A+AL+VIPR L +NAG D + L K+ H +G GVD+ G AD V P V AI +A+EAA +IL +D+ + K Sbjct: 365 GCKNPKAVTILIRGGTEHVVDEVERALEDAVKVVKDIVEDGKIVAAGGAPEIELSIRLDEYAKEVGGKEQLAIEAFAEALKVIPRTLAENAGLDPIETLVKVIAAH---KEKGPTIGVDVFEGEPADMLERGVIAPVRVPKQAIKSASEAAIMILRIDDVIAASK 526 The following BLAST results are available for this feature:
BLAST of CV885235 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 148
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Sequences
The
following sequences are available for this feature:
EST sequence >CV885235 ID=CV885235; Name=CV885235; organism=Citrus sinensis; type=EST; length=969bpback to top |