CV885174

Overview
NameCV885174
Unique NameCV885174
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length640
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CV885174 vs. ExPASy Swiss-Prot
Match: H2AZ_CANAL (Histone H2A.Z OS=Candida albicans GN=HTZ1 PE=3 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 3.173e-11
Identity = 37/57 (64.91%), Postives = 43/57 (75.44%), Query Frame = 3 
Query:  192 VLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPK 362
            VLELAGNAA+D K  RI PRH+ LA+R DEEL  L+   TIA+GGVLP+IN  LL K
Sbjct:   70 VLELAGNAAKDLKVKRITPRHLQLAIRGDEELDNLIK-ATIAYGGVLPHINKALLLK 125
[Close]
BLAST of CV885174 vs. ExPASy Swiss-Prot
Match: H2AZ_GIBZE (Histone H2A.Z OS=Gibberella zeae GN=HTZ1 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.412e-11
Identity = 37/57 (64.91%), Postives = 43/57 (75.44%), Query Frame = 3 
Query:  192 VLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPK 362
            VLELAGNAA+D K  RI PRH+ LA+R DEEL  L+   TIA+GGVLP+IN  LL K
Sbjct:   77 VLELAGNAAKDLKVKRITPRHLQLAIRGDEELDTLIR-ATIAYGGVLPHINRALLLK 132
[Close]
BLAST of CV885174 vs. ExPASy Swiss-Prot
Match: H2AZ_DEBHA (Histone H2A.Z OS=Debaryomyces hansenii GN=HTZ1 PE=3 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 7.068e-11
Identity = 37/57 (64.91%), Postives = 42/57 (73.68%), Query Frame = 3 
Query:  192 VLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPK 362
            VLELAGNAA+D K  RI PRH+ LA+R DEEL  L+   TIA GGVLP+IN  LL K
Sbjct:   70 VLELAGNAAKDLKVKRITPRHLQLAIRGDEELDNLIK-ATIAFGGVLPHINKALLLK 125
The following BLAST results are available for this feature:
BLAST of CV885174 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 183
Match NameE-valueIdentityDescription
H2AZ_CANAL3.173e-1164.91Histone H2A.Z OS=Candida albicans GN=HTZ1 PE=3 SV=... [more]
H2AZ_GIBZE5.412e-1164.91Histone H2A.Z OS=Gibberella zeae GN=HTZ1 PE=3 SV=1[more]
H2AZ_DEBHA7.068e-1164.91Histone H2A.Z OS=Debaryomyces hansenii GN=HTZ1 PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_013B01_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_013_T7_B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885174 ID=CV885174; Name=CV885174; organism=Citrus sinensis; type=EST; length=640bp
TCAACGCATCCAATTATATTTAGTAACCCCAGCTTGTATCAAAATTCATA
AAATTGCTTTTGAATTTGAACCAAATAATGATTAATACCGTGTCTTTTCT
CTGACGTTGCTTCTCTGTAGATGGGAAGAACTATGGTTCATAATTGTGTG
ATTTATTTGGTAATAATTTGTTGGGCTGAATCTGTGTTTAGGTTCTTGAG
TTGGCTGGTAATGCAGCGAGGGACAACAAGAAGAATAGGATCATCCCAAG
GCATGTTCTGTTGGCTGTAAGAAATGATGAGGAGCTTGGGAAGCTTCTTG
CTGGTGTGACAATTGCTCACGGTGGAGTCTTGCCAAACATCAACCCAGTT
CTTCTGCCGAAAAAATCTGAGAAGGCAGCAACGAAAGAGCCGAAGTCTCC
AGCCAAGGCCACTAAGTCCCCAAAGAAGGCTTAGTTTTTAGTCTTCTCAT
CTTTAACTGTGTGTATGTTACTTCTTTGATGTATTCGGCTTGTAGGAAAG
CTTCATGCTCGTAGGATTTAGGGACCATTCTACTGTTTTTAATTGTCCGT
CACTGTGTAGAACTTCTTTTGCTTCGACTGTAGAATGAATGAAATCGTGG
TACTTGTTCCGATATTTCATTTGTTGCAGAAGGTAATCCT
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